Wall clock time and date at job start Mon Mar 30 2020 05:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34639 * 116.99892 * 2 1 4 4 O 1.21513 * 119.99857 * 0.02562 * 3 2 1 5 5 N 1.34773 * 120.00041 * 180.02562 * 3 2 1 6 6 C 1.46498 * 120.00182 * 180.02562 * 5 3 2 7 7 H 1.09004 * 110.27361 * 32.90975 * 6 5 3 8 8 C 1.54594 * 110.30739 * 270.71532 * 6 5 3 9 9 C 1.54942 * 102.92004 * 219.12427 * 8 6 5 10 10 N 1.48532 * 103.22397 * 37.41701 * 9 8 6 11 11 C 1.46900 * 110.99629 * 200.27771 * 10 9 8 12 12 C 1.53005 * 109.47479 * 307.39563 * 11 10 9 13 13 O 1.42895 * 109.46776 * 64.99983 * 12 11 10 14 14 C 1.42903 * 113.99738 * 180.02562 * 13 12 11 15 15 C 1.50705 * 109.47153 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00041 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00044 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99636 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 119.99929 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47181 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47168 * 120.00622 * 19 17 15 22 22 H 1.48502 * 109.47128 * 240.00193 * 19 17 15 23 23 C 1.47905 * 105.82142 * 320.78973 * 10 9 8 24 24 H 1.09001 * 109.47157 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47122 * 299.99932 * 1 2 3 26 26 H 1.09000 * 109.47070 * 59.99958 * 1 2 3 27 27 H 0.97005 * 119.99923 * 359.97438 * 5 3 2 28 28 H 1.09000 * 110.72419 * 337.47868 * 8 6 5 29 29 H 1.09001 * 110.72583 * 100.76796 * 8 6 5 30 30 H 1.08996 * 110.67017 * 278.97886 * 9 8 6 31 31 H 1.09003 * 110.80561 * 155.91526 * 9 8 6 32 32 H 1.09003 * 109.47231 * 67.39723 * 11 10 9 33 33 H 1.08998 * 109.47462 * 187.39449 * 11 10 9 34 34 H 1.08997 * 109.47326 * 185.00190 * 12 11 10 35 35 H 1.09002 * 109.46531 * 304.99993 * 12 11 10 36 36 H 1.08993 * 109.47336 * 300.00074 * 14 13 12 37 37 H 1.09005 * 109.46761 * 60.00196 * 14 13 12 38 38 H 0.97002 * 119.99423 * 179.97438 * 18 17 15 39 39 H 1.09000 * 109.91402 * 265.98305 * 23 10 9 40 40 H 1.08997 * 109.91514 * 144.68583 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1997 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4092 1.2702 -0.0005 6 6 4.0743 2.5755 0.0000 7 1 3.4811 3.3014 0.5563 8 6 4.3011 3.0627 -1.4495 9 6 5.7045 3.7158 -1.3798 10 7 6.4469 2.8272 -0.4495 11 6 7.6138 3.5162 0.1176 12 6 8.4611 4.1006 -1.0145 13 8 7.7162 5.1142 -1.6924 14 6 8.4204 5.7276 -2.7741 15 6 7.5453 6.7746 -3.4138 16 1 6.5510 6.9539 -3.0322 17 6 8.0144 7.5042 -4.4855 18 7 9.2254 7.2861 -4.9498 19 14 6.9300 8.8023 -5.2779 20 1 5.6235 8.8530 -4.5738 21 1 7.5943 10.1271 -5.1837 22 1 6.7102 8.4593 -6.7060 23 6 5.4833 2.4571 0.6098 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.9375 0.4567 -0.0005 28 1 4.3009 2.2222 -2.1434 29 1 3.5473 3.7977 -1.7318 30 1 5.6390 4.7263 -0.9767 31 1 6.1765 3.7247 -2.3623 32 1 7.2782 4.3203 0.7725 33 1 8.2117 2.8071 0.6900 34 1 9.3714 4.5342 -0.6004 35 1 8.7226 3.3100 -1.7179 36 1 9.3300 6.1949 -2.3969 37 1 8.6806 4.9706 -3.5139 38 1 9.5553 7.7992 -5.7040 39 1 5.5807 3.1386 1.4549 40 1 5.6630 1.4319 0.9334 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385341386.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:33 Heat of formation + Delta-G solvation = -119.307423 kcal Electronic energy + Delta-G solvation = -21216.852911 eV Core-core repulsion = 17839.093711 eV Total energy + Delta-G solvation = -3377.759200 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.64457 -39.08233 -37.02380 -36.27272 -34.56769 -32.76594 -31.45866 -28.82369 -28.25134 -27.15552 -26.44011 -22.66483 -22.15147 -21.97221 -20.67981 -20.45451 -18.91081 -17.18312 -16.61467 -16.39836 -16.13520 -15.80770 -15.35417 -14.72359 -14.38592 -14.08361 -14.06068 -13.77141 -13.53963 -13.21396 -12.57141 -12.37295 -12.28881 -11.88244 -11.75634 -11.57850 -11.26231 -11.08660 -10.97834 -10.81765 -10.75551 -10.73810 -10.60153 -10.42514 -9.95980 -9.28704 -9.09285 -8.82042 -8.22053 -8.17495 -6.12458 -4.14184 2.03587 2.68539 3.28407 3.35357 3.41400 4.06478 4.19670 4.33336 4.52464 4.84400 4.87676 4.91204 4.98930 5.11586 5.23527 5.24470 5.35402 5.49209 5.58531 5.60320 5.68332 5.79939 6.03181 6.11088 6.12144 6.16463 6.23802 6.33880 6.47285 6.69649 7.07372 7.09801 7.22344 7.28487 7.41802 7.77579 8.13358 8.19036 8.53837 8.99137 9.51036 10.99045 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.022072 B = 0.003685 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.258393 B = 7597.331226 C = 8628.677377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.375 6.375 3 C 0.645 3.355 4 O -0.572 6.572 5 N -0.697 5.697 6 C 0.151 3.849 7 H 0.098 0.902 8 C -0.140 4.140 9 C 0.054 3.946 10 N -0.516 5.516 11 C 0.051 3.949 12 C 0.060 3.940 13 O -0.393 6.393 14 C 0.194 3.806 15 C -0.513 4.513 16 H 0.066 0.934 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.906 3.094 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.282 1.282 23 C 0.030 3.970 24 H 0.101 0.899 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.408 0.592 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.042 0.958 33 H 0.080 0.920 34 H 0.042 0.958 35 H 0.047 0.953 36 H 0.003 0.997 37 H 0.005 0.995 38 H 0.263 0.737 39 H 0.057 0.943 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.626 -14.813 11.613 21.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.289 6.289 3 C 0.397 3.603 4 O -0.461 6.461 5 N -0.356 5.356 6 C 0.047 3.953 7 H 0.116 0.884 8 C -0.180 4.180 9 C -0.073 4.073 10 N -0.241 5.241 11 C -0.077 4.077 12 C -0.018 4.018 13 O -0.313 6.313 14 C 0.120 3.880 15 C -0.551 4.551 16 H 0.084 0.916 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.733 3.267 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.208 1.208 23 C -0.099 4.099 24 H 0.119 0.881 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.243 0.757 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.021 0.979 37 H 0.023 0.977 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.878 -14.670 11.267 21.459 hybrid contribution -0.247 1.012 -0.156 1.053 sum -11.124 -13.658 11.111 20.827 Atomic orbital electron populations 1.23175 0.74488 1.03326 1.02769 1.86238 1.24171 1.31304 1.87209 1.18198 0.83639 0.82115 0.76338 1.91012 1.64626 1.34847 1.55588 1.44854 1.02739 1.10414 1.77612 1.21936 0.92504 0.82746 0.98070 0.88435 1.23083 0.98423 1.01196 0.95267 1.23308 0.90569 0.94474 0.98973 1.64919 1.06029 1.39599 1.13539 1.22353 0.92817 0.96324 0.96215 1.22256 0.93832 0.91690 0.94012 1.87937 1.42055 1.52235 1.49099 1.20182 0.92459 0.92003 0.83335 1.21075 1.01383 1.18458 1.14175 0.91551 1.24948 0.95346 0.97551 0.96672 1.69976 1.16536 1.41398 1.25818 0.86313 0.80494 0.80869 0.79033 1.19463 1.20901 1.20839 1.23117 0.90345 1.01976 0.94484 0.88078 0.91920 0.91812 0.75686 0.90586 0.90424 0.91830 0.88010 0.93969 0.90149 0.93960 0.93515 0.97902 0.97682 0.92724 0.92520 0.89979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.44 10.56 101.05 1.07 1.51 16 2 O -0.38 -4.05 10.62 -40.32 -0.43 -4.47 16 3 C 0.64 8.29 8.75 54.05 0.47 8.76 16 4 O -0.57 -9.20 15.78 -19.28 -0.30 -9.51 16 5 N -0.70 -7.63 5.06 -57.40 -0.29 -7.92 16 6 C 0.15 1.84 3.34 -66.58 -0.22 1.62 16 7 H 0.10 1.28 7.56 -51.93 -0.39 0.89 16 8 C -0.14 -1.98 6.78 -24.87 -0.17 -2.15 16 9 C 0.05 0.88 4.69 -1.90 -0.01 0.87 16 10 N -0.52 -7.31 5.40 -230.45 -1.24 -8.55 16 11 C 0.05 0.73 5.60 -3.82 -0.02 0.71 16 12 C 0.06 1.06 5.99 37.16 0.22 1.28 16 13 O -0.39 -8.81 6.60 -35.23 -0.23 -9.04 16 14 C 0.19 5.16 5.69 36.01 0.20 5.36 16 15 C -0.51 -14.70 9.43 -34.44 -0.32 -15.02 16 16 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 19 Si 0.91 21.71 29.54 -169.99 -5.02 16.69 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.03 0.33 6.47 -2.75 -0.02 0.32 16 24 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.41 3.53 8.46 -40.82 -0.35 3.19 16 28 H 0.08 1.06 8.06 -51.93 -0.42 0.64 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.06 1.16 7.19 -51.93 -0.37 0.79 16 31 H 0.10 1.96 7.06 -51.93 -0.37 1.60 16 32 H 0.04 0.61 7.81 -51.93 -0.41 0.20 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 37 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.06 0.61 7.57 -51.93 -0.39 0.22 16 40 H 0.08 0.77 7.65 -51.93 -0.40 0.38 16 LS Contribution 331.10 15.07 4.99 4.99 Total: -1.00 -32.47 331.10 -7.13 -39.60 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -6.44 Total: -0.62 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 1.11 Total: 4.76 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: -0.80 Total: -42.41 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.97 Total: -23.02 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.47 -7.13 -39.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385341386.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.709 kcal (2) G-P(sol) polarization free energy of solvation -32.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds