Wall clock time and date at job start Mon Mar 30 2020 05:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99878 * 2 1 4 4 H 1.48510 * 109.46582 * 239.99591 * 3 2 1 5 5 H 1.48501 * 109.47132 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47518 * 119.99510 * 3 2 1 7 7 C 1.37882 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99404 * 180.02562 * 7 2 1 9 9 C 1.50690 * 120.00112 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.47497 * 179.97438 * 9 7 2 11 11 C 1.42897 * 114.00368 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.46994 * 180.02562 * 11 10 9 13 13 N 1.46895 * 109.47492 * 65.00246 * 12 11 10 14 14 C 1.46897 * 111.00459 * 179.97438 * 13 12 11 15 15 C 1.53006 * 109.47281 * 179.97438 * 14 13 12 16 16 C 1.53002 * 109.46808 * 179.97438 * 15 14 13 17 17 N 1.46908 * 109.46707 * 179.97438 * 16 15 14 18 18 C 1.47024 * 110.99261 * 46.32476 * 17 16 15 19 19 C 1.53103 * 109.24985 * 182.34870 * 18 17 16 20 20 O 1.43012 * 109.29295 * 303.21723 * 19 18 17 21 21 C 1.43011 * 113.74271 * 58.65008 * 20 19 18 22 22 C 1.47018 * 110.99661 * 170.00016 * 17 16 15 23 23 H 0.97001 * 120.00799 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47801 * 59.99412 * 9 7 2 25 25 H 1.09000 * 109.47362 * 299.99571 * 9 7 2 26 26 H 1.09001 * 109.47096 * 60.00243 * 11 10 9 27 27 H 1.09001 * 109.47253 * 300.00244 * 11 10 9 28 28 H 1.09001 * 109.47569 * 304.99653 * 12 11 10 29 29 H 1.09002 * 109.47099 * 184.99751 * 12 11 10 30 30 H 1.00903 * 111.00142 * 303.95413 * 13 12 11 31 31 H 1.09002 * 109.47244 * 60.00222 * 14 13 12 32 32 H 1.08999 * 109.46948 * 299.99737 * 14 13 12 33 33 H 1.09002 * 109.46638 * 60.00050 * 15 14 13 34 34 H 1.08999 * 109.47077 * 299.99857 * 15 14 13 35 35 H 1.09003 * 109.46906 * 60.00364 * 16 15 14 36 36 H 1.08999 * 109.47302 * 299.99863 * 16 15 14 37 37 H 1.08998 * 109.47369 * 62.43595 * 18 17 16 38 38 H 1.08998 * 109.54483 * 302.29802 * 18 17 16 39 39 H 1.09002 * 109.50635 * 183.25881 * 19 18 17 40 40 H 1.09003 * 109.50698 * 63.17493 * 19 18 17 41 41 H 1.08997 * 109.50806 * 61.26171 * 21 20 19 42 42 H 1.08997 * 109.50924 * 181.35636 * 21 20 19 43 43 H 1.08994 * 109.50209 * 57.67478 * 22 17 16 44 44 H 1.08997 * 109.50514 * 297.54292 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 2.1797 -3.5853 0.0005 11 6 1.5652 -4.8754 0.0011 12 6 2.6482 -5.9561 0.0017 13 7 3.4081 -5.8872 1.2569 14 6 4.4589 -6.9131 1.2933 15 6 5.2274 -6.8095 2.6123 16 6 6.3214 -7.8785 2.6503 17 7 7.0596 -7.7787 3.9165 18 6 6.1380 -7.6535 5.0551 19 6 6.9476 -7.4936 6.3447 20 8 7.8359 -8.6054 6.4858 21 6 8.7479 -8.7559 5.3945 22 6 7.9567 -8.9297 4.0954 23 1 -0.4851 0.8400 -0.0004 24 1 0.6247 -2.5572 -0.8896 25 1 0.6241 -2.5568 0.8903 26 1 0.9448 -4.9827 -0.8886 27 1 0.9453 -4.9822 0.8913 28 1 3.3218 -5.7960 -0.8402 29 1 2.1822 -6.9375 -0.0874 30 1 3.7967 -4.9661 1.3943 31 1 5.1452 -6.7599 0.4604 32 1 4.0051 -7.9009 1.2133 33 1 4.5413 -6.9624 3.4454 34 1 5.6812 -5.8217 2.6918 35 1 7.0075 -7.7260 1.8171 36 1 5.8672 -8.8662 2.5710 37 1 5.5195 -8.5485 5.1222 38 1 5.5013 -6.7800 4.9145 39 1 6.2701 -7.4585 7.1978 40 1 7.5247 -6.5700 6.3000 41 1 9.3774 -7.8691 5.3213 42 1 9.3729 -9.6333 5.5607 43 1 8.6468 -8.9874 3.2537 44 1 7.3678 -9.8454 4.1476 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395343163.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:24 Heat of formation + Delta-G solvation = -95.507544 kcal Electronic energy + Delta-G solvation = -20626.920501 eV Core-core repulsion = 17386.026436 eV Total energy + Delta-G solvation = -3240.894066 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.91091 -37.49532 -36.68175 -35.35331 -32.80659 -32.02750 -31.36307 -28.92831 -27.27578 -26.34110 -24.43597 -23.46176 -22.35841 -21.50118 -21.19969 -20.40025 -16.97667 -16.50058 -16.39122 -16.16090 -15.59960 -15.41662 -15.38842 -15.19589 -14.96678 -14.41543 -14.38142 -13.82323 -13.62974 -13.36534 -12.78916 -12.50678 -12.28588 -12.13457 -11.73138 -11.67853 -11.50809 -11.22121 -11.18468 -10.99394 -10.82683 -10.77708 -10.63127 -10.49532 -10.02050 -9.97017 -9.12259 -8.82548 -8.69496 -8.23644 -8.17310 -6.10909 -4.12915 3.31976 3.34720 3.38433 3.38978 3.58164 4.26053 4.34664 4.56099 4.65630 4.74516 4.81383 4.83885 4.93576 4.99404 5.09573 5.14988 5.24106 5.25382 5.28139 5.33646 5.44271 5.48432 5.51489 5.58216 5.62392 5.68128 5.74634 6.01289 6.03820 6.12048 6.20231 6.34276 6.62764 6.65225 6.81836 7.10956 7.20597 7.43695 7.63218 7.78434 8.15113 8.57393 8.99808 9.51873 11.00548 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.021503 B = 0.002638 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.834005 B =10613.479184 C =11443.636993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.065 0.935 9 C 0.198 3.802 10 O -0.399 6.399 11 C 0.062 3.938 12 C 0.066 3.934 13 N -0.689 5.689 14 C 0.061 3.939 15 C -0.122 4.122 16 C 0.058 3.942 17 N -0.537 5.537 18 C 0.011 3.989 19 C 0.062 3.938 20 O -0.388 6.388 21 C 0.064 3.936 22 C 0.017 3.983 23 H 0.265 0.735 24 H 0.004 0.996 25 H 0.006 0.994 26 H 0.040 0.960 27 H 0.046 0.954 28 H 0.034 0.966 29 H 0.074 0.926 30 H 0.356 0.644 31 H 0.028 0.972 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.035 0.965 37 H 0.042 0.958 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.870 -19.120 8.061 24.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.554 4.554 8 H 0.083 0.917 9 C 0.123 3.877 10 O -0.320 6.320 11 C -0.016 4.016 12 C -0.063 4.063 13 N -0.322 5.322 14 C -0.069 4.069 15 C -0.160 4.160 16 C -0.070 4.070 17 N -0.262 5.262 18 C -0.117 4.117 19 C -0.015 4.015 20 O -0.307 6.307 21 C -0.014 4.014 22 C -0.111 4.111 23 H 0.074 0.926 24 H 0.022 0.978 25 H 0.024 0.976 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.092 0.908 30 H 0.176 0.824 31 H 0.046 0.954 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.114 0.886 43 H 0.103 0.897 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 13.737 -19.039 8.546 24.985 hybrid contribution 0.100 0.633 -0.992 1.181 sum 13.837 -18.406 7.555 24.235 Atomic orbital electron populations 1.69949 1.06108 1.27281 1.50416 1.24952 0.94979 0.99434 0.95140 0.86394 0.79312 0.81925 0.78825 1.20065 1.21150 1.19971 1.21013 0.93961 0.89423 1.51002 0.91678 1.20168 0.88691 0.83433 0.95377 1.87783 1.35804 1.13133 1.95232 1.22294 0.94527 0.85283 0.99521 1.21938 0.95878 0.98003 0.90477 1.60450 1.26977 1.09197 1.35542 1.21858 0.92603 0.96421 0.96033 1.21707 0.96417 0.99518 0.98373 1.22117 0.95511 0.97875 0.91471 1.62270 1.20599 1.40959 1.02410 1.22927 0.95253 1.02483 0.91072 1.22714 0.92321 0.89456 0.96989 1.87976 1.49332 1.49857 1.43512 1.22650 0.91370 1.02104 0.85226 1.22788 0.96891 0.92118 0.99321 0.92584 0.97843 0.97615 0.94149 0.93568 0.94791 0.90804 0.82424 0.95426 0.91610 0.90737 0.90803 0.90482 0.94694 0.93947 0.88436 0.88355 0.92124 0.92210 0.88559 0.89653 0.93998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.01 13.29 55.43 0.74 -26.28 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -15.22 9.43 -34.44 -0.32 -15.55 16 8 H 0.06 1.89 7.81 -52.48 -0.41 1.48 16 9 C 0.20 5.45 5.69 36.00 0.20 5.66 16 10 O -0.40 -9.56 9.85 -35.23 -0.35 -9.91 16 11 C 0.06 1.16 6.28 37.15 0.23 1.39 16 12 C 0.07 1.01 6.10 -3.83 -0.02 0.98 16 13 N -0.69 -10.18 6.50 -113.78 -0.74 -10.92 16 14 C 0.06 0.70 5.69 -3.82 -0.02 0.68 16 15 C -0.12 -1.27 4.74 -26.73 -0.13 -1.39 16 16 C 0.06 0.53 5.28 -3.82 -0.02 0.51 16 17 N -0.54 -5.08 4.88 -234.29 -1.14 -6.22 16 18 C 0.01 0.10 4.94 -3.70 -0.02 0.08 16 19 C 0.06 0.54 7.01 37.21 0.26 0.80 16 20 O -0.39 -3.92 10.83 -35.23 -0.38 -4.30 16 21 C 0.06 0.50 7.01 37.21 0.26 0.76 16 22 C 0.02 0.14 5.63 -3.71 -0.02 0.12 16 23 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16 25 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.36 5.87 8.29 -39.29 -0.33 5.54 16 31 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.80 6.28 -51.93 -0.33 0.47 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.03 0.31 8.08 -51.93 -0.42 -0.11 16 37 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.10 0.89 6.05 -51.93 -0.31 0.57 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 352.69 15.07 5.31 5.31 Total: -1.00 -31.61 352.69 -9.39 -41.00 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -8.12 Total: -1.12 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: 0.31 Total: -4.43 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: -1.15 Total: -43.42 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -0.73 Total: -14.20 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.61 -9.39 -41.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395343163.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.506 kcal (2) G-P(sol) polarization free energy of solvation -31.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds