Wall clock time and date at job start Mon Mar 30 2020 04:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86798 * 120.00036 * 2 1 4 4 H 1.48498 * 109.47239 * 270.00063 * 3 2 1 5 5 H 1.48500 * 109.47326 * 30.00022 * 3 2 1 6 6 H 1.48496 * 109.47135 * 150.00009 * 3 2 1 7 7 C 1.37873 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00353 * 0.02562 * 7 2 1 9 9 C 1.50708 * 119.99976 * 179.97438 * 7 2 1 10 10 O 1.42892 * 109.46992 * 180.02562 * 9 7 2 11 11 C 1.42908 * 113.99952 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47232 * 179.97438 * 11 10 9 13 13 N 1.46903 * 109.47416 * 64.58437 * 12 11 10 14 14 C 1.46845 * 110.99642 * 75.71877 * 13 12 11 15 15 C 1.53036 * 109.52120 * 185.83945 * 14 13 12 16 16 C 1.53117 * 109.28173 * 300.82196 * 15 14 13 17 17 O 1.42897 * 109.52012 * 297.68619 * 16 15 14 18 18 C 1.50701 * 109.52541 * 177.55713 * 16 15 14 19 19 N 1.34768 * 120.00047 * 155.12529 * 18 16 15 20 20 O 1.21278 * 119.99865 * 335.12817 * 18 16 15 21 21 C 1.53117 * 109.20989 * 57.62036 * 16 15 14 22 22 C 1.46844 * 111.00222 * 199.93036 * 13 12 11 23 23 H 0.96992 * 119.99675 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.46882 * 60.00094 * 9 7 2 25 25 H 1.09006 * 109.47044 * 300.00256 * 9 7 2 26 26 H 1.08997 * 109.46750 * 59.99855 * 11 10 9 27 27 H 1.08997 * 109.46576 * 299.99689 * 11 10 9 28 28 H 1.09000 * 109.47047 * 304.58531 * 12 11 10 29 29 H 1.08995 * 109.47367 * 184.58553 * 12 11 10 30 30 H 1.09001 * 109.46649 * 65.82597 * 14 13 12 31 31 H 1.09004 * 109.46606 * 305.85288 * 14 13 12 32 32 H 1.09007 * 109.50640 * 180.87547 * 15 14 13 33 33 H 1.09005 * 109.50347 * 60.76388 * 15 14 13 34 34 H 0.96708 * 113.99528 * 179.87252 * 17 16 15 35 35 H 0.97007 * 120.00390 * 0.02562 * 19 18 16 36 36 H 0.96997 * 120.00532 * 180.02562 * 19 18 16 37 37 H 1.09005 * 109.50553 * 62.32514 * 21 16 15 38 38 H 1.09007 * 109.50222 * 182.43502 * 21 16 15 39 39 H 1.09000 * 109.46007 * 294.17531 * 22 13 12 40 40 H 1.08996 * 109.46139 * 54.15527 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 8 3.9879 -2.5413 0.0001 11 6 5.4125 -2.6542 0.0001 12 6 5.8069 -4.1324 0.0009 13 7 5.3589 -4.7595 -1.2497 14 6 6.2289 -4.3795 -2.3700 15 6 5.6510 -4.9299 -3.6758 16 6 5.5476 -6.4546 -3.5799 17 8 6.8528 -7.0123 -3.4150 18 6 4.9234 -6.9973 -4.8397 19 7 5.1693 -8.2663 -5.2209 20 8 4.2000 -6.2920 -5.5105 21 6 4.6767 -6.8258 -2.3765 22 6 5.2820 -6.2191 -1.1085 23 1 -0.4849 0.8400 -0.0004 24 1 3.8753 -0.6797 0.8894 25 1 3.8746 -0.6808 -0.8905 26 1 5.8152 -2.1706 0.8901 27 1 5.8152 -2.1708 -0.8899 28 1 5.3370 -4.6334 0.8472 29 1 6.8903 -4.2194 0.0831 30 1 7.2256 -4.7915 -2.2119 31 1 6.2905 -3.2928 -2.4297 32 1 6.3051 -4.6609 -4.5053 33 1 4.6598 -4.5076 -3.8417 34 1 6.8624 -7.9768 -3.3451 35 1 5.7477 -8.8306 -4.6842 36 1 4.7679 -8.6156 -6.0319 37 1 3.6698 -6.4342 -2.5213 38 1 4.6352 -7.9106 -2.2781 39 1 6.2831 -6.6225 -0.9562 40 1 4.6558 -6.4686 -0.2520 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385337361.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:38 Heat of formation + Delta-G solvation = -162.830808 kcal Electronic energy + Delta-G solvation = -21717.163583 eV Core-core repulsion = 18337.517067 eV Total energy + Delta-G solvation = -3379.646516 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.65009 -39.58770 -38.48238 -37.20326 -34.89755 -34.56534 -33.41031 -31.98669 -30.70139 -29.06928 -26.02165 -24.40187 -23.93102 -22.81990 -21.82408 -20.80545 -19.40789 -19.02522 -17.94944 -17.59048 -17.33773 -16.75698 -16.49217 -16.04060 -15.88832 -15.56857 -15.54713 -15.28009 -14.75840 -14.66448 -14.34097 -13.83640 -13.72074 -13.25833 -13.18178 -12.96556 -12.63883 -12.59926 -12.33891 -12.24559 -12.10558 -11.91280 -11.79109 -11.37199 -11.20016 -10.90497 -10.78642 -10.59564 -10.25086 -9.07830 -8.35844 -6.43093 1.32851 1.36537 1.40523 1.47255 2.30436 2.33899 2.89153 2.96753 3.14945 3.19909 3.49898 3.59818 3.89357 4.10158 4.23179 4.27054 4.39038 4.42218 4.53016 4.56646 4.61513 4.64040 4.68364 4.76198 4.90618 4.96486 5.02123 5.06366 5.07930 5.25214 5.46963 5.78593 5.96644 6.19595 6.22705 6.26886 6.61305 6.68477 6.84938 7.19637 7.21815 8.81743 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.024534 B = 0.004063 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.011958 B = 6889.952996 C = 7417.036061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.011 3.989 3 Si 0.957 3.043 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.244 1.244 7 C -0.542 4.542 8 H 0.027 0.973 9 C 0.180 3.820 10 O -0.393 6.393 11 C 0.053 3.947 12 C 0.069 3.931 13 N -0.560 5.560 14 C 0.068 3.932 15 C -0.094 4.094 16 C 0.136 3.864 17 O -0.541 6.541 18 C 0.495 3.505 19 N -0.827 5.827 20 O -0.584 6.584 21 C -0.134 4.134 22 C 0.066 3.934 23 H 0.272 0.728 24 H 0.012 0.988 25 H 0.003 0.997 26 H 0.057 0.943 27 H 0.042 0.958 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.394 0.606 35 H 0.418 0.582 36 H 0.410 0.590 37 H 0.058 0.942 38 H 0.112 0.888 39 H 0.061 0.939 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.054 -18.623 -5.437 27.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.167 1.167 7 C -0.580 4.580 8 H 0.046 0.954 9 C 0.104 3.896 10 O -0.312 6.312 11 C -0.025 4.025 12 C -0.058 4.058 13 N -0.285 5.285 14 C -0.060 4.060 15 C -0.132 4.132 16 C 0.091 3.909 17 O -0.349 6.349 18 C 0.279 3.721 19 N -0.393 5.393 20 O -0.464 6.464 21 C -0.173 4.173 22 C -0.061 4.061 23 H 0.081 0.919 24 H 0.029 0.971 25 H 0.021 0.979 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.245 0.755 35 H 0.250 0.750 36 H 0.242 0.758 37 H 0.077 0.923 38 H 0.130 0.870 39 H 0.079 0.921 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 19.066 -17.336 -5.849 26.425 hybrid contribution 0.288 -0.230 -0.111 0.385 sum 19.355 -17.566 -5.960 26.809 Atomic orbital electron populations 1.70044 1.08287 1.28709 1.51369 1.25860 0.95809 1.03436 0.93505 0.85592 0.79508 0.77462 0.79661 1.18705 1.19635 1.16730 1.21183 0.91133 0.93725 1.51982 0.95427 1.20261 0.93178 0.81584 0.94585 1.87952 1.20955 1.27242 1.95074 1.22720 0.82252 0.97700 0.99788 1.22049 0.98886 0.92885 0.92011 1.61698 1.52671 1.09647 1.04524 1.21957 0.94310 1.00095 0.89641 1.21374 1.02122 0.91584 0.98118 1.21149 0.83976 0.94829 0.90907 1.86676 1.25410 1.27272 1.95565 1.21603 0.80319 0.82867 0.87297 1.43622 1.52514 1.12725 1.30399 1.90778 1.39652 1.59597 1.56346 1.22223 0.98993 1.02601 0.93435 1.21983 1.00566 0.86259 0.97284 0.91855 0.97071 0.97900 0.92461 0.94007 0.90186 0.90472 0.92500 0.91529 0.90601 0.91870 0.75501 0.74960 0.75774 0.92347 0.87009 0.92058 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.48 13.96 21.45 0.30 -61.18 16 2 C 0.01 0.70 5.47 84.65 0.46 1.16 16 3 Si 0.96 45.02 27.47 68.60 1.88 46.90 16 4 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.24 -10.52 6.54 99.48 0.65 -9.87 16 7 C -0.54 -34.56 9.99 25.60 0.26 -34.31 16 8 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 9 C 0.18 9.47 4.76 71.24 0.34 9.81 16 10 O -0.39 -19.12 10.27 -148.98 -1.53 -20.65 16 11 C 0.05 1.82 6.13 71.98 0.44 2.26 16 12 C 0.07 1.88 5.39 86.30 0.47 2.34 16 13 N -0.56 -16.04 4.53 -896.38 -4.06 -20.10 16 14 C 0.07 1.76 5.16 86.33 0.45 2.21 16 15 C -0.09 -2.55 4.68 30.65 0.14 -2.41 16 16 C 0.14 2.73 0.93 -11.46 -0.01 2.72 16 17 O -0.54 -7.12 11.74 -148.98 -1.75 -8.87 16 18 C 0.50 10.82 7.00 87.66 0.61 11.43 16 19 N -0.83 -8.39 8.78 -173.54 -1.52 -9.92 16 20 O -0.58 -19.61 16.89 -3.02 -0.05 -19.67 16 21 C -0.13 -2.65 5.07 30.65 0.16 -2.49 16 22 C 0.07 1.42 5.29 86.33 0.46 1.88 16 23 H 0.27 16.23 8.31 -92.71 -0.77 15.46 16 24 H 0.01 0.58 7.20 -2.39 -0.02 0.56 16 25 H 0.00 0.17 7.57 -2.38 -0.02 0.15 16 26 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.04 1.40 6.71 -2.39 -0.02 1.38 16 28 H 0.08 2.17 7.79 -2.39 -0.02 2.15 16 29 H 0.08 1.58 8.00 -2.39 -0.02 1.56 16 30 H 0.06 1.27 7.76 -2.39 -0.02 1.25 16 31 H 0.07 1.87 6.65 -2.39 -0.02 1.85 16 32 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.06 2.20 7.79 -2.38 -0.02 2.18 16 34 H 0.39 0.97 7.58 -74.05 -0.56 0.41 16 35 H 0.42 0.60 7.33 -92.70 -0.68 -0.08 16 36 H 0.41 3.64 8.93 -92.71 -0.83 2.82 16 37 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 38 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 39 H 0.06 1.02 7.76 -2.39 -0.02 1.00 16 40 H 0.08 1.70 7.93 -2.39 -0.02 1.68 16 Total: -1.00 -86.49 322.19 -4.02 -90.51 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -1.06 Total: 8.38 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: 3.77 Total: -5.40 kcal Atomic # 7 Polarization: -85.91 SS G_CDS: -5.28 Total: -91.20 kcal Atomic # 8 Polarization: -45.86 SS G_CDS: -3.33 Total: -49.19 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.88 Total: 46.90 kcal Total: -86.49 -4.02 -90.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385337361.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.326 kcal (2) G-P(sol) polarization free energy of solvation -86.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds