Wall clock time and date at job start Mon Mar 30 2020 04:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86798 * 120.00036 * 2 1 4 4 H 1.48498 * 109.47239 * 270.00063 * 3 2 1 5 5 H 1.48500 * 109.47326 * 30.00022 * 3 2 1 6 6 H 1.48496 * 109.47135 * 150.00009 * 3 2 1 7 7 C 1.37873 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00353 * 0.02562 * 7 2 1 9 9 C 1.50708 * 119.99976 * 179.97438 * 7 2 1 10 10 O 1.42892 * 109.46992 * 180.02562 * 9 7 2 11 11 C 1.42908 * 113.99952 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47232 * 179.97438 * 11 10 9 13 13 N 1.46903 * 109.47416 * 64.58437 * 12 11 10 14 14 C 1.46845 * 110.99642 * 75.71877 * 13 12 11 15 15 C 1.53036 * 109.52120 * 185.83945 * 14 13 12 16 16 C 1.53117 * 109.28173 * 300.82196 * 15 14 13 17 17 O 1.42897 * 109.52012 * 297.68619 * 16 15 14 18 18 C 1.50701 * 109.52541 * 177.55713 * 16 15 14 19 19 N 1.34768 * 120.00047 * 155.12529 * 18 16 15 20 20 O 1.21278 * 119.99865 * 335.12817 * 18 16 15 21 21 C 1.53117 * 109.20989 * 57.62036 * 16 15 14 22 22 C 1.46844 * 111.00222 * 199.93036 * 13 12 11 23 23 H 0.96992 * 119.99675 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.46882 * 60.00094 * 9 7 2 25 25 H 1.09006 * 109.47044 * 300.00256 * 9 7 2 26 26 H 1.08997 * 109.46750 * 59.99855 * 11 10 9 27 27 H 1.08997 * 109.46576 * 299.99689 * 11 10 9 28 28 H 1.09000 * 109.47047 * 304.58531 * 12 11 10 29 29 H 1.08995 * 109.47367 * 184.58553 * 12 11 10 30 30 H 1.09001 * 109.46649 * 65.82597 * 14 13 12 31 31 H 1.09004 * 109.46606 * 305.85288 * 14 13 12 32 32 H 1.09007 * 109.50640 * 180.87547 * 15 14 13 33 33 H 1.09005 * 109.50347 * 60.76388 * 15 14 13 34 34 H 0.96708 * 113.99528 * 179.87252 * 17 16 15 35 35 H 0.97007 * 120.00390 * 0.02562 * 19 18 16 36 36 H 0.96997 * 120.00532 * 180.02562 * 19 18 16 37 37 H 1.09005 * 109.50553 * 62.32514 * 21 16 15 38 38 H 1.09007 * 109.50222 * 182.43502 * 21 16 15 39 39 H 1.09000 * 109.46007 * 294.17531 * 22 13 12 40 40 H 1.08996 * 109.46139 * 54.15527 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 8 3.9879 -2.5413 0.0001 11 6 5.4125 -2.6542 0.0001 12 6 5.8069 -4.1324 0.0009 13 7 5.3589 -4.7595 -1.2497 14 6 6.2289 -4.3795 -2.3700 15 6 5.6510 -4.9299 -3.6758 16 6 5.5476 -6.4546 -3.5799 17 8 6.8528 -7.0123 -3.4150 18 6 4.9234 -6.9973 -4.8397 19 7 5.1693 -8.2663 -5.2209 20 8 4.2000 -6.2920 -5.5105 21 6 4.6767 -6.8258 -2.3765 22 6 5.2820 -6.2191 -1.1085 23 1 -0.4849 0.8400 -0.0004 24 1 3.8753 -0.6797 0.8894 25 1 3.8746 -0.6808 -0.8905 26 1 5.8152 -2.1706 0.8901 27 1 5.8152 -2.1708 -0.8899 28 1 5.3370 -4.6334 0.8472 29 1 6.8903 -4.2194 0.0831 30 1 7.2256 -4.7915 -2.2119 31 1 6.2905 -3.2928 -2.4297 32 1 6.3051 -4.6609 -4.5053 33 1 4.6598 -4.5076 -3.8417 34 1 6.8624 -7.9768 -3.3451 35 1 5.7477 -8.8306 -4.6842 36 1 4.7679 -8.6156 -6.0319 37 1 3.6698 -6.4342 -2.5213 38 1 4.6352 -7.9106 -2.2781 39 1 6.2831 -6.6225 -0.9562 40 1 4.6558 -6.4686 -0.2520 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385337361.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:39 Heat of formation + Delta-G solvation = -128.011669 kcal Electronic energy + Delta-G solvation = -21715.653711 eV Core-core repulsion = 18337.517067 eV Total energy + Delta-G solvation = -3378.136645 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.76361 -38.52853 -37.05892 -36.05147 -33.82379 -32.77025 -32.20584 -31.01969 -29.10099 -27.31888 -24.95906 -23.42405 -21.80420 -21.66225 -20.82007 -19.91271 -18.66566 -17.13543 -16.77917 -16.58578 -15.75458 -15.62027 -15.03406 -14.89304 -14.56928 -14.53010 -14.29645 -14.11520 -13.57625 -13.10381 -12.70132 -12.68576 -12.42881 -12.00797 -11.82670 -11.73857 -11.37738 -11.20669 -11.09295 -10.84259 -10.65583 -10.58202 -10.24716 -10.04379 -9.78375 -9.69858 -9.07592 -8.73590 -8.35242 -8.05810 -6.03467 -4.01407 2.27968 3.06839 3.30673 3.37033 3.38670 3.79209 3.99406 4.32790 4.42705 4.46723 4.65125 4.74541 5.10088 5.23444 5.27993 5.29617 5.38064 5.50182 5.52759 5.62902 5.73688 5.81150 5.88720 5.95267 5.99097 6.10051 6.22823 6.28841 6.42772 6.70087 6.80541 7.09707 7.15918 7.23532 7.25513 7.69489 7.90496 8.15238 8.78309 9.09990 9.56640 11.09861 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.024534 B = 0.004063 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.011958 B = 6889.952996 C = 7417.036061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.875 3.125 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.513 4.513 8 H 0.083 0.917 9 C 0.168 3.832 10 O -0.364 6.364 11 C 0.064 3.936 12 C 0.063 3.937 13 N -0.525 5.525 14 C 0.060 3.940 15 C -0.090 4.090 16 C 0.122 3.878 17 O -0.543 6.543 18 C 0.498 3.502 19 N -0.855 5.855 20 O -0.525 6.525 21 C -0.137 4.137 22 C 0.066 3.934 23 H 0.265 0.735 24 H -0.001 1.001 25 H -0.004 1.004 26 H 0.039 0.961 27 H 0.037 0.963 28 H 0.080 0.920 29 H 0.042 0.958 30 H 0.039 0.961 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.370 0.630 35 H 0.397 0.603 36 H 0.402 0.598 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.036 0.964 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.861 -17.959 -5.838 25.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.702 3.298 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.551 4.551 8 H 0.101 0.899 9 C 0.092 3.908 10 O -0.283 6.283 11 C -0.014 4.014 12 C -0.065 4.065 13 N -0.250 5.250 14 C -0.068 4.068 15 C -0.128 4.128 16 C 0.078 3.922 17 O -0.349 6.349 18 C 0.282 3.718 19 N -0.420 5.420 20 O -0.399 6.399 21 C -0.176 4.176 22 C -0.062 4.062 23 H 0.075 0.925 24 H 0.017 0.983 25 H 0.014 0.986 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.099 0.901 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.120 0.880 34 H 0.217 0.783 35 H 0.225 0.775 36 H 0.234 0.766 37 H 0.112 0.888 38 H 0.090 0.910 39 H 0.054 0.946 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 15.824 -16.566 -6.266 23.751 hybrid contribution 1.290 -0.253 0.029 1.315 sum 17.114 -16.819 -6.237 24.793 Atomic orbital electron populations 1.69883 1.06046 1.26939 1.50782 1.24766 0.94778 0.98681 0.94801 0.86858 0.80314 0.83874 0.78732 1.19967 1.20895 1.19172 1.20907 0.88366 0.95261 1.50607 0.89941 1.20572 0.96150 0.80021 0.94013 1.87998 1.16827 1.28627 1.94858 1.22314 0.85707 0.94669 0.98750 1.22094 0.97005 0.95320 0.92047 1.61774 1.51544 1.07504 1.04159 1.22052 0.93774 1.00843 0.90122 1.21479 1.04350 0.89099 0.97848 1.21594 0.82974 0.96532 0.91132 1.86713 1.27468 1.24954 1.95722 1.21459 0.80984 0.81889 0.87492 1.43861 1.53534 1.14293 1.30343 1.90798 1.36881 1.57693 1.54528 1.22229 1.01143 1.00343 0.93856 1.21931 0.99252 0.88003 0.97048 0.92480 0.98319 0.98605 0.94271 0.94498 0.90105 0.93952 0.94318 0.90125 0.90701 0.87963 0.78307 0.77497 0.76646 0.88751 0.91029 0.94590 0.90103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.39 13.96 55.43 0.77 -27.62 16 2 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 3 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 4 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 7 C -0.51 -15.74 9.99 -34.44 -0.34 -16.08 16 8 H 0.08 2.77 8.06 -52.49 -0.42 2.35 16 9 C 0.17 4.41 4.76 36.01 0.17 4.58 16 10 O -0.36 -8.74 10.27 -35.23 -0.36 -9.10 16 11 C 0.06 1.14 6.13 37.16 0.23 1.37 16 12 C 0.06 0.91 5.39 -3.82 -0.02 0.89 16 13 N -0.53 -7.71 4.53 -234.68 -1.06 -8.77 16 14 C 0.06 0.80 5.16 -3.84 -0.02 0.78 16 15 C -0.09 -1.20 4.68 -26.65 -0.12 -1.32 16 16 C 0.12 1.29 0.93 -91.65 -0.09 1.21 16 17 O -0.54 -4.53 11.74 -35.23 -0.41 -4.95 16 18 C 0.50 5.61 7.00 -10.99 -0.08 5.53 16 19 N -0.85 -5.35 8.78 31.22 0.27 -5.07 16 20 O -0.52 -8.46 16.89 5.56 0.09 -8.37 16 21 C -0.14 -1.44 5.07 -26.65 -0.13 -1.57 16 22 C 0.07 0.76 5.29 -3.83 -0.02 0.74 16 23 H 0.27 7.77 8.31 -40.82 -0.34 7.43 16 24 H 0.00 -0.02 7.20 -51.93 -0.37 -0.39 16 25 H 0.00 -0.10 7.57 -51.93 -0.39 -0.49 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.64 6.71 -51.93 -0.35 0.29 16 28 H 0.08 1.15 7.79 -51.93 -0.40 0.75 16 29 H 0.04 0.51 8.00 -51.93 -0.42 0.09 16 30 H 0.04 0.48 7.76 -51.93 -0.40 0.08 16 31 H 0.08 1.13 6.65 -51.93 -0.35 0.79 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.10 1.63 7.79 -51.93 -0.40 1.23 16 34 H 0.37 1.35 7.58 45.56 0.35 1.70 16 35 H 0.40 1.04 7.33 -40.82 -0.30 0.74 16 36 H 0.40 2.21 8.93 -40.82 -0.36 1.84 16 37 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.04 0.37 7.76 -51.93 -0.40 -0.03 16 40 H 0.08 0.93 7.93 -51.93 -0.41 0.52 16 LS Contribution 322.19 15.07 4.86 4.86 Total: -1.00 -37.37 322.19 -6.54 -43.91 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -5.50 Total: -0.38 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -0.53 Total: -1.82 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: -0.01 Total: -41.46 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.68 Total: -22.42 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -37.37 -6.54 -43.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385337361.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.101 kcal (2) G-P(sol) polarization free energy of solvation -37.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds