Wall clock time and date at job start Mon Mar 30 2020 05:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34636 * 117.00260 * 2 1 4 4 O 1.21511 * 119.99734 * 359.97438 * 3 2 1 5 5 N 1.34779 * 120.00080 * 180.02562 * 3 2 1 6 6 C 1.46504 * 119.99668 * 179.97438 * 5 3 2 7 7 H 1.09000 * 110.35440 * 327.14021 * 6 5 3 8 8 C 1.54597 * 110.30913 * 89.28685 * 6 5 3 9 9 C 1.54930 * 102.92253 * 140.87137 * 8 6 5 10 10 N 1.48534 * 103.22716 * 322.58044 * 9 8 6 11 11 C 1.46904 * 110.99729 * 159.72227 * 10 9 8 12 12 C 1.52996 * 109.47219 * 52.60759 * 11 10 9 13 13 O 1.42901 * 109.47091 * 64.99734 * 12 11 10 14 14 C 1.42905 * 113.99785 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.46972 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99819 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00046 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00192 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47261 * 60.00310 * 19 17 15 22 22 H 1.48500 * 109.47454 * 300.00304 * 19 17 15 23 23 C 1.47906 * 105.81738 * 39.21282 * 10 9 8 24 24 H 1.08996 * 109.47018 * 60.00543 * 1 2 3 25 25 H 1.09003 * 109.47244 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47212 * 300.00069 * 1 2 3 27 27 H 0.96995 * 120.00241 * 359.97438 * 5 3 2 28 28 H 1.09004 * 110.72098 * 259.23360 * 8 6 5 29 29 H 1.09003 * 110.72331 * 22.32743 * 8 6 5 30 30 H 1.09001 * 110.66428 * 204.15068 * 9 8 6 31 31 H 1.08998 * 110.66715 * 81.02169 * 9 8 6 32 32 H 1.09002 * 109.46932 * 292.60422 * 11 10 9 33 33 H 1.08994 * 109.46819 * 172.61047 * 11 10 9 34 34 H 1.09003 * 109.47090 * 304.99634 * 12 11 10 35 35 H 1.09002 * 109.47184 * 185.00003 * 12 11 10 36 36 H 1.09001 * 109.47112 * 60.00541 * 14 13 12 37 37 H 1.08993 * 109.47057 * 299.99974 * 14 13 12 38 38 H 0.97001 * 119.99934 * 359.97438 * 18 17 15 39 39 H 1.08997 * 109.91769 * 94.01943 * 23 10 9 40 40 H 1.08997 * 109.91359 * 215.11756 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.0742 2.5755 -0.0011 7 1 3.4813 3.3028 -0.5555 8 6 4.3023 3.0621 1.4485 9 6 5.7055 3.7151 1.3780 10 7 6.4473 2.8269 0.4468 11 6 7.6138 3.5161 -0.1209 12 6 8.4619 4.0999 1.0107 13 8 8.9984 3.0371 1.8010 14 6 9.8113 3.4765 2.8911 15 6 10.3206 2.2797 3.6522 16 1 10.0507 1.2832 3.3350 17 6 11.1318 2.4569 4.7529 18 7 11.4608 3.6703 5.1389 19 14 11.7636 0.9734 5.6960 20 1 12.6083 1.4299 6.8289 21 1 12.5707 0.1176 4.7896 22 1 10.6137 0.1932 6.2197 23 6 5.4829 2.4573 -0.6119 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 3.9374 0.4566 -0.0005 28 1 3.5486 3.7969 1.7317 29 1 4.2993 2.2216 2.1425 30 1 6.1767 3.7213 2.3609 31 1 5.6397 4.7258 0.9753 32 1 7.2777 4.3204 -0.7753 33 1 8.2112 2.8071 -0.6941 34 1 7.8409 4.7406 1.6368 35 1 9.2780 4.6860 0.5880 36 1 9.2186 4.1044 3.5563 37 1 10.6553 4.0493 2.5070 38 1 11.1330 4.4406 4.6489 39 1 5.5797 3.1391 -1.4568 40 1 5.6645 1.4334 -0.9385 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385341383.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:30 Heat of formation + Delta-G solvation = -121.644543 kcal Electronic energy + Delta-G solvation = -20952.408089 eV Core-core repulsion = 17574.547543 eV Total energy + Delta-G solvation = -3377.860545 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.74749 -39.24440 -37.07696 -36.42605 -34.75253 -33.00202 -31.54753 -29.13988 -28.24872 -27.09450 -26.03984 -22.88609 -22.47857 -22.16895 -20.83861 -20.42598 -19.00481 -17.29805 -16.97413 -16.69352 -16.26681 -15.76415 -15.57768 -14.89091 -14.40597 -14.18653 -13.95110 -13.74649 -13.71554 -13.34362 -12.71620 -12.47350 -12.35259 -12.18654 -11.96943 -11.67986 -11.48778 -11.26688 -11.05561 -10.99483 -10.95071 -10.77152 -10.66725 -10.17079 -10.06470 -9.42051 -8.82847 -8.61734 -8.33127 -8.21494 -6.44458 -4.12561 1.95301 2.58759 3.44754 3.47592 3.66309 3.90649 4.04660 4.33795 4.44948 4.59358 4.78533 4.85573 4.91987 4.93549 5.13727 5.16915 5.21288 5.33358 5.34100 5.45369 5.54068 5.56166 5.73008 5.83624 5.91067 5.94911 6.04580 6.10148 6.20607 6.23669 6.76467 6.88036 7.04212 7.14383 7.17798 7.92465 8.09500 8.20833 8.67300 8.83612 9.57947 10.95789 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.023857 B = 0.003254 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.399590 B = 8602.424932 C = 9330.053905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.373 6.373 3 C 0.647 3.353 4 O -0.575 6.575 5 N -0.697 5.697 6 C 0.153 3.847 7 H 0.098 0.902 8 C -0.135 4.135 9 C 0.036 3.964 10 N -0.499 5.499 11 C 0.052 3.948 12 C 0.059 3.941 13 O -0.371 6.371 14 C 0.185 3.815 15 C -0.593 4.593 16 H 0.061 0.939 17 C 0.016 3.984 18 N -0.913 5.913 19 Si 1.079 2.921 20 H -0.282 1.282 21 H -0.286 1.286 22 H -0.286 1.286 23 C 0.028 3.972 24 H 0.062 0.938 25 H 0.102 0.898 26 H 0.063 0.937 27 H 0.411 0.589 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.045 0.955 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.038 0.962 35 H 0.040 0.960 36 H -0.007 1.007 37 H -0.008 1.008 38 H 0.266 0.734 39 H 0.056 0.944 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.579 -3.282 -12.826 22.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.287 6.287 3 C 0.399 3.601 4 O -0.464 6.464 5 N -0.357 5.357 6 C 0.049 3.951 7 H 0.116 0.884 8 C -0.174 4.174 9 C -0.092 4.092 10 N -0.223 5.223 11 C -0.076 4.076 12 C -0.019 4.019 13 O -0.290 6.290 14 C 0.111 3.889 15 C -0.631 4.631 16 H 0.079 0.921 17 C -0.187 4.187 18 N -0.549 5.549 19 Si 0.906 3.094 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.212 1.212 23 C -0.101 4.101 24 H 0.081 0.919 25 H 0.120 0.880 26 H 0.082 0.918 27 H 0.247 0.753 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.103 0.897 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.011 0.989 37 H 0.010 0.990 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.867 -3.920 -11.312 21.507 hybrid contribution -1.072 1.292 -1.745 2.422 sum -18.939 -2.628 -13.058 23.153 Atomic orbital electron populations 1.23184 0.74406 1.03454 1.02705 1.86252 1.24218 1.31146 1.87072 1.18180 0.83574 0.82150 0.76176 1.90993 1.64683 1.34899 1.55867 1.44831 1.02842 1.10431 1.77546 1.21877 0.92577 0.83104 0.97523 0.88367 1.22975 0.96771 1.01509 0.96167 1.23260 0.92753 0.94181 0.99029 1.64832 1.05224 1.38939 1.13350 1.22349 0.92062 0.97153 0.95989 1.22357 0.95631 0.91145 0.92753 1.87993 1.67652 1.29990 1.43375 1.20270 0.88181 0.96650 0.83842 1.21898 1.33473 0.93519 1.14210 0.92086 1.25935 0.94429 1.02635 0.95725 1.70805 1.44187 0.98365 1.41534 0.83406 0.76380 0.73671 0.75944 1.20698 1.21219 1.21193 1.23177 0.90029 1.02695 0.94192 0.91917 0.87976 0.91825 0.75321 0.90401 0.89826 0.88804 0.93694 0.93886 0.89696 0.94373 0.94143 0.98946 0.98990 0.92382 0.92546 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.42 10.56 101.05 1.07 1.49 16 2 O -0.37 -3.90 10.61 -40.31 -0.43 -4.33 16 3 C 0.65 7.85 8.75 54.06 0.47 8.32 16 4 O -0.58 -8.55 15.78 -19.28 -0.30 -8.85 16 5 N -0.70 -7.30 5.06 -57.40 -0.29 -7.59 16 6 C 0.15 1.66 3.34 -66.57 -0.22 1.44 16 7 H 0.10 1.09 7.56 -51.93 -0.39 0.70 16 8 C -0.14 -1.62 6.78 -24.87 -0.17 -1.79 16 9 C 0.04 0.48 5.08 -1.90 -0.01 0.47 16 10 N -0.50 -7.09 5.34 -230.46 -1.23 -8.32 16 11 C 0.05 0.75 5.41 -3.82 -0.02 0.73 16 12 C 0.06 1.07 5.76 37.16 0.21 1.28 16 13 O -0.37 -8.99 10.27 -35.23 -0.36 -9.35 16 14 C 0.19 5.08 5.00 36.00 0.18 5.26 16 15 C -0.59 -17.82 9.43 -34.44 -0.32 -18.15 16 16 H 0.06 1.85 7.81 -52.48 -0.41 1.44 16 17 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 18 N -0.91 -28.20 13.65 55.43 0.76 -27.45 16 19 Si 1.08 25.70 29.90 -169.99 -5.08 20.61 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 23 C 0.03 0.30 6.46 -2.75 -0.02 0.28 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.41 3.65 8.47 -40.82 -0.35 3.30 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 1.08 8.06 -51.93 -0.42 0.67 16 30 H 0.09 1.50 7.56 -51.93 -0.39 1.10 16 31 H 0.04 0.54 8.01 -51.93 -0.42 0.13 16 32 H 0.04 0.50 7.81 -51.93 -0.41 0.10 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.04 0.67 6.52 -51.93 -0.34 0.33 16 35 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 36 H -0.01 -0.20 8.01 -51.93 -0.42 -0.61 16 37 H -0.01 -0.21 8.01 -51.93 -0.42 -0.63 16 38 H 0.27 8.16 7.22 -40.82 -0.29 7.87 16 39 H 0.06 0.53 7.57 -51.93 -0.39 0.14 16 40 H 0.09 0.88 7.66 -51.93 -0.40 0.48 16 LS Contribution 333.10 15.07 5.02 5.02 Total: -1.00 -35.08 333.10 -7.22 -42.30 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -6.37 Total: -1.74 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 1.07 Total: -0.30 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: -0.77 Total: -43.36 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -1.09 Total: -22.53 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.08 Total: 20.61 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.08 -7.22 -42.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385341383.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.349 kcal (2) G-P(sol) polarization free energy of solvation -35.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds