Wall clock time and date at job start Mon Mar 30 2020 04:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86808 * 120.00349 * 2 1 4 4 H 1.48500 * 109.47117 * 269.99894 * 3 2 1 5 5 H 1.48500 * 109.46872 * 30.00163 * 3 2 1 6 6 H 1.48497 * 109.46894 * 149.99963 * 3 2 1 7 7 C 1.37876 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00115 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99937 * 0.27607 * 7 2 1 10 10 O 1.42900 * 109.47169 * 179.72407 * 9 7 2 11 11 C 1.42900 * 113.99919 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47225 * 179.97438 * 11 10 9 13 13 N 1.46900 * 109.46599 * 64.78722 * 12 11 10 14 14 C 1.46847 * 110.99879 * 200.01224 * 13 12 11 15 15 C 1.53038 * 109.52578 * 174.16682 * 14 13 12 16 16 C 1.53118 * 109.27963 * 59.17457 * 15 14 13 17 17 C 1.53116 * 109.16201 * 302.34734 * 16 15 14 18 18 O 1.42899 * 109.50897 * 297.71570 * 17 16 15 19 19 C 1.50700 * 109.50401 * 177.59155 * 17 16 15 20 20 N 1.34782 * 119.99416 * 85.19996 * 19 17 16 21 21 O 1.21274 * 120.00457 * 265.20312 * 19 17 16 22 22 C 1.46844 * 111.00081 * 75.80341 * 13 12 11 23 23 H 0.97007 * 119.99927 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.46724 * 299.71980 * 9 7 2 25 25 H 1.08995 * 109.47104 * 59.72090 * 9 7 2 26 26 H 1.08992 * 109.47499 * 300.00392 * 11 10 9 27 27 H 1.09001 * 109.46459 * 60.00565 * 11 10 9 28 28 H 1.08999 * 109.47319 * 184.78875 * 12 11 10 29 29 H 1.09008 * 109.46974 * 304.79235 * 12 11 10 30 30 H 1.09003 * 109.46251 * 294.17766 * 14 13 12 31 31 H 1.08997 * 109.46522 * 54.14644 * 14 13 12 32 32 H 1.09002 * 109.49878 * 299.23494 * 15 14 13 33 33 H 1.09000 * 109.50555 * 179.12047 * 15 14 13 34 34 H 1.09005 * 109.52207 * 182.44638 * 16 15 14 35 35 H 1.08997 * 109.57193 * 62.28464 * 16 15 14 36 36 H 0.96704 * 113.99517 * 299.80619 * 18 17 16 37 37 H 0.96994 * 120.00332 * 0.02562 * 20 19 17 38 38 H 0.97002 * 119.99377 * 179.97438 * 20 19 17 39 39 H 1.09004 * 109.46099 * 305.85452 * 22 13 12 40 40 H 1.09000 * 109.46305 * 65.83058 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0052 10 8 2.1794 -3.5853 -0.0099 11 6 1.5648 -4.8754 -0.0150 12 6 2.6477 -5.9563 -0.0204 13 7 3.4120 -5.8899 1.2324 14 6 4.7156 -6.5505 1.0893 15 6 5.5398 -6.3366 2.3608 16 6 4.7817 -6.9161 3.5583 17 6 3.4086 -6.2456 3.6561 18 8 3.5767 -4.8449 3.8840 19 6 2.6326 -6.8522 4.7966 20 7 2.8014 -6.3858 6.0498 21 8 1.8562 -7.7599 4.5869 22 6 2.6461 -6.4622 2.3470 23 1 -0.4850 0.8401 0.0004 24 1 0.6243 -2.5607 0.8846 25 1 0.6242 -2.5530 -0.8953 26 1 0.9450 -4.9861 0.8747 27 1 0.9445 -4.9787 -0.9053 28 1 2.1814 -6.9374 -0.1100 29 1 3.3186 -5.7943 -0.8642 30 1 4.5659 -7.6183 0.9290 31 1 5.2461 -6.1263 0.2369 32 1 5.7016 -5.2696 2.5143 33 1 6.5012 -6.8402 2.2604 34 1 5.3451 -6.7273 4.4721 35 1 4.6538 -7.9902 3.4244 36 1 4.0531 -4.6334 4.6985 37 1 3.4220 -5.6596 6.2176 38 1 2.3016 -6.7760 6.7839 39 1 1.6735 -5.9739 2.4080 40 1 2.5063 -7.5304 2.1809 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385338467.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:00 Heat of formation + Delta-G solvation = -164.220647 kcal Electronic energy + Delta-G solvation = -22013.183219 eV Core-core repulsion = 18633.476435 eV Total energy + Delta-G solvation = -3379.706784 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.65043 -39.51190 -38.40798 -37.16062 -34.97015 -34.50145 -33.97238 -31.31548 -30.48721 -28.72815 -25.45237 -25.28559 -24.43335 -22.48851 -21.84216 -20.80666 -19.38037 -18.58771 -18.05074 -17.55829 -17.34155 -16.72111 -16.43058 -16.03809 -15.84771 -15.61909 -15.49731 -15.40857 -14.79410 -14.44251 -13.93858 -13.80271 -13.62711 -13.35238 -13.19752 -12.97172 -12.75763 -12.57109 -12.48070 -12.16189 -12.03695 -11.88095 -11.72318 -11.28362 -11.16392 -10.83052 -10.79951 -10.54538 -10.15236 -9.12241 -8.28665 -6.40774 1.37297 1.40953 1.44936 1.57220 2.24689 2.37920 2.97010 3.04764 3.20528 3.27122 3.49186 3.65067 3.87635 4.11322 4.19952 4.25667 4.27725 4.43444 4.48502 4.57602 4.66741 4.71578 4.71941 4.83523 4.87150 4.93103 5.02136 5.12027 5.20863 5.43077 5.58443 5.75904 6.00034 6.06931 6.21209 6.24039 6.59993 6.80251 6.88996 7.14633 7.31270 8.84184 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.019755 B = 0.004590 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.050448 B = 6098.203187 C = 6427.059804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.986 3.014 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.263 1.263 7 C -0.541 4.541 8 H 0.061 0.939 9 C 0.211 3.789 10 O -0.389 6.389 11 C 0.061 3.939 12 C 0.069 3.931 13 N -0.537 5.537 14 C 0.050 3.950 15 C -0.106 4.106 16 C -0.133 4.133 17 C 0.128 3.872 18 O -0.538 6.538 19 C 0.499 3.501 20 N -0.827 5.827 21 O -0.582 6.582 22 C 0.082 3.918 23 H 0.270 0.730 24 H -0.026 1.026 25 H -0.018 1.018 26 H 0.024 0.976 27 H 0.046 0.954 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.385 0.615 37 H 0.417 0.583 38 H 0.412 0.588 39 H 0.050 0.950 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.360 -15.295 10.779 22.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.194 4.194 3 Si 0.808 3.192 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.187 1.187 7 C -0.579 4.579 8 H 0.080 0.920 9 C 0.136 3.864 10 O -0.308 6.308 11 C -0.017 4.017 12 C -0.059 4.059 13 N -0.262 5.262 14 C -0.078 4.078 15 C -0.144 4.144 16 C -0.171 4.171 17 C 0.083 3.917 18 O -0.345 6.345 19 C 0.282 3.718 20 N -0.392 5.392 21 O -0.461 6.461 22 C -0.046 4.046 23 H 0.079 0.921 24 H -0.008 1.008 25 H 0.000 1.000 26 H 0.042 0.958 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.107 0.893 30 H 0.061 0.939 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.097 0.903 36 H 0.234 0.766 37 H 0.249 0.751 38 H 0.244 0.756 39 H 0.069 0.931 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.745 -15.177 10.014 21.646 hybrid contribution -0.579 0.098 0.686 0.903 sum 11.166 -15.080 10.700 21.600 Atomic orbital electron populations 1.70092 1.07901 1.28553 1.50860 1.26009 0.95956 1.03500 0.93939 0.85147 0.78365 0.76773 0.78886 1.19151 1.19922 1.18732 1.21357 0.94022 0.90705 1.51794 0.92046 1.19761 0.88713 0.85282 0.92692 1.87891 1.34389 1.13607 1.94951 1.22534 0.95590 0.85047 0.98512 1.22073 0.95651 0.95694 0.92476 1.61594 1.04111 1.57016 1.03469 1.22266 0.89247 0.96471 0.99769 1.21496 0.98282 1.02246 0.92363 1.22214 0.92926 1.00435 1.01496 1.21321 0.95817 0.82739 0.91824 1.87001 1.79816 1.20438 1.47230 1.21525 0.81886 0.82295 0.86059 1.43628 1.47311 1.40126 1.08182 1.90725 1.38435 1.31952 1.85025 1.21749 0.96032 0.97395 0.89464 0.92137 1.00784 1.00032 0.95809 0.93547 0.91362 0.89322 0.93891 0.90320 0.91404 0.88292 0.87919 0.90331 0.76563 0.75122 0.75607 0.93137 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.40 13.29 21.45 0.28 -58.11 16 2 C 0.00 0.23 5.46 84.66 0.46 0.69 16 3 Si 0.99 45.71 29.54 68.60 2.03 47.73 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 5 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 6 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.54 -33.87 9.43 25.60 0.24 -33.63 16 8 H 0.06 3.81 7.81 -2.91 -0.02 3.78 16 9 C 0.21 12.74 5.69 71.24 0.41 13.14 16 10 O -0.39 -20.66 10.27 -148.98 -1.53 -22.19 16 11 C 0.06 2.53 6.13 71.98 0.44 2.97 16 12 C 0.07 2.20 5.39 86.30 0.47 2.66 16 13 N -0.54 -16.97 4.41 -896.34 -3.95 -20.93 16 14 C 0.05 1.16 5.43 86.33 0.47 1.63 16 15 C -0.11 -1.97 5.94 30.65 0.18 -1.79 16 16 C -0.13 -2.22 4.97 30.67 0.15 -2.07 16 17 C 0.13 3.07 0.94 -11.49 -0.01 3.06 16 18 O -0.54 -13.97 12.21 -148.98 -1.82 -15.79 16 19 C 0.50 11.82 7.00 87.66 0.61 12.44 16 20 N -0.83 -11.29 8.79 -173.53 -1.52 -12.81 16 21 O -0.58 -18.70 16.92 -3.01 -0.05 -18.75 16 22 C 0.08 2.53 3.81 86.33 0.33 2.86 16 23 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 24 H -0.03 -1.65 8.14 -2.39 -0.02 -1.66 16 25 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 26 H 0.02 1.03 6.71 -2.39 -0.02 1.01 16 27 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.07 1.81 8.00 -2.39 -0.02 1.79 16 29 H 0.09 2.69 7.79 -2.38 -0.02 2.68 16 30 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.08 1.84 7.93 -2.39 -0.02 1.82 16 32 H 0.07 1.52 7.80 -2.39 -0.02 1.50 16 33 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.38 5.43 7.58 -74.05 -0.56 4.87 16 37 H 0.42 2.86 7.33 -92.71 -0.68 2.18 16 38 H 0.41 4.67 8.93 -92.71 -0.83 3.84 16 39 H 0.05 1.88 6.65 -2.38 -0.02 1.86 16 40 H 0.06 1.67 7.84 -2.39 -0.02 1.65 16 Total: -1.00 -83.40 326.60 -3.82 -87.22 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -1.00 Total: 11.67 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: 3.75 Total: 1.96 kcal Atomic # 7 Polarization: -86.66 SS G_CDS: -5.19 Total: -91.85 kcal Atomic # 8 Polarization: -53.33 SS G_CDS: -3.40 Total: -56.73 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -83.40 -3.82 -87.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385338467.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.003 kcal (2) G-P(sol) polarization free energy of solvation -83.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds