Wall clock time and date at job start Mon Mar 30 2020 05:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34639 * 116.99892 * 2 1 4 4 O 1.21513 * 119.99857 * 0.02562 * 3 2 1 5 5 N 1.34773 * 120.00041 * 180.02562 * 3 2 1 6 6 C 1.46498 * 120.00182 * 180.02562 * 5 3 2 7 7 H 1.09004 * 110.27361 * 32.90975 * 6 5 3 8 8 C 1.54594 * 110.30739 * 270.71532 * 6 5 3 9 9 C 1.54942 * 102.92004 * 219.12427 * 8 6 5 10 10 N 1.48532 * 103.22397 * 37.41701 * 9 8 6 11 11 C 1.46900 * 110.99629 * 200.27771 * 10 9 8 12 12 C 1.53005 * 109.47479 * 307.39563 * 11 10 9 13 13 O 1.42895 * 109.46776 * 64.99983 * 12 11 10 14 14 C 1.42903 * 113.99738 * 180.02562 * 13 12 11 15 15 C 1.50705 * 109.47153 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00041 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00044 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99636 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 119.99929 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47181 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47168 * 120.00622 * 19 17 15 22 22 H 1.48502 * 109.47128 * 240.00193 * 19 17 15 23 23 C 1.47905 * 105.82142 * 320.78973 * 10 9 8 24 24 H 1.09001 * 109.47157 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47122 * 299.99932 * 1 2 3 26 26 H 1.09000 * 109.47070 * 59.99958 * 1 2 3 27 27 H 0.97005 * 119.99923 * 359.97438 * 5 3 2 28 28 H 1.09000 * 110.72419 * 337.47868 * 8 6 5 29 29 H 1.09001 * 110.72583 * 100.76796 * 8 6 5 30 30 H 1.08996 * 110.67017 * 278.97886 * 9 8 6 31 31 H 1.09003 * 110.80561 * 155.91526 * 9 8 6 32 32 H 1.09003 * 109.47231 * 67.39723 * 11 10 9 33 33 H 1.08998 * 109.47462 * 187.39449 * 11 10 9 34 34 H 1.08997 * 109.47326 * 185.00190 * 12 11 10 35 35 H 1.09002 * 109.46531 * 304.99993 * 12 11 10 36 36 H 1.08993 * 109.47336 * 300.00074 * 14 13 12 37 37 H 1.09005 * 109.46761 * 60.00196 * 14 13 12 38 38 H 0.97002 * 119.99423 * 179.97438 * 18 17 15 39 39 H 1.09000 * 109.91402 * 265.98305 * 23 10 9 40 40 H 1.08997 * 109.91514 * 144.68583 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1997 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4092 1.2702 -0.0005 6 6 4.0743 2.5755 0.0000 7 1 3.4811 3.3014 0.5563 8 6 4.3011 3.0627 -1.4495 9 6 5.7045 3.7158 -1.3798 10 7 6.4469 2.8272 -0.4495 11 6 7.6138 3.5162 0.1176 12 6 8.4611 4.1006 -1.0145 13 8 7.7162 5.1142 -1.6924 14 6 8.4204 5.7276 -2.7741 15 6 7.5453 6.7746 -3.4138 16 1 6.5510 6.9539 -3.0322 17 6 8.0144 7.5042 -4.4855 18 7 9.2254 7.2861 -4.9498 19 14 6.9300 8.8023 -5.2779 20 1 5.6235 8.8530 -4.5738 21 1 7.5943 10.1271 -5.1837 22 1 6.7102 8.4593 -6.7060 23 6 5.4833 2.4571 0.6098 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.9375 0.4567 -0.0005 28 1 4.3009 2.2222 -2.1434 29 1 3.5473 3.7977 -1.7318 30 1 5.6390 4.7263 -0.9767 31 1 6.1765 3.7247 -2.3623 32 1 7.2782 4.3203 0.7725 33 1 8.2117 2.8071 0.6900 34 1 9.3714 4.5342 -0.6004 35 1 8.7226 3.3100 -1.7179 36 1 9.3300 6.1949 -2.3969 37 1 8.6806 4.9706 -3.5139 38 1 9.5553 7.7992 -5.7040 39 1 5.5807 3.1386 1.4549 40 1 5.6630 1.4319 0.9334 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385341386.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:32 Heat of formation + Delta-G solvation = -144.632105 kcal Electronic energy + Delta-G solvation = -21217.951072 eV Core-core repulsion = 17839.093711 eV Total energy + Delta-G solvation = -3378.857361 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.61722 -40.22989 -38.47775 -37.43649 -35.74210 -34.85753 -32.72342 -30.14536 -29.47642 -28.57543 -27.67546 -24.59889 -23.57973 -23.01814 -21.73998 -21.68547 -19.83721 -18.58779 -18.15432 -17.54611 -17.47732 -17.36987 -16.60345 -16.29222 -15.91081 -15.42827 -15.02236 -14.96454 -14.90027 -14.50365 -13.97779 -13.76830 -13.36515 -13.08502 -13.03318 -12.94679 -12.88477 -12.62192 -12.55417 -12.29483 -12.15719 -11.93422 -11.79422 -11.70587 -11.63871 -11.19931 -10.85480 -10.31521 -10.12323 -9.38326 -8.31946 -6.43142 1.16999 1.39455 1.40031 1.54676 1.69047 2.34070 3.00961 3.02437 3.21033 3.28333 3.52978 3.72180 4.10102 4.17036 4.35707 4.37042 4.37566 4.39497 4.46383 4.58909 4.64086 4.71489 4.74813 4.81687 4.87139 4.93895 4.97478 5.14007 5.21378 5.26664 5.29826 5.42764 5.56103 5.88646 5.97838 6.06677 6.36570 6.54802 6.83846 7.26634 7.28750 8.80568 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.022072 B = 0.003685 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.258393 B = 7597.331226 C = 8628.677377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.373 6.373 3 C 0.643 3.357 4 O -0.609 6.609 5 N -0.684 5.684 6 C 0.160 3.840 7 H 0.089 0.911 8 C -0.134 4.134 9 C 0.061 3.939 10 N -0.519 5.519 11 C 0.059 3.941 12 C 0.050 3.950 13 O -0.398 6.398 14 C 0.211 3.789 15 C -0.540 4.540 16 H 0.061 0.939 17 C 0.006 3.994 18 N -0.931 5.931 19 Si 0.978 3.022 20 H -0.265 1.265 21 H -0.272 1.272 22 H -0.273 1.273 23 C 0.036 3.964 24 H 0.137 0.863 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.421 0.579 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.039 0.961 31 H 0.065 0.935 32 H 0.043 0.957 33 H 0.118 0.882 34 H 0.050 0.950 35 H 0.043 0.957 36 H -0.017 1.017 37 H -0.017 1.017 38 H 0.270 0.730 39 H 0.070 0.930 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.503 -15.892 12.695 23.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.287 6.287 3 C 0.396 3.604 4 O -0.501 6.501 5 N -0.344 5.344 6 C 0.055 3.945 7 H 0.107 0.893 8 C -0.174 4.174 9 C -0.067 4.067 10 N -0.244 5.244 11 C -0.069 4.069 12 C -0.027 4.027 13 O -0.318 6.318 14 C 0.136 3.864 15 C -0.578 4.578 16 H 0.079 0.921 17 C -0.193 4.193 18 N -0.571 5.571 19 Si 0.802 3.198 20 H -0.189 1.189 21 H -0.198 1.198 22 H -0.198 1.198 23 C -0.092 4.092 24 H 0.155 0.845 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.260 0.740 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.136 0.864 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.001 0.999 37 H 0.001 0.999 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.743 -15.803 12.373 23.254 hybrid contribution 0.030 1.242 -0.453 1.323 sum -11.714 -14.561 11.920 22.165 Atomic orbital electron populations 1.23498 0.72854 1.05642 1.02484 1.86255 1.25750 1.29888 1.86758 1.18382 0.83976 0.82214 0.75828 1.90991 1.65534 1.36243 1.57312 1.44697 1.02342 1.10537 1.76802 1.21734 0.93223 0.83190 0.96320 0.89279 1.22971 0.96610 1.00794 0.96999 1.22988 0.91969 0.94011 0.97699 1.64919 1.06510 1.38460 1.14492 1.22386 0.92752 0.97165 0.94622 1.22583 0.94869 0.90523 0.94774 1.87937 1.42373 1.53354 1.48115 1.19747 0.91635 0.91148 0.83910 1.21387 1.01558 1.19631 1.15190 0.92059 1.25915 0.96765 0.99644 0.96929 1.70078 1.18182 1.42468 1.26335 0.85200 0.78579 0.77926 0.78117 1.18911 1.19778 1.19813 1.23179 0.88512 1.03941 0.93582 0.84455 0.91970 0.92425 0.74034 0.90375 0.91651 0.94265 0.91638 0.93835 0.86355 0.93150 0.93911 0.99947 0.99932 0.92154 0.91226 0.86955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.68 10.56 113.37 1.20 1.87 16 2 O -0.37 -7.35 10.62 -55.49 -0.59 -7.94 16 3 C 0.64 15.69 8.75 129.79 1.14 16.83 16 4 O -0.61 -19.34 15.78 19.80 0.31 -19.03 16 5 N -0.68 -13.62 5.06 -565.94 -2.86 -16.48 16 6 C 0.16 3.66 3.34 45.87 0.15 3.82 16 7 H 0.09 2.27 7.56 -2.38 -0.02 2.25 16 8 C -0.13 -3.81 6.78 31.80 0.22 -3.59 16 9 C 0.06 2.05 4.69 86.65 0.41 2.46 16 10 N -0.52 -13.92 5.40 -883.00 -4.76 -18.68 16 11 C 0.06 1.56 5.60 86.30 0.48 2.04 16 12 C 0.05 1.76 5.99 71.98 0.43 2.19 16 13 O -0.40 -18.43 6.60 -148.98 -0.98 -19.42 16 14 C 0.21 11.66 5.69 71.24 0.41 12.06 16 15 C -0.54 -31.84 9.43 25.60 0.24 -31.59 16 16 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 17 C 0.01 0.34 5.46 84.65 0.46 0.80 16 18 N -0.93 -56.11 13.29 21.45 0.28 -55.83 16 19 Si 0.98 44.71 29.54 68.60 2.03 46.73 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 23 C 0.04 0.71 6.47 86.44 0.56 1.27 16 24 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.42 6.09 8.46 -92.70 -0.78 5.30 16 28 H 0.08 2.17 8.06 -2.39 -0.02 2.15 16 29 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.04 1.49 7.19 -2.39 -0.02 1.47 16 31 H 0.07 2.66 7.06 -2.39 -0.02 2.64 16 32 H 0.04 1.17 7.81 -2.39 -0.02 1.15 16 33 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 36 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 37 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16 38 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 39 H 0.07 1.27 7.57 -2.39 -0.02 1.25 16 40 H 0.11 1.62 7.65 -2.39 -0.02 1.60 16 Total: -1.00 -71.80 331.10 -0.65 -72.45 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 0.24 Total: 10.04 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 5.69 Total: 8.15 kcal Atomic # 7 Polarization: -83.65 SS G_CDS: -7.34 Total: -90.99 kcal Atomic # 8 Polarization: -45.12 SS G_CDS: -1.26 Total: -46.38 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -71.80 -0.65 -72.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385341386.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.185 kcal (2) G-P(sol) polarization free energy of solvation -71.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds