Wall clock time and date at job start Mon Mar 30 2020 05:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00217 * 2 1 4 4 H 1.48500 * 109.47168 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47413 * 300.00374 * 3 2 1 6 6 H 1.48496 * 109.46943 * 60.00429 * 3 2 1 7 7 C 1.37882 * 119.99589 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99908 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00389 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.47140 * 180.02562 * 9 7 2 11 11 C 1.42903 * 113.99629 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46726 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.47357 * 64.99864 * 12 11 10 14 14 C 1.40082 * 110.99800 * 66.04713 * 13 12 11 15 15 C 1.54514 * 111.50843 * 188.14848 * 14 13 12 16 16 C 1.50736 * 108.94486 * 283.98983 * 15 14 13 17 17 N 1.48070 * 112.94139 * 92.64690 * 16 15 14 18 18 C 1.46893 * 111.00430 * 192.21802 * 17 16 15 19 19 C 1.52999 * 109.47424 * 293.95823 * 18 17 16 20 20 O 1.42894 * 109.47370 * 64.99398 * 19 18 17 21 21 C 1.47747 * 113.78833 * 318.28936 * 17 16 15 22 22 C 1.47688 * 110.99960 * 194.68318 * 13 12 11 23 23 H 0.97000 * 119.99632 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.46405 * 60.00391 * 9 7 2 25 25 H 1.09004 * 109.47198 * 300.00876 * 9 7 2 26 26 H 1.09002 * 109.47382 * 59.99956 * 11 10 9 27 27 H 1.09001 * 109.46938 * 299.99942 * 11 10 9 28 28 H 1.09002 * 109.46642 * 184.99995 * 12 11 10 29 29 H 1.09002 * 109.47069 * 304.99524 * 12 11 10 30 30 H 1.08999 * 109.07374 * 308.66750 * 14 13 12 31 31 H 1.08998 * 109.07673 * 67.62894 * 14 13 12 32 32 H 1.09000 * 109.55944 * 43.83046 * 15 14 13 33 33 H 1.09003 * 109.55827 * 164.14779 * 15 14 13 34 34 H 1.09005 * 108.79246 * 213.54482 * 16 15 14 35 35 H 1.09004 * 108.79229 * 331.75328 * 16 15 14 36 36 H 1.09000 * 109.47262 * 53.95568 * 18 17 16 37 37 H 1.09000 * 109.47149 * 173.95613 * 18 17 16 38 38 H 1.08994 * 109.47240 * 185.00059 * 19 18 17 39 39 H 1.09004 * 109.46662 * 304.99900 * 19 18 17 40 40 H 0.96703 * 114.00133 * 180.02562 * 20 19 18 41 41 H 1.09000 * 108.99351 * 79.49402 * 21 17 16 42 42 H 1.08997 * 108.99509 * 198.32562 * 21 17 16 43 43 H 1.08996 * 109.74259 * 271.64534 * 22 13 12 44 44 H 1.09001 * 109.73628 * 32.34336 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5854 -0.0005 11 6 1.5649 -4.8755 -0.0011 12 6 2.6479 -5.9563 -0.0004 13 7 3.4071 -5.8880 1.2553 14 6 2.5993 -6.2249 2.3491 15 6 3.3226 -5.9633 3.6893 16 6 4.3355 -7.0555 3.9200 17 7 5.6824 -6.7105 3.4106 18 6 6.5560 -7.8913 3.3903 19 6 6.8174 -8.3569 4.8241 20 8 5.5931 -8.8025 5.4110 21 6 5.6678 -6.0400 2.0941 22 6 4.6620 -6.6605 1.1577 23 1 -0.4849 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8904 25 1 0.6245 -2.5571 0.8896 26 1 0.9450 -4.9823 -0.8913 27 1 0.9445 -4.9827 0.8886 28 1 2.1818 -6.9375 -0.0904 29 1 3.3220 -5.7957 -0.8418 30 1 1.6869 -5.6297 2.3148 31 1 2.3369 -7.2809 2.2863 32 1 3.8287 -4.9988 3.6486 33 1 2.5960 -5.9618 4.5018 34 1 4.4043 -7.2503 4.9903 35 1 3.9935 -7.9626 3.4218 36 1 6.0720 -8.6918 2.8309 37 1 7.5020 -7.6352 2.9133 38 1 7.5354 -9.1770 4.8146 39 1 7.2196 -7.5286 5.4074 40 1 5.6838 -9.1126 6.3225 41 1 5.4198 -4.9879 2.2346 42 1 6.6593 -6.1138 1.6474 43 1 4.4805 -7.6958 1.4459 44 1 5.0388 -6.6230 0.1356 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385296857.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:17 Heat of formation + Delta-G solvation = -103.302489 kcal Electronic energy + Delta-G solvation = -22000.221072 eV Core-core repulsion = 18758.988993 eV Total energy + Delta-G solvation = -3241.232080 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.88089 -38.81904 -37.90469 -36.33452 -34.87719 -33.51802 -31.87353 -30.25662 -28.88693 -26.92645 -26.83189 -24.47775 -23.34543 -23.11545 -21.43745 -20.63123 -18.61884 -18.37686 -17.80802 -17.40867 -17.00194 -16.74819 -16.41196 -16.04996 -15.73149 -15.59416 -14.96003 -14.51497 -14.39727 -14.14854 -13.89908 -13.78429 -13.51165 -13.26909 -13.04546 -12.77920 -12.73170 -12.52257 -12.46303 -12.31865 -12.18492 -12.02378 -11.76054 -11.50386 -11.39009 -11.20007 -10.84540 -10.64936 -10.16702 -9.31417 -8.90392 -8.30843 -6.42587 1.40399 1.42184 1.57246 2.36359 2.88110 2.96120 3.02804 3.22990 3.52661 3.86621 3.92651 4.01186 4.14154 4.23905 4.28732 4.32184 4.39768 4.41928 4.50639 4.54604 4.58076 4.63353 4.66632 4.77798 4.83068 4.85838 4.87795 4.95730 4.99255 5.03539 5.19442 5.22141 5.36061 5.41604 5.57275 5.98703 6.10393 6.20990 6.26863 6.51546 6.59247 6.87383 6.97472 7.29621 8.81916 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.025633 B = 0.003643 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.080011 B = 7684.924665 C = 8087.071282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.984 3.016 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.210 3.790 10 O -0.393 6.393 11 C 0.056 3.944 12 C 0.075 3.925 13 N -0.560 5.560 14 C 0.074 3.926 15 C -0.120 4.120 16 C 0.080 3.920 17 N -0.552 5.552 18 C 0.052 3.948 19 C 0.081 3.919 20 O -0.588 6.588 21 C 0.060 3.940 22 C 0.046 3.954 23 H 0.270 0.730 24 H -0.017 1.017 25 H -0.020 1.020 26 H 0.047 0.953 27 H 0.036 0.964 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.057 0.943 31 H 0.020 0.980 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.018 0.982 36 H 0.028 0.972 37 H 0.102 0.898 38 H 0.068 0.932 39 H 0.054 0.946 40 H 0.391 0.609 41 H 0.064 0.936 42 H 0.088 0.912 43 H 0.037 0.963 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.695 -19.601 8.288 24.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.193 4.193 3 Si 0.807 3.193 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.581 4.581 8 H 0.078 0.922 9 C 0.135 3.865 10 O -0.312 6.312 11 C -0.022 4.022 12 C -0.052 4.052 13 N -0.285 5.285 14 C -0.056 4.056 15 C -0.158 4.158 16 C -0.047 4.047 17 N -0.278 5.278 18 C -0.075 4.075 19 C 0.003 3.997 20 O -0.397 6.397 21 C -0.068 4.068 22 C -0.082 4.082 23 H 0.079 0.921 24 H 0.001 0.999 25 H -0.003 1.003 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.082 0.918 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.038 0.962 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.036 0.964 36 H 0.046 0.954 37 H 0.120 0.880 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.241 0.759 41 H 0.082 0.918 42 H 0.107 0.893 43 H 0.056 0.944 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.830 -18.547 8.109 23.966 hybrid contribution -0.919 -0.641 -0.260 1.150 sum 11.911 -19.187 7.848 23.909 Atomic orbital electron populations 1.70084 1.07771 1.28518 1.50810 1.25976 0.95972 1.03414 0.93972 0.85126 0.78675 0.77267 0.78279 1.18841 1.19537 1.19668 1.21402 0.94026 0.90840 1.51806 0.92168 1.19779 0.88665 0.85075 0.92994 1.87901 1.34578 1.13740 1.95020 1.22640 0.95567 0.84790 0.99153 1.22045 0.95385 0.95552 0.92219 1.58780 1.07426 1.59263 1.02999 1.21074 0.96022 0.97297 0.91177 1.21598 0.98253 0.99877 0.96117 1.21830 0.86821 0.94613 1.01447 1.62153 1.12256 1.27190 1.26191 1.22325 0.97706 0.90939 0.96562 1.22225 0.86114 0.98079 0.93255 1.86546 1.33310 1.85970 1.33850 1.21984 0.98578 0.98949 0.87281 1.22369 0.90068 0.94446 1.01347 0.92095 0.99893 1.00267 0.93488 0.94597 0.91796 0.89823 0.92453 0.96212 0.92058 0.89939 0.88834 0.96401 0.95375 0.88024 0.91351 0.92817 0.75928 0.91785 0.89322 0.94448 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.47 13.29 21.45 0.28 -57.18 16 2 C 0.00 0.28 5.46 84.66 0.46 0.74 16 3 Si 0.98 45.64 29.54 68.60 2.03 47.67 16 4 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.54 -33.56 9.43 25.60 0.24 -33.32 16 8 H 0.06 3.71 7.81 -2.91 -0.02 3.69 16 9 C 0.21 12.33 5.69 71.24 0.41 12.74 16 10 O -0.39 -20.19 10.27 -148.98 -1.53 -21.72 16 11 C 0.06 2.19 5.98 71.98 0.43 2.62 16 12 C 0.08 2.31 5.34 86.30 0.46 2.78 16 13 N -0.56 -17.55 3.94 -912.27 -3.59 -21.14 16 14 C 0.07 2.21 4.84 88.05 0.43 2.64 16 15 C -0.12 -3.38 5.68 30.37 0.17 -3.20 16 16 C 0.08 1.97 3.92 85.34 0.33 2.30 16 17 N -0.55 -12.88 4.73 -899.59 -4.26 -17.14 16 18 C 0.05 0.92 5.40 86.30 0.47 1.38 16 19 C 0.08 1.12 7.30 71.98 0.53 1.65 16 20 O -0.59 -9.12 10.43 -148.98 -1.55 -10.67 16 21 C 0.06 1.50 5.26 85.42 0.45 1.95 16 22 C 0.05 1.15 5.33 85.43 0.46 1.60 16 23 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 24 H -0.02 -1.01 8.14 -2.38 -0.02 -1.03 16 25 H -0.02 -1.26 8.14 -2.38 -0.02 -1.28 16 26 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.04 1.41 6.16 -2.39 -0.01 1.40 16 28 H 0.06 1.63 8.11 -2.39 -0.02 1.61 16 29 H 0.08 2.51 7.68 -2.39 -0.02 2.50 16 30 H 0.06 1.93 5.86 -2.39 -0.01 1.92 16 31 H 0.02 0.55 7.60 -2.39 -0.02 0.54 16 32 H 0.06 2.04 7.19 -2.39 -0.02 2.02 16 33 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.09 2.26 5.94 -2.38 -0.01 2.24 16 35 H 0.02 0.47 6.29 -2.38 -0.02 0.45 16 36 H 0.03 0.54 7.73 -2.39 -0.02 0.52 16 37 H 0.10 1.41 7.70 -2.39 -0.02 1.39 16 38 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.39 2.64 9.12 -74.06 -0.68 1.97 16 41 H 0.06 2.03 7.20 -2.39 -0.02 2.01 16 42 H 0.09 1.81 7.58 -2.39 -0.02 1.79 16 43 H 0.04 0.91 6.43 -2.39 -0.02 0.90 16 44 H 0.09 1.98 7.55 -2.39 -0.02 1.96 16 Total: -1.00 -72.29 336.24 -3.50 -75.79 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 0.30 Total: 10.53 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: 4.83 Total: -6.14 kcal Atomic # 7 Polarization: -87.89 SS G_CDS: -7.57 Total: -95.46 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -3.08 Total: -32.39 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -72.29 -3.50 -75.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385296857.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.514 kcal (2) G-P(sol) polarization free energy of solvation -72.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds