Wall clock time and date at job start Mon Mar 30 2020 04:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99726 * 2 1 4 4 H 1.48500 * 109.46911 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46931 * 119.99990 * 3 2 1 6 6 H 1.48495 * 109.47283 * 239.99747 * 3 2 1 7 7 C 1.37876 * 120.00581 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00394 * 180.02562 * 7 2 1 9 9 C 1.50710 * 119.99785 * 359.97438 * 7 2 1 10 10 O 1.42895 * 109.46953 * 179.97438 * 9 7 2 11 11 C 1.42903 * 113.99913 * 179.97438 * 10 9 7 12 12 C 1.52993 * 109.47185 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.47069 * 62.32223 * 12 11 10 14 14 C 1.46846 * 111.00252 * 52.03652 * 13 12 11 15 15 C 1.53033 * 109.52767 * 185.83879 * 14 13 12 16 16 C 1.53120 * 109.27701 * 300.81865 * 15 14 13 17 17 C 1.53119 * 109.15961 * 57.65347 * 16 15 14 18 18 O 1.42900 * 109.50362 * 62.28472 * 17 16 15 19 19 C 1.50700 * 109.53457 * 182.38101 * 17 16 15 20 20 N 1.34773 * 120.00521 * 274.82451 * 19 17 16 21 21 O 1.21284 * 119.99683 * 94.82729 * 19 17 16 22 22 C 1.46846 * 110.99907 * 176.24448 * 13 12 11 23 23 H 0.96991 * 120.00295 * 359.97438 * 1 2 3 24 24 H 1.08992 * 109.47033 * 300.00015 * 9 7 2 25 25 H 1.09002 * 109.46361 * 60.00171 * 9 7 2 26 26 H 1.08995 * 109.47254 * 300.00655 * 11 10 9 27 27 H 1.08999 * 109.46686 * 59.99971 * 11 10 9 28 28 H 1.09000 * 109.47318 * 182.32033 * 12 11 10 29 29 H 1.09004 * 109.47265 * 302.32292 * 12 11 10 30 30 H 1.09008 * 109.46197 * 305.85839 * 14 13 12 31 31 H 1.09000 * 109.46392 * 65.81749 * 14 13 12 32 32 H 1.08995 * 109.50370 * 180.87375 * 15 14 13 33 33 H 1.09002 * 109.53107 * 60.77885 * 15 14 13 34 34 H 1.08992 * 109.52097 * 297.74847 * 16 15 14 35 35 H 1.09004 * 109.57385 * 177.58685 * 16 15 14 36 36 H 0.96699 * 114.00090 * 60.19802 * 18 17 16 37 37 H 0.97006 * 119.99637 * 359.97438 * 20 19 17 38 38 H 0.96997 * 120.00189 * 179.97438 * 20 19 17 39 39 H 1.09007 * 109.46443 * 294.17468 * 22 13 12 40 40 H 1.09001 * 109.46676 * 54.14643 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2839 2.7465 0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1028 1.6965 -1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0017 10 8 2.1798 -3.5852 0.0015 11 6 1.5653 -4.8754 0.0031 12 6 2.6483 -5.9561 0.0033 13 7 3.4502 -5.8454 1.2292 14 6 2.5914 -5.8286 2.4202 15 6 3.4453 -5.5669 3.6629 16 6 4.5037 -6.6661 3.7896 17 6 5.3537 -6.6944 2.5163 18 8 6.0364 -5.4476 2.3706 19 6 6.3607 -7.8118 2.6074 20 7 7.5388 -7.6083 3.2296 21 8 6.1110 -8.8944 2.1208 22 6 4.4444 -6.9233 1.3068 23 1 -0.4850 0.8399 0.0004 24 1 0.6249 -2.5564 0.8919 25 1 0.6242 -2.5575 -0.8881 26 1 0.9461 -4.9818 0.8938 27 1 0.9442 -4.9831 -0.8861 28 1 2.1802 -6.9396 -0.0370 29 1 3.2931 -5.8246 -0.8657 30 1 1.8458 -5.0398 2.3192 31 1 2.0900 -6.7912 2.5201 32 1 2.8097 -5.5699 4.5484 33 1 3.9360 -4.5980 3.5705 34 1 4.0133 -7.6305 3.9217 35 1 5.1420 -6.4612 4.6491 36 1 6.6317 -5.2372 3.1031 37 1 7.7387 -6.7424 3.6184 38 1 8.1868 -8.3277 3.2885 39 1 3.9344 -7.8810 1.4119 40 1 5.0449 -6.9298 0.3971 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385338468.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:02 Heat of formation + Delta-G solvation = -161.021710 kcal Electronic energy + Delta-G solvation = -21874.150782 eV Core-core repulsion = 18494.582714 eV Total energy + Delta-G solvation = -3379.568068 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.64690 -39.62144 -38.41246 -37.12319 -34.95172 -34.47579 -33.94532 -31.53576 -30.30097 -28.71439 -25.84677 -24.81283 -24.40796 -23.03611 -21.42912 -20.80154 -19.33726 -18.57489 -17.99497 -17.63264 -17.37112 -16.79889 -16.42951 -16.05537 -15.82002 -15.59020 -15.43343 -15.36397 -14.87371 -14.59862 -13.94217 -13.74628 -13.50995 -13.35539 -13.26144 -13.00417 -12.76518 -12.57903 -12.44419 -12.28871 -12.01841 -11.81130 -11.66585 -11.29842 -11.20049 -10.81373 -10.77147 -10.53087 -10.14533 -9.13528 -8.28722 -6.40469 1.39281 1.41568 1.46750 1.55096 2.24941 2.37788 2.95686 3.04892 3.20780 3.25712 3.50300 3.65230 3.89805 4.05132 4.15969 4.23391 4.25297 4.40298 4.55022 4.55870 4.61638 4.67134 4.72533 4.82187 4.87331 4.95814 4.98755 5.13928 5.21680 5.40745 5.58758 5.78629 6.00324 6.07510 6.18925 6.23531 6.59738 6.80082 6.89037 7.17238 7.31643 8.83525 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.025844 B = 0.004097 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.175511 B = 6833.012709 C = 7305.807101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.982 3.018 4 H -0.274 1.274 5 H -0.264 1.264 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.210 3.790 10 O -0.392 6.392 11 C 0.054 3.946 12 C 0.068 3.932 13 N -0.533 5.533 14 C 0.045 3.955 15 C -0.106 4.106 16 C -0.132 4.132 17 C 0.130 3.870 18 O -0.537 6.537 19 C 0.503 3.497 20 N -0.826 5.826 21 O -0.580 6.580 22 C 0.082 3.918 23 H 0.270 0.730 24 H -0.016 1.016 25 H -0.018 1.018 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.041 0.959 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.386 0.614 37 H 0.417 0.583 38 H 0.412 0.588 39 H 0.056 0.944 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.519 -15.024 10.778 22.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.191 4.191 3 Si 0.805 3.195 4 H -0.199 1.199 5 H -0.189 1.189 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.077 0.923 9 C 0.135 3.865 10 O -0.312 6.312 11 C -0.023 4.023 12 C -0.060 4.060 13 N -0.258 5.258 14 C -0.082 4.082 15 C -0.144 4.144 16 C -0.170 4.170 17 C 0.085 3.915 18 O -0.344 6.344 19 C 0.286 3.714 20 N -0.392 5.392 21 O -0.460 6.460 22 C -0.046 4.046 23 H 0.079 0.921 24 H 0.002 0.998 25 H -0.001 1.001 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.107 0.893 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.122 0.878 36 H 0.236 0.764 37 H 0.249 0.751 38 H 0.245 0.755 39 H 0.074 0.926 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.160 -15.019 9.850 21.691 hybrid contribution -0.098 0.053 0.404 0.420 sum 12.062 -14.966 10.255 21.786 Atomic orbital electron populations 1.70060 1.07745 1.28633 1.50716 1.25936 0.95926 1.03285 0.93940 0.85254 0.78111 0.76778 0.79385 1.19922 1.18915 1.19174 1.21341 0.93990 0.90890 1.51998 0.92282 1.19783 0.88640 0.85004 0.93107 1.87946 1.34509 1.13666 1.95037 1.22645 0.95306 0.84637 0.99686 1.22074 0.94704 0.95950 0.93255 1.61668 1.16402 1.45620 1.02071 1.22248 0.95485 1.00008 0.90458 1.21452 0.97153 0.99112 0.96695 1.22204 0.98475 1.00443 0.95927 1.21267 0.90493 0.82265 0.97446 1.86917 1.61788 1.36368 1.49345 1.21380 0.84076 0.89121 0.76790 1.43623 1.17808 1.19277 1.58478 1.90738 1.78758 1.27954 1.48511 1.21757 0.93482 0.92278 0.97106 0.92092 0.99833 1.00057 0.93629 0.93456 0.91502 0.90638 0.91907 0.94092 0.89267 0.91587 0.90420 0.87818 0.76394 0.75108 0.75535 0.92629 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.91 13.29 21.45 0.28 -56.63 16 2 C 0.01 0.43 5.46 84.66 0.46 0.89 16 3 Si 0.98 45.15 29.54 68.60 2.03 47.17 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 5 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.54 -33.42 9.43 25.60 0.24 -33.18 16 8 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 9 C 0.21 12.19 5.69 71.24 0.41 12.59 16 10 O -0.39 -20.12 10.23 -148.98 -1.52 -21.65 16 11 C 0.05 2.12 5.57 71.98 0.40 2.52 16 12 C 0.07 2.19 5.52 86.30 0.48 2.66 16 13 N -0.53 -17.08 4.55 -896.35 -4.08 -21.16 16 14 C 0.05 1.31 5.04 86.32 0.44 1.74 16 15 C -0.11 -2.44 5.94 30.65 0.18 -2.26 16 16 C -0.13 -2.33 4.97 30.67 0.15 -2.17 16 17 C 0.13 2.81 0.94 -11.49 -0.01 2.80 16 18 O -0.54 -11.78 12.21 -148.98 -1.82 -13.60 16 19 C 0.50 10.20 7.00 87.66 0.61 10.81 16 20 N -0.83 -8.41 8.78 -173.53 -1.52 -9.93 16 21 O -0.58 -16.67 16.92 -3.04 -0.05 -16.72 16 22 C 0.08 2.29 3.98 86.33 0.34 2.63 16 23 H 0.27 15.29 8.31 -92.72 -0.77 14.52 16 24 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 25 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 26 H 0.05 1.71 6.05 -2.39 -0.01 1.70 16 27 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 30 H 0.06 2.15 5.79 -2.38 -0.01 2.13 16 31 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.07 1.79 7.80 -2.39 -0.02 1.77 16 34 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.39 4.11 7.58 -74.06 -0.56 3.55 16 37 H 0.42 1.47 7.33 -92.70 -0.68 0.79 16 38 H 0.41 3.27 8.93 -92.71 -0.83 2.44 16 39 H 0.06 1.51 7.84 -2.38 -0.02 1.49 16 40 H 0.07 2.06 8.12 -2.39 -0.02 2.04 16 Total: -1.00 -79.84 325.21 -3.99 -83.83 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -1.00 Total: 9.64 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: 3.70 Total: -0.95 kcal Atomic # 7 Polarization: -82.40 SS G_CDS: -5.32 Total: -87.72 kcal Atomic # 8 Polarization: -48.57 SS G_CDS: -3.39 Total: -51.97 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -79.84 -3.99 -83.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385338468.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.196 kcal (2) G-P(sol) polarization free energy of solvation -79.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds