Wall clock time and date at job start Mon Mar 30 2020 04:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99726 * 2 1 4 4 H 1.48500 * 109.46911 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46931 * 119.99990 * 3 2 1 6 6 H 1.48495 * 109.47283 * 239.99747 * 3 2 1 7 7 C 1.37876 * 120.00581 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00394 * 180.02562 * 7 2 1 9 9 C 1.50710 * 119.99785 * 359.97438 * 7 2 1 10 10 O 1.42895 * 109.46953 * 179.97438 * 9 7 2 11 11 C 1.42903 * 113.99913 * 179.97438 * 10 9 7 12 12 C 1.52993 * 109.47185 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.47069 * 62.32223 * 12 11 10 14 14 C 1.46846 * 111.00252 * 52.03652 * 13 12 11 15 15 C 1.53033 * 109.52767 * 185.83879 * 14 13 12 16 16 C 1.53120 * 109.27701 * 300.81865 * 15 14 13 17 17 C 1.53119 * 109.15961 * 57.65347 * 16 15 14 18 18 O 1.42900 * 109.50362 * 62.28472 * 17 16 15 19 19 C 1.50700 * 109.53457 * 182.38101 * 17 16 15 20 20 N 1.34773 * 120.00521 * 274.82451 * 19 17 16 21 21 O 1.21284 * 119.99683 * 94.82729 * 19 17 16 22 22 C 1.46846 * 110.99907 * 176.24448 * 13 12 11 23 23 H 0.96991 * 120.00295 * 359.97438 * 1 2 3 24 24 H 1.08992 * 109.47033 * 300.00015 * 9 7 2 25 25 H 1.09002 * 109.46361 * 60.00171 * 9 7 2 26 26 H 1.08995 * 109.47254 * 300.00655 * 11 10 9 27 27 H 1.08999 * 109.46686 * 59.99971 * 11 10 9 28 28 H 1.09000 * 109.47318 * 182.32033 * 12 11 10 29 29 H 1.09004 * 109.47265 * 302.32292 * 12 11 10 30 30 H 1.09008 * 109.46197 * 305.85839 * 14 13 12 31 31 H 1.09000 * 109.46392 * 65.81749 * 14 13 12 32 32 H 1.08995 * 109.50370 * 180.87375 * 15 14 13 33 33 H 1.09002 * 109.53107 * 60.77885 * 15 14 13 34 34 H 1.08992 * 109.52097 * 297.74847 * 16 15 14 35 35 H 1.09004 * 109.57385 * 177.58685 * 16 15 14 36 36 H 0.96699 * 114.00090 * 60.19802 * 18 17 16 37 37 H 0.97006 * 119.99637 * 359.97438 * 20 19 17 38 38 H 0.96997 * 120.00189 * 179.97438 * 20 19 17 39 39 H 1.09007 * 109.46443 * 294.17468 * 22 13 12 40 40 H 1.09001 * 109.46676 * 54.14643 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2839 2.7465 0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1028 1.6965 -1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0017 10 8 2.1798 -3.5852 0.0015 11 6 1.5653 -4.8754 0.0031 12 6 2.6483 -5.9561 0.0033 13 7 3.4502 -5.8454 1.2292 14 6 2.5914 -5.8286 2.4202 15 6 3.4453 -5.5669 3.6629 16 6 4.5037 -6.6661 3.7896 17 6 5.3537 -6.6944 2.5163 18 8 6.0364 -5.4476 2.3706 19 6 6.3607 -7.8118 2.6074 20 7 7.5388 -7.6083 3.2296 21 8 6.1110 -8.8944 2.1208 22 6 4.4444 -6.9233 1.3068 23 1 -0.4850 0.8399 0.0004 24 1 0.6249 -2.5564 0.8919 25 1 0.6242 -2.5575 -0.8881 26 1 0.9461 -4.9818 0.8938 27 1 0.9442 -4.9831 -0.8861 28 1 2.1802 -6.9396 -0.0370 29 1 3.2931 -5.8246 -0.8657 30 1 1.8458 -5.0398 2.3192 31 1 2.0900 -6.7912 2.5201 32 1 2.8097 -5.5699 4.5484 33 1 3.9360 -4.5980 3.5705 34 1 4.0133 -7.6305 3.9217 35 1 5.1420 -6.4612 4.6491 36 1 6.6317 -5.2372 3.1031 37 1 7.7387 -6.7424 3.6184 38 1 8.1868 -8.3277 3.2885 39 1 3.9344 -7.8810 1.4119 40 1 5.0449 -6.9298 0.3971 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385338468.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:02 Heat of formation + Delta-G solvation = -128.405235 kcal Electronic energy + Delta-G solvation = -21872.736425 eV Core-core repulsion = 18494.582714 eV Total energy + Delta-G solvation = -3378.153711 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.73132 -38.49035 -36.93363 -35.81486 -33.75539 -33.09561 -32.47192 -30.44211 -28.78980 -26.72257 -24.76601 -23.69335 -22.24162 -21.89757 -20.34263 -19.81673 -18.54391 -17.19600 -16.52533 -16.28943 -15.71730 -15.55030 -14.99940 -14.79186 -14.57096 -14.47450 -14.24264 -14.04067 -13.31412 -13.14346 -12.75068 -12.46984 -12.38641 -12.08108 -11.69774 -11.48078 -11.28829 -10.94923 -10.85985 -10.77076 -10.66436 -10.39096 -10.24386 -10.06873 -9.91577 -9.61781 -9.02161 -8.71698 -8.07094 -7.94534 -6.03871 -4.04430 2.23440 3.02337 3.37371 3.39331 3.44071 3.98798 4.08470 4.34241 4.41417 4.53431 4.69063 4.95459 5.09652 5.15870 5.32578 5.41884 5.44513 5.51877 5.60929 5.68351 5.74500 5.82313 5.91446 5.99553 6.12410 6.28815 6.36582 6.38240 6.41762 6.83151 7.17225 7.26681 7.34087 7.44561 7.50771 7.86019 7.88538 8.24710 8.69892 9.10704 9.60188 11.07876 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.025844 B = 0.004097 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.175511 B = 6833.012709 C = 7305.807101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.055 3.945 3 Si 0.907 3.093 4 H -0.287 1.287 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.509 4.509 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.376 6.376 11 C 0.062 3.938 12 C 0.062 3.938 13 N -0.511 5.511 14 C 0.048 3.952 15 C -0.110 4.110 16 C -0.141 4.141 17 C 0.127 3.873 18 O -0.516 6.516 19 C 0.500 3.500 20 N -0.851 5.851 21 O -0.536 6.536 22 C 0.083 3.917 23 H 0.263 0.737 24 H 0.002 0.998 25 H 0.002 0.998 26 H 0.038 0.962 27 H 0.040 0.960 28 H 0.037 0.963 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.025 0.975 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.364 0.636 37 H 0.400 0.600 38 H 0.402 0.598 39 H 0.054 0.946 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.983 -15.178 9.385 20.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.547 4.547 8 H 0.085 0.915 9 C 0.119 3.881 10 O -0.296 6.296 11 C -0.016 4.016 12 C -0.065 4.065 13 N -0.235 5.235 14 C -0.079 4.079 15 C -0.148 4.148 16 C -0.179 4.179 17 C 0.082 3.918 18 O -0.320 6.320 19 C 0.284 3.716 20 N -0.416 5.416 21 O -0.412 6.412 22 C -0.045 4.045 23 H 0.073 0.927 24 H 0.020 0.980 25 H 0.019 0.981 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.043 0.957 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.211 0.789 37 H 0.229 0.771 38 H 0.233 0.767 39 H 0.072 0.928 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.579 -15.176 8.416 20.324 hybrid contribution 0.383 0.148 0.832 0.928 sum 10.962 -15.028 9.248 20.774 Atomic orbital electron populations 1.69952 1.06103 1.27112 1.50977 1.24937 0.94932 0.99353 0.95314 0.86410 0.79291 0.82000 0.78846 1.21289 1.20036 1.20048 1.21040 0.94109 0.89326 1.50237 0.91501 1.20170 0.88861 0.84011 0.95020 1.87995 1.34413 1.12164 1.94985 1.22338 0.93877 0.86440 0.98988 1.22145 0.95438 0.95969 0.92947 1.61689 1.15722 1.44258 1.01842 1.22235 0.95573 1.00303 0.89827 1.21489 0.96679 0.99348 0.97243 1.22242 0.98873 1.01223 0.95569 1.21424 0.90376 0.82043 0.97965 1.86962 1.61047 1.36331 1.47627 1.21535 0.83194 0.90109 0.76767 1.43838 1.19320 1.18091 1.60377 1.90751 1.77692 1.26505 1.46276 1.21772 0.93659 0.92876 0.96236 0.92734 0.98021 0.98066 0.94403 0.94190 0.94454 0.89916 0.89015 0.95666 0.91195 0.89546 0.90797 0.91191 0.78921 0.77125 0.76654 0.92772 0.89870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.29 55.43 0.74 -26.59 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 22.17 29.54 -169.99 -5.02 17.15 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.51 -15.28 9.43 -34.44 -0.32 -15.61 16 8 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 9 C 0.19 5.42 5.69 36.01 0.20 5.62 16 10 O -0.38 -9.33 10.23 -35.23 -0.36 -9.69 16 11 C 0.06 1.17 5.57 37.15 0.21 1.38 16 12 C 0.06 1.00 5.52 -3.83 -0.02 0.98 16 13 N -0.51 -8.19 4.55 -234.67 -1.07 -9.25 16 14 C 0.05 0.70 5.04 -3.84 -0.02 0.68 16 15 C -0.11 -1.33 5.94 -26.65 -0.16 -1.49 16 16 C -0.14 -1.41 4.97 -26.61 -0.13 -1.54 16 17 C 0.13 1.47 0.94 -91.69 -0.09 1.38 16 18 O -0.52 -6.06 12.21 -35.23 -0.43 -6.49 16 19 C 0.50 5.53 7.00 -10.99 -0.08 5.45 16 20 N -0.85 -5.50 8.78 31.22 0.27 -5.22 16 21 O -0.54 -7.97 16.92 5.55 0.09 -7.87 16 22 C 0.08 1.17 3.98 -3.83 -0.02 1.16 16 23 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 24 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 25 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 26 H 0.04 0.69 6.05 -51.93 -0.31 0.38 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 30 H 0.09 1.52 5.79 -51.92 -0.30 1.22 16 31 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 1.20 7.80 -51.93 -0.40 0.80 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.36 2.41 7.58 45.56 0.35 2.75 16 37 H 0.40 1.38 7.33 -40.82 -0.30 1.08 16 38 H 0.40 2.14 8.93 -40.82 -0.36 1.78 16 39 H 0.05 0.75 7.84 -51.93 -0.41 0.34 16 40 H 0.08 1.23 8.12 -51.93 -0.42 0.81 16 LS Contribution 325.21 15.07 4.90 4.90 Total: -1.00 -36.34 325.21 -6.91 -43.25 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -5.52 Total: 0.27 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -0.52 Total: -0.46 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: -0.06 Total: -41.06 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.70 Total: -24.06 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -36.34 -6.91 -43.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385338468.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.155 kcal (2) G-P(sol) polarization free energy of solvation -36.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds