Wall clock time and date at job start Mon Mar 30 2020 05:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00217 * 2 1 4 4 H 1.48500 * 109.47168 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47413 * 300.00374 * 3 2 1 6 6 H 1.48496 * 109.46943 * 60.00429 * 3 2 1 7 7 C 1.37882 * 119.99589 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99908 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00389 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.47140 * 180.02562 * 9 7 2 11 11 C 1.42903 * 113.99629 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46726 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.47357 * 64.99864 * 12 11 10 14 14 C 1.40082 * 110.99800 * 66.04713 * 13 12 11 15 15 C 1.54514 * 111.50843 * 188.14848 * 14 13 12 16 16 C 1.50736 * 108.94486 * 283.98983 * 15 14 13 17 17 N 1.48070 * 112.94139 * 92.64690 * 16 15 14 18 18 C 1.46893 * 111.00430 * 192.21802 * 17 16 15 19 19 C 1.52999 * 109.47424 * 293.95823 * 18 17 16 20 20 O 1.42894 * 109.47370 * 64.99398 * 19 18 17 21 21 C 1.47747 * 113.78833 * 318.28936 * 17 16 15 22 22 C 1.47688 * 110.99960 * 194.68318 * 13 12 11 23 23 H 0.97000 * 119.99632 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.46405 * 60.00391 * 9 7 2 25 25 H 1.09004 * 109.47198 * 300.00876 * 9 7 2 26 26 H 1.09002 * 109.47382 * 59.99956 * 11 10 9 27 27 H 1.09001 * 109.46938 * 299.99942 * 11 10 9 28 28 H 1.09002 * 109.46642 * 184.99995 * 12 11 10 29 29 H 1.09002 * 109.47069 * 304.99524 * 12 11 10 30 30 H 1.08999 * 109.07374 * 308.66750 * 14 13 12 31 31 H 1.08998 * 109.07673 * 67.62894 * 14 13 12 32 32 H 1.09000 * 109.55944 * 43.83046 * 15 14 13 33 33 H 1.09003 * 109.55827 * 164.14779 * 15 14 13 34 34 H 1.09005 * 108.79246 * 213.54482 * 16 15 14 35 35 H 1.09004 * 108.79229 * 331.75328 * 16 15 14 36 36 H 1.09000 * 109.47262 * 53.95568 * 18 17 16 37 37 H 1.09000 * 109.47149 * 173.95613 * 18 17 16 38 38 H 1.08994 * 109.47240 * 185.00059 * 19 18 17 39 39 H 1.09004 * 109.46662 * 304.99900 * 19 18 17 40 40 H 0.96703 * 114.00133 * 180.02562 * 20 19 18 41 41 H 1.09000 * 108.99351 * 79.49402 * 21 17 16 42 42 H 1.08997 * 108.99509 * 198.32562 * 21 17 16 43 43 H 1.08996 * 109.74259 * 271.64534 * 22 13 12 44 44 H 1.09001 * 109.73628 * 32.34336 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5854 -0.0005 11 6 1.5649 -4.8755 -0.0011 12 6 2.6479 -5.9563 -0.0004 13 7 3.4071 -5.8880 1.2553 14 6 2.5993 -6.2249 2.3491 15 6 3.3226 -5.9633 3.6893 16 6 4.3355 -7.0555 3.9200 17 7 5.6824 -6.7105 3.4106 18 6 6.5560 -7.8913 3.3903 19 6 6.8174 -8.3569 4.8241 20 8 5.5931 -8.8025 5.4110 21 6 5.6678 -6.0400 2.0941 22 6 4.6620 -6.6605 1.1577 23 1 -0.4849 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8904 25 1 0.6245 -2.5571 0.8896 26 1 0.9450 -4.9823 -0.8913 27 1 0.9445 -4.9827 0.8886 28 1 2.1818 -6.9375 -0.0904 29 1 3.3220 -5.7957 -0.8418 30 1 1.6869 -5.6297 2.3148 31 1 2.3369 -7.2809 2.2863 32 1 3.8287 -4.9988 3.6486 33 1 2.5960 -5.9618 4.5018 34 1 4.4043 -7.2503 4.9903 35 1 3.9935 -7.9626 3.4218 36 1 6.0720 -8.6918 2.8309 37 1 7.5020 -7.6352 2.9133 38 1 7.5354 -9.1770 4.8146 39 1 7.2196 -7.5286 5.4074 40 1 5.6838 -9.1126 6.3225 41 1 5.4198 -4.9879 2.2346 42 1 6.6593 -6.1138 1.6474 43 1 4.4805 -7.6958 1.4459 44 1 5.0388 -6.6230 0.1356 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385296857.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:17 Heat of formation + Delta-G solvation = -76.229169 kcal Electronic energy + Delta-G solvation = -21999.047085 eV Core-core repulsion = 18758.988993 eV Total energy + Delta-G solvation = -3240.058093 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.77975 -37.65277 -36.51032 -35.23365 -32.69630 -32.36035 -30.75345 -28.94422 -26.94812 -25.86446 -25.58788 -22.41200 -22.25851 -21.91528 -20.19321 -19.62275 -17.73912 -16.74155 -16.34302 -15.83528 -15.67013 -15.57478 -14.97618 -14.66854 -14.21024 -14.15260 -13.58243 -13.46876 -13.18885 -13.06325 -12.80063 -12.29557 -12.07144 -11.95599 -11.61175 -11.52583 -11.27043 -11.16508 -10.93093 -10.79650 -10.72260 -10.57908 -10.49688 -10.22861 -9.94575 -9.84713 -8.99648 -8.72512 -8.27079 -8.06414 -7.79368 -6.04095 -4.04603 3.34114 3.40316 3.47643 3.84454 4.04526 4.10348 4.41643 4.79185 4.89388 5.02160 5.05086 5.09519 5.16322 5.22192 5.32226 5.32542 5.46946 5.51853 5.56321 5.57273 5.69659 5.73791 5.79993 5.86684 5.95860 5.97900 6.10504 6.26975 6.27494 6.34160 6.46841 6.50392 7.11915 7.18265 7.18581 7.37319 7.37965 7.51672 7.69357 7.88418 8.24722 8.70083 9.10774 9.60088 11.07736 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.025633 B = 0.003643 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.080011 B = 7684.924665 C = 8087.071282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.508 4.508 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.379 6.379 11 C 0.065 3.935 12 C 0.067 3.933 13 N -0.536 5.536 14 C 0.070 3.930 15 C -0.125 4.125 16 C 0.068 3.932 17 N -0.544 5.544 18 C 0.056 3.944 19 C 0.079 3.921 20 O -0.568 6.568 21 C 0.056 3.944 22 C 0.039 3.961 23 H 0.262 0.738 24 H 0.001 0.999 25 H 0.002 0.998 26 H 0.038 0.962 27 H 0.036 0.964 28 H 0.035 0.965 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.009 0.991 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.025 0.975 36 H 0.035 0.965 37 H 0.085 0.915 38 H 0.045 0.955 39 H 0.055 0.945 40 H 0.373 0.627 41 H 0.096 0.904 42 H 0.067 0.933 43 H 0.032 0.968 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.116 -19.001 8.061 23.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.147 4.147 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.546 4.546 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.298 6.298 11 C -0.013 4.013 12 C -0.061 4.061 13 N -0.260 5.260 14 C -0.059 4.059 15 C -0.163 4.163 16 C -0.059 4.059 17 N -0.270 5.270 18 C -0.072 4.072 19 C 0.001 3.999 20 O -0.373 6.373 21 C -0.072 4.072 22 C -0.090 4.090 23 H 0.072 0.928 24 H 0.019 0.981 25 H 0.020 0.980 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.027 0.973 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.043 0.957 36 H 0.053 0.947 37 H 0.103 0.897 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.220 0.780 41 H 0.115 0.885 42 H 0.086 0.914 43 H 0.050 0.950 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.247 -17.910 7.867 22.565 hybrid contribution -0.395 -0.738 -0.219 0.865 sum 10.852 -18.648 7.648 22.891 Atomic orbital electron populations 1.69981 1.06106 1.26893 1.51075 1.24954 0.94956 0.99412 0.95329 0.86296 0.80104 0.82683 0.77514 1.19438 1.20964 1.20899 1.21108 0.94123 0.89330 1.50056 0.91462 1.20172 0.88871 0.83974 0.95028 1.87946 1.34589 1.12285 1.94996 1.22302 0.93909 0.86376 0.98734 1.22123 0.96168 0.95872 0.91894 1.58802 1.06446 1.57829 1.02964 1.21140 0.96755 0.97212 0.90829 1.21631 0.97787 1.00672 0.96178 1.21975 0.86805 0.95823 1.01298 1.62167 1.12374 1.25784 1.26650 1.22172 0.97721 0.92247 0.95092 1.22232 0.85928 0.97280 0.94475 1.86617 1.32687 1.85797 1.32231 1.22084 0.97624 1.00733 0.86743 1.22369 0.91366 0.94646 1.00596 0.92838 0.98101 0.97982 0.94426 0.94551 0.94699 0.90213 0.90347 0.97309 0.89538 0.90985 0.89214 0.95717 0.94715 0.89687 0.93706 0.92694 0.78035 0.88535 0.91415 0.94995 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.52 13.29 55.43 0.74 -26.79 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.91 22.33 29.54 -169.99 -5.02 17.31 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.51 -15.35 9.43 -34.44 -0.32 -15.68 16 8 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 9 C 0.19 5.49 5.69 36.01 0.20 5.69 16 10 O -0.38 -9.46 10.27 -35.23 -0.36 -9.82 16 11 C 0.06 1.25 5.98 37.16 0.22 1.48 16 12 C 0.07 1.06 5.34 -3.82 -0.02 1.03 16 13 N -0.54 -8.48 3.94 -239.70 -0.94 -9.43 16 14 C 0.07 1.05 4.84 -6.55 -0.03 1.02 16 15 C -0.12 -1.73 5.68 -27.07 -0.15 -1.89 16 16 C 0.07 0.86 3.92 -4.31 -0.02 0.84 16 17 N -0.54 -6.65 4.73 -235.69 -1.12 -7.76 16 18 C 0.06 0.55 5.40 -3.83 -0.02 0.53 16 19 C 0.08 0.64 7.30 37.16 0.27 0.91 16 20 O -0.57 -4.96 10.43 -35.23 -0.37 -5.32 16 21 C 0.06 0.72 5.26 -4.47 -0.02 0.69 16 22 C 0.04 0.51 5.33 -4.50 -0.02 0.49 16 23 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 24 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 25 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.04 0.69 6.16 -51.93 -0.32 0.37 16 28 H 0.03 0.48 8.11 -51.93 -0.42 0.06 16 29 H 0.08 1.25 7.68 -51.93 -0.40 0.85 16 30 H 0.08 1.28 5.86 -51.93 -0.30 0.98 16 31 H 0.01 0.13 7.60 -51.93 -0.39 -0.27 16 32 H 0.09 1.38 7.19 -51.93 -0.37 1.01 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.09 1.13 5.94 -51.93 -0.31 0.82 16 35 H 0.02 0.34 6.29 -51.93 -0.33 0.01 16 36 H 0.03 0.37 7.73 -51.93 -0.40 -0.03 16 37 H 0.08 0.70 7.70 -51.93 -0.40 0.30 16 38 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.37 1.64 9.12 45.56 0.42 2.05 16 41 H 0.10 1.50 7.20 -51.93 -0.37 1.13 16 42 H 0.07 0.75 7.58 -51.93 -0.39 0.35 16 43 H 0.03 0.42 6.43 -51.93 -0.33 0.09 16 44 H 0.08 0.94 7.55 -51.93 -0.39 0.54 16 LS Contribution 336.24 15.07 5.07 5.07 Total: -1.00 -33.38 336.24 -8.83 -42.21 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -6.81 Total: -2.08 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -0.01 Total: -3.38 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: -1.32 Total: -43.98 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.73 Total: -15.15 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.38 -8.83 -42.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385296857.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.017 kcal (2) G-P(sol) polarization free energy of solvation -33.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds