Wall clock time and date at job start Mon Mar 30 2020 05:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34636 * 117.00260 * 2 1 4 4 O 1.21511 * 119.99734 * 359.97438 * 3 2 1 5 5 N 1.34779 * 120.00080 * 180.02562 * 3 2 1 6 6 C 1.46504 * 119.99668 * 179.97438 * 5 3 2 7 7 H 1.09000 * 110.35440 * 327.14021 * 6 5 3 8 8 C 1.54597 * 110.30913 * 89.28685 * 6 5 3 9 9 C 1.54930 * 102.92253 * 140.87137 * 8 6 5 10 10 N 1.48534 * 103.22716 * 322.58044 * 9 8 6 11 11 C 1.46904 * 110.99729 * 159.72227 * 10 9 8 12 12 C 1.52996 * 109.47219 * 52.60759 * 11 10 9 13 13 O 1.42901 * 109.47091 * 64.99734 * 12 11 10 14 14 C 1.42905 * 113.99785 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.46972 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99819 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00046 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00192 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47261 * 60.00310 * 19 17 15 22 22 H 1.48500 * 109.47454 * 300.00304 * 19 17 15 23 23 C 1.47906 * 105.81738 * 39.21282 * 10 9 8 24 24 H 1.08996 * 109.47018 * 60.00543 * 1 2 3 25 25 H 1.09003 * 109.47244 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47212 * 300.00069 * 1 2 3 27 27 H 0.96995 * 120.00241 * 359.97438 * 5 3 2 28 28 H 1.09004 * 110.72098 * 259.23360 * 8 6 5 29 29 H 1.09003 * 110.72331 * 22.32743 * 8 6 5 30 30 H 1.09001 * 110.66428 * 204.15068 * 9 8 6 31 31 H 1.08998 * 110.66715 * 81.02169 * 9 8 6 32 32 H 1.09002 * 109.46932 * 292.60422 * 11 10 9 33 33 H 1.08994 * 109.46819 * 172.61047 * 11 10 9 34 34 H 1.09003 * 109.47090 * 304.99634 * 12 11 10 35 35 H 1.09002 * 109.47184 * 185.00003 * 12 11 10 36 36 H 1.09001 * 109.47112 * 60.00541 * 14 13 12 37 37 H 1.08993 * 109.47057 * 299.99974 * 14 13 12 38 38 H 0.97001 * 119.99934 * 359.97438 * 18 17 15 39 39 H 1.08997 * 109.91769 * 94.01943 * 23 10 9 40 40 H 1.08997 * 109.91359 * 215.11756 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.0742 2.5755 -0.0011 7 1 3.4813 3.3028 -0.5555 8 6 4.3023 3.0621 1.4485 9 6 5.7055 3.7151 1.3780 10 7 6.4473 2.8269 0.4468 11 6 7.6138 3.5161 -0.1209 12 6 8.4619 4.0999 1.0107 13 8 8.9984 3.0371 1.8010 14 6 9.8113 3.4765 2.8911 15 6 10.3206 2.2797 3.6522 16 1 10.0507 1.2832 3.3350 17 6 11.1318 2.4569 4.7529 18 7 11.4608 3.6703 5.1389 19 14 11.7636 0.9734 5.6960 20 1 12.6083 1.4299 6.8289 21 1 12.5707 0.1176 4.7896 22 1 10.6137 0.1932 6.2197 23 6 5.4829 2.4573 -0.6119 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 3.9374 0.4566 -0.0005 28 1 3.5486 3.7969 1.7317 29 1 4.2993 2.2216 2.1425 30 1 6.1767 3.7213 2.3609 31 1 5.6397 4.7258 0.9753 32 1 7.2777 4.3204 -0.7753 33 1 8.2112 2.8071 -0.6941 34 1 7.8409 4.7406 1.6368 35 1 9.2780 4.6860 0.5880 36 1 9.2186 4.1044 3.5563 37 1 10.6553 4.0493 2.5070 38 1 11.1330 4.4406 4.6489 39 1 5.5797 3.1391 -1.4568 40 1 5.6645 1.4334 -0.9385 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385341383.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:29 Heat of formation + Delta-G solvation = -149.588348 kcal Electronic energy + Delta-G solvation = -20953.619823 eV Core-core repulsion = 17574.547543 eV Total energy + Delta-G solvation = -3379.072280 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.64721 -40.27130 -38.61692 -37.52682 -35.86842 -35.12520 -32.72417 -30.22346 -29.39507 -28.36178 -27.56593 -24.72712 -24.07111 -23.05038 -21.75975 -21.57897 -19.86833 -19.18053 -18.19030 -17.66060 -17.47330 -17.27412 -16.66239 -16.25488 -15.71018 -15.61058 -15.16322 -15.00319 -14.94939 -14.56255 -14.13681 -13.91405 -13.64998 -13.24485 -12.98336 -12.95933 -12.85308 -12.70751 -12.49915 -12.30085 -11.99622 -11.91286 -11.81463 -11.76922 -11.74451 -10.84174 -10.82991 -10.34749 -10.29255 -9.34784 -8.82547 -6.53032 1.15744 1.53383 1.62410 1.65980 1.83535 2.50506 2.88561 3.04281 3.10765 3.24297 3.44314 3.65528 4.00205 4.11325 4.16757 4.21641 4.28692 4.33899 4.36217 4.42296 4.49899 4.55607 4.61602 4.65145 4.73286 4.81269 4.85465 4.92158 4.96644 5.04784 5.24256 5.38583 5.69716 5.86363 5.92303 6.02248 6.31817 6.35072 6.71134 7.22110 7.27794 8.58639 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.023857 B = 0.003254 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.399590 B = 8602.424932 C = 9330.053905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.376 6.376 3 C 0.645 3.355 4 O -0.606 6.606 5 N -0.689 5.689 6 C 0.161 3.839 7 H 0.101 0.899 8 C -0.130 4.130 9 C 0.039 3.961 10 N -0.527 5.527 11 C 0.061 3.939 12 C 0.049 3.951 13 O -0.388 6.388 14 C 0.197 3.803 15 C -0.620 4.620 16 H 0.053 0.947 17 C -0.030 4.030 18 N -0.930 5.930 19 Si 1.128 2.872 20 H -0.276 1.276 21 H -0.266 1.266 22 H -0.268 1.268 23 C 0.035 3.965 24 H 0.063 0.937 25 H 0.135 0.865 26 H 0.059 0.941 27 H 0.419 0.581 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.041 0.959 35 H 0.049 0.951 36 H -0.022 1.022 37 H -0.020 1.020 38 H 0.255 0.745 39 H 0.079 0.921 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.218 -4.412 -13.876 24.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.290 6.290 3 C 0.398 3.602 4 O -0.498 6.498 5 N -0.349 5.349 6 C 0.056 3.944 7 H 0.119 0.881 8 C -0.169 4.169 9 C -0.089 4.089 10 N -0.252 5.252 11 C -0.067 4.067 12 C -0.029 4.029 13 O -0.307 6.307 14 C 0.121 3.879 15 C -0.658 4.658 16 H 0.071 0.929 17 C -0.227 4.227 18 N -0.566 5.566 19 Si 0.946 3.054 20 H -0.201 1.201 21 H -0.191 1.191 22 H -0.193 1.193 23 C -0.093 4.093 24 H 0.082 0.918 25 H 0.153 0.847 26 H 0.078 0.922 27 H 0.256 0.744 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.060 0.940 35 H 0.067 0.933 36 H -0.004 1.004 37 H -0.002 1.002 38 H 0.064 0.936 39 H 0.097 0.903 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -18.525 -5.057 -12.400 22.858 hybrid contribution -0.960 1.680 -1.481 2.437 sum -19.485 -3.376 -13.880 24.160 Atomic orbital electron populations 1.23496 0.72748 1.05618 1.02586 1.86265 1.25870 1.30119 1.86705 1.18336 0.83857 0.82228 0.75777 1.90970 1.65416 1.35994 1.57386 1.44790 1.02517 1.10753 1.76826 1.21786 0.92820 0.83301 0.96473 0.88073 1.22895 0.96062 1.01061 0.96897 1.23143 0.93026 0.95265 0.97504 1.64763 1.06171 1.39373 1.14911 1.22293 0.91647 0.98261 0.94512 1.22736 0.96421 0.90420 0.93280 1.87938 1.67319 1.32557 1.42918 1.19915 0.87953 0.95414 0.84571 1.22259 1.34317 0.93917 1.15289 0.92905 1.27605 0.93975 1.04665 0.96492 1.70930 1.45008 0.98823 1.41867 0.82828 0.76772 0.70615 0.75147 1.20146 1.19104 1.19298 1.23186 0.88711 1.03761 0.93684 0.91801 0.84701 0.92241 0.74353 0.89950 0.91229 0.92211 0.92009 0.90190 0.89755 0.94038 0.93276 1.00436 1.00207 0.93582 0.90289 0.88488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.65 10.56 113.37 1.20 1.84 16 2 O -0.38 -7.35 10.61 -55.45 -0.59 -7.94 16 3 C 0.64 14.94 8.75 129.79 1.14 16.07 16 4 O -0.61 -17.53 15.78 19.81 0.31 -17.21 16 5 N -0.69 -13.42 5.06 -565.91 -2.86 -16.28 16 6 C 0.16 3.19 3.34 45.87 0.15 3.35 16 7 H 0.10 2.03 7.56 -2.39 -0.02 2.01 16 8 C -0.13 -3.03 6.78 31.80 0.22 -2.82 16 9 C 0.04 1.02 5.08 86.65 0.44 1.46 16 10 N -0.53 -14.21 5.34 -883.03 -4.72 -18.93 16 11 C 0.06 1.62 5.41 86.30 0.47 2.09 16 12 C 0.05 1.74 5.76 71.98 0.41 2.15 16 13 O -0.39 -19.06 10.27 -148.98 -1.53 -20.59 16 14 C 0.20 11.11 5.00 71.24 0.36 11.47 16 15 C -0.62 -37.87 9.43 25.60 0.24 -37.63 16 16 H 0.05 3.24 7.81 -2.91 -0.02 3.21 16 17 C -0.03 -1.79 5.46 84.65 0.46 -1.33 16 18 N -0.93 -58.07 13.65 21.45 0.29 -57.78 16 19 Si 1.13 50.91 29.90 68.60 2.05 52.96 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 22 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 23 C 0.03 0.65 6.46 86.45 0.56 1.21 16 24 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.42 6.77 8.47 -92.71 -0.79 5.98 16 28 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.07 1.81 8.06 -2.39 -0.02 1.79 16 30 H 0.06 1.97 7.56 -2.39 -0.02 1.95 16 31 H 0.06 1.40 8.01 -2.39 -0.02 1.38 16 32 H 0.08 1.58 7.81 -2.39 -0.02 1.56 16 33 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.04 1.45 6.52 -2.39 -0.02 1.44 16 35 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 36 H -0.02 -1.28 8.01 -2.39 -0.02 -1.30 16 37 H -0.02 -1.13 8.01 -2.39 -0.02 -1.15 16 38 H 0.26 16.06 7.22 -92.71 -0.67 15.39 16 39 H 0.08 1.19 7.57 -2.39 -0.02 1.17 16 40 H 0.10 1.68 7.66 -2.39 -0.02 1.66 16 Total: -1.00 -76.05 333.10 -1.06 -77.11 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 0.34 Total: 10.78 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: 5.64 Total: -2.13 kcal Atomic # 7 Polarization: -85.69 SS G_CDS: -7.29 Total: -92.99 kcal Atomic # 8 Polarization: -43.93 SS G_CDS: -1.81 Total: -45.74 kcal Atomic # 14 Polarization: 50.91 SS G_CDS: 2.05 Total: 52.96 kcal Total: -76.05 -1.06 -77.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385341383.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.477 kcal (2) G-P(sol) polarization free energy of solvation -76.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds