Wall clock time and date at job start Mon Mar 30 2020 04:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86808 * 120.00349 * 2 1 4 4 H 1.48500 * 109.47117 * 269.99894 * 3 2 1 5 5 H 1.48500 * 109.46872 * 30.00163 * 3 2 1 6 6 H 1.48497 * 109.46894 * 149.99963 * 3 2 1 7 7 C 1.37876 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00115 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99937 * 0.27607 * 7 2 1 10 10 O 1.42900 * 109.47169 * 179.72407 * 9 7 2 11 11 C 1.42900 * 113.99919 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47225 * 179.97438 * 11 10 9 13 13 N 1.46900 * 109.46599 * 64.78722 * 12 11 10 14 14 C 1.46847 * 110.99879 * 200.01224 * 13 12 11 15 15 C 1.53038 * 109.52578 * 174.16682 * 14 13 12 16 16 C 1.53118 * 109.27963 * 59.17457 * 15 14 13 17 17 C 1.53116 * 109.16201 * 302.34734 * 16 15 14 18 18 O 1.42899 * 109.50897 * 297.71570 * 17 16 15 19 19 C 1.50700 * 109.50401 * 177.59155 * 17 16 15 20 20 N 1.34782 * 119.99416 * 85.19996 * 19 17 16 21 21 O 1.21274 * 120.00457 * 265.20312 * 19 17 16 22 22 C 1.46844 * 111.00081 * 75.80341 * 13 12 11 23 23 H 0.97007 * 119.99927 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.46724 * 299.71980 * 9 7 2 25 25 H 1.08995 * 109.47104 * 59.72090 * 9 7 2 26 26 H 1.08992 * 109.47499 * 300.00392 * 11 10 9 27 27 H 1.09001 * 109.46459 * 60.00565 * 11 10 9 28 28 H 1.08999 * 109.47319 * 184.78875 * 12 11 10 29 29 H 1.09008 * 109.46974 * 304.79235 * 12 11 10 30 30 H 1.09003 * 109.46251 * 294.17766 * 14 13 12 31 31 H 1.08997 * 109.46522 * 54.14644 * 14 13 12 32 32 H 1.09002 * 109.49878 * 299.23494 * 15 14 13 33 33 H 1.09000 * 109.50555 * 179.12047 * 15 14 13 34 34 H 1.09005 * 109.52207 * 182.44638 * 16 15 14 35 35 H 1.08997 * 109.57193 * 62.28464 * 16 15 14 36 36 H 0.96704 * 113.99517 * 299.80619 * 18 17 16 37 37 H 0.96994 * 120.00332 * 0.02562 * 20 19 17 38 38 H 0.97002 * 119.99377 * 179.97438 * 20 19 17 39 39 H 1.09004 * 109.46099 * 305.85452 * 22 13 12 40 40 H 1.09000 * 109.46305 * 65.83058 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0052 10 8 2.1794 -3.5853 -0.0099 11 6 1.5648 -4.8754 -0.0150 12 6 2.6477 -5.9563 -0.0204 13 7 3.4120 -5.8899 1.2324 14 6 4.7156 -6.5505 1.0893 15 6 5.5398 -6.3366 2.3608 16 6 4.7817 -6.9161 3.5583 17 6 3.4086 -6.2456 3.6561 18 8 3.5767 -4.8449 3.8840 19 6 2.6326 -6.8522 4.7966 20 7 2.8014 -6.3858 6.0498 21 8 1.8562 -7.7599 4.5869 22 6 2.6461 -6.4622 2.3470 23 1 -0.4850 0.8401 0.0004 24 1 0.6243 -2.5607 0.8846 25 1 0.6242 -2.5530 -0.8953 26 1 0.9450 -4.9861 0.8747 27 1 0.9445 -4.9787 -0.9053 28 1 2.1814 -6.9374 -0.1100 29 1 3.3186 -5.7943 -0.8642 30 1 4.5659 -7.6183 0.9290 31 1 5.2461 -6.1263 0.2369 32 1 5.7016 -5.2696 2.5143 33 1 6.5012 -6.8402 2.2604 34 1 5.3451 -6.7273 4.4721 35 1 4.6538 -7.9902 3.4244 36 1 4.0531 -4.6334 4.6985 37 1 3.4220 -5.6596 6.2176 38 1 2.3016 -6.7760 6.7839 39 1 1.6735 -5.9739 2.4080 40 1 2.5063 -7.5304 2.1809 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385338467.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:00 Heat of formation + Delta-G solvation = -130.419907 kcal Electronic energy + Delta-G solvation = -22011.717509 eV Core-core repulsion = 18633.476435 eV Total energy + Delta-G solvation = -3378.241074 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.67714 -38.38936 -36.77797 -35.83825 -33.66924 -33.14789 -32.42252 -30.30632 -28.88591 -26.67555 -24.36153 -24.21350 -22.17338 -21.27750 -20.75639 -19.81565 -18.51364 -17.13341 -16.46732 -16.24600 -15.60673 -15.54686 -15.00210 -14.64341 -14.52857 -14.44246 -14.16509 -14.07778 -13.33871 -12.88700 -12.83778 -12.61187 -12.37951 -11.98739 -11.69830 -11.38157 -11.17146 -11.02608 -10.94919 -10.73498 -10.67171 -10.49325 -10.18241 -9.98138 -9.86209 -9.58356 -8.95227 -8.66499 -8.00794 -7.94427 -5.99441 -3.99492 2.31547 3.09748 3.37135 3.41511 3.47879 4.03189 4.11695 4.37762 4.44960 4.52818 4.70110 4.95972 5.06189 5.12527 5.36963 5.40449 5.45022 5.47222 5.60485 5.67961 5.72807 5.78801 5.94329 5.99182 6.13710 6.23577 6.27930 6.42223 6.47290 6.91863 7.23685 7.28894 7.32896 7.52709 7.59357 7.92692 7.94293 8.30769 8.77511 9.16015 9.64680 11.12473 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.019755 B = 0.004590 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.050448 B = 6098.203187 C = 6427.059804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.054 3.946 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.505 4.505 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.377 6.377 11 C 0.069 3.931 12 C 0.062 3.938 13 N -0.512 5.512 14 C 0.054 3.946 15 C -0.111 4.111 16 C -0.141 4.141 17 C 0.126 3.874 18 O -0.511 6.511 19 C 0.500 3.500 20 N -0.851 5.851 21 O -0.536 6.536 22 C 0.083 3.917 23 H 0.262 0.738 24 H 0.002 0.998 25 H 0.000 1.000 26 H 0.034 0.966 27 H 0.037 0.963 28 H 0.041 0.959 29 H 0.082 0.918 30 H 0.026 0.974 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.363 0.637 37 H 0.400 0.600 38 H 0.403 0.597 39 H 0.087 0.913 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.108 -15.459 9.919 20.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.544 4.544 8 H 0.084 0.916 9 C 0.120 3.880 10 O -0.296 6.296 11 C -0.009 4.009 12 C -0.065 4.065 13 N -0.236 5.236 14 C -0.074 4.074 15 C -0.148 4.148 16 C -0.179 4.179 17 C 0.081 3.919 18 O -0.314 6.314 19 C 0.284 3.716 20 N -0.416 5.416 21 O -0.412 6.412 22 C -0.046 4.046 23 H 0.071 0.929 24 H 0.020 0.980 25 H 0.018 0.982 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.100 0.900 30 H 0.045 0.955 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.209 0.791 37 H 0.229 0.771 38 H 0.234 0.766 39 H 0.105 0.895 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.458 -15.343 9.106 20.194 hybrid contribution 0.173 0.189 0.922 0.957 sum 9.631 -15.154 10.028 20.566 Atomic orbital electron populations 1.69973 1.06093 1.26891 1.51190 1.24941 0.94928 0.99322 0.95449 0.86364 0.79711 0.82462 0.78099 1.20601 1.21224 1.19633 1.21068 0.94048 0.89375 1.49876 0.91569 1.20144 0.88876 0.83986 0.94949 1.87936 1.34480 1.12240 1.94976 1.22200 0.93766 0.86341 0.98585 1.22153 0.96432 0.96304 0.91656 1.61640 1.02800 1.55491 1.03691 1.22133 0.90885 0.95850 0.98490 1.21499 0.97262 1.02898 0.93166 1.22230 0.94671 1.00727 1.00273 1.21411 0.94519 0.82781 0.93191 1.87053 1.79083 1.19791 1.45466 1.21516 0.82405 0.82750 0.84939 1.43826 1.47809 1.40535 1.09394 1.90745 1.36484 1.29787 1.84219 1.21824 0.97121 0.97833 0.87809 0.92853 0.97987 0.98208 0.94767 0.94488 0.94126 0.90003 0.95546 0.90169 0.89665 0.91298 0.91165 0.90787 0.79080 0.77121 0.76639 0.89456 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.85 13.29 55.43 0.74 -27.12 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 22.44 29.54 -169.99 -5.02 17.42 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.51 -15.47 9.43 -34.44 -0.32 -15.79 16 8 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 9 C 0.19 5.63 5.69 36.01 0.20 5.84 16 10 O -0.38 -9.65 10.27 -35.23 -0.36 -10.01 16 11 C 0.07 1.39 6.13 37.16 0.23 1.62 16 12 C 0.06 0.99 5.39 -3.82 -0.02 0.97 16 13 N -0.51 -8.12 4.41 -234.66 -1.04 -9.16 16 14 C 0.05 0.68 5.43 -3.83 -0.02 0.66 16 15 C -0.11 -1.16 5.94 -26.65 -0.16 -1.32 16 16 C -0.14 -1.36 4.97 -26.61 -0.13 -1.50 16 17 C 0.13 1.57 0.94 -91.69 -0.09 1.48 16 18 O -0.51 -6.79 12.21 -35.23 -0.43 -7.22 16 19 C 0.50 6.13 7.00 -10.98 -0.08 6.05 16 20 N -0.85 -6.56 8.79 31.22 0.27 -6.29 16 21 O -0.54 -8.58 16.92 5.56 0.09 -8.49 16 22 C 0.08 1.25 3.81 -3.83 -0.01 1.24 16 23 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 24 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 25 H 0.00 0.00 8.14 -51.93 -0.42 -0.42 16 26 H 0.03 0.70 6.71 -51.93 -0.35 0.35 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.55 8.00 -51.93 -0.42 0.14 16 29 H 0.08 1.27 7.79 -51.92 -0.40 0.86 16 30 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.99 7.93 -51.93 -0.41 0.58 16 32 H 0.08 1.03 7.80 -51.93 -0.40 0.63 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.36 2.87 7.58 45.56 0.35 3.22 16 37 H 0.40 1.87 7.33 -40.82 -0.30 1.57 16 38 H 0.40 2.64 8.93 -40.82 -0.36 2.27 16 39 H 0.09 1.53 6.65 -51.93 -0.35 1.18 16 40 H 0.05 0.78 7.84 -51.93 -0.41 0.37 16 LS Contribution 326.60 15.07 4.92 4.92 Total: -1.00 -37.50 326.60 -6.88 -44.38 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -5.56 Total: 0.80 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -0.50 Total: 0.76 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: -0.02 Total: -42.56 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.70 Total: -25.72 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -37.50 -6.88 -44.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385338467.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.039 kcal (2) G-P(sol) polarization free energy of solvation -37.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds