Wall clock time and date at job start Mon Mar 30 2020 05:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99878 * 2 1 4 4 H 1.48510 * 109.46582 * 239.99591 * 3 2 1 5 5 H 1.48501 * 109.47132 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47518 * 119.99510 * 3 2 1 7 7 C 1.37882 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99404 * 180.02562 * 7 2 1 9 9 C 1.50690 * 120.00112 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.47497 * 179.97438 * 9 7 2 11 11 C 1.42897 * 114.00368 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.46994 * 180.02562 * 11 10 9 13 13 N 1.46895 * 109.47492 * 65.00246 * 12 11 10 14 14 C 1.46897 * 111.00459 * 179.97438 * 13 12 11 15 15 C 1.53006 * 109.47281 * 179.97438 * 14 13 12 16 16 C 1.53002 * 109.46808 * 179.97438 * 15 14 13 17 17 N 1.46908 * 109.46707 * 179.97438 * 16 15 14 18 18 C 1.47024 * 110.99261 * 46.32476 * 17 16 15 19 19 C 1.53103 * 109.24985 * 182.34870 * 18 17 16 20 20 O 1.43012 * 109.29295 * 303.21723 * 19 18 17 21 21 C 1.43011 * 113.74271 * 58.65008 * 20 19 18 22 22 C 1.47018 * 110.99661 * 170.00016 * 17 16 15 23 23 H 0.97001 * 120.00799 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47801 * 59.99412 * 9 7 2 25 25 H 1.09000 * 109.47362 * 299.99571 * 9 7 2 26 26 H 1.09001 * 109.47096 * 60.00243 * 11 10 9 27 27 H 1.09001 * 109.47253 * 300.00244 * 11 10 9 28 28 H 1.09001 * 109.47569 * 304.99653 * 12 11 10 29 29 H 1.09002 * 109.47099 * 184.99751 * 12 11 10 30 30 H 1.00903 * 111.00142 * 303.95413 * 13 12 11 31 31 H 1.09002 * 109.47244 * 60.00222 * 14 13 12 32 32 H 1.08999 * 109.46948 * 299.99737 * 14 13 12 33 33 H 1.09002 * 109.46638 * 60.00050 * 15 14 13 34 34 H 1.08999 * 109.47077 * 299.99857 * 15 14 13 35 35 H 1.09003 * 109.46906 * 60.00364 * 16 15 14 36 36 H 1.08999 * 109.47302 * 299.99863 * 16 15 14 37 37 H 1.08998 * 109.47369 * 62.43595 * 18 17 16 38 38 H 1.08998 * 109.54483 * 302.29802 * 18 17 16 39 39 H 1.09002 * 109.50635 * 183.25881 * 19 18 17 40 40 H 1.09003 * 109.50698 * 63.17493 * 19 18 17 41 41 H 1.08997 * 109.50806 * 61.26171 * 21 20 19 42 42 H 1.08997 * 109.50924 * 181.35636 * 21 20 19 43 43 H 1.08994 * 109.50209 * 57.67478 * 22 17 16 44 44 H 1.08997 * 109.50514 * 297.54292 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 2.1797 -3.5853 0.0005 11 6 1.5652 -4.8754 0.0011 12 6 2.6482 -5.9561 0.0017 13 7 3.4081 -5.8872 1.2569 14 6 4.4589 -6.9131 1.2933 15 6 5.2274 -6.8095 2.6123 16 6 6.3214 -7.8785 2.6503 17 7 7.0596 -7.7787 3.9165 18 6 6.1380 -7.6535 5.0551 19 6 6.9476 -7.4936 6.3447 20 8 7.8359 -8.6054 6.4858 21 6 8.7479 -8.7559 5.3945 22 6 7.9567 -8.9297 4.0954 23 1 -0.4851 0.8400 -0.0004 24 1 0.6247 -2.5572 -0.8896 25 1 0.6241 -2.5568 0.8903 26 1 0.9448 -4.9827 -0.8886 27 1 0.9453 -4.9822 0.8913 28 1 3.3218 -5.7960 -0.8402 29 1 2.1822 -6.9375 -0.0874 30 1 3.7967 -4.9661 1.3943 31 1 5.1452 -6.7599 0.4604 32 1 4.0051 -7.9009 1.2133 33 1 4.5413 -6.9624 3.4454 34 1 5.6812 -5.8217 2.6918 35 1 7.0075 -7.7260 1.8171 36 1 5.8672 -8.8662 2.5710 37 1 5.5195 -8.5485 5.1222 38 1 5.5013 -6.7800 4.9145 39 1 6.2701 -7.4585 7.1978 40 1 7.5247 -6.5700 6.3000 41 1 9.3774 -7.8691 5.3213 42 1 9.3729 -9.6333 5.5607 43 1 8.6468 -8.9874 3.2537 44 1 7.3678 -9.8454 4.1476 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395343163.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:24 Heat of formation + Delta-G solvation = -119.747651 kcal Electronic energy + Delta-G solvation = -20627.971631 eV Core-core repulsion = 17386.026436 eV Total energy + Delta-G solvation = -3241.945196 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.60077 -38.97063 -37.78843 -36.49659 -34.91004 -33.05942 -32.09109 -30.28272 -28.91284 -27.56606 -25.11728 -24.56818 -24.33166 -22.73806 -22.10365 -21.14893 -18.64460 -17.74788 -17.52113 -17.17939 -16.95223 -16.68196 -16.38409 -16.10769 -16.04957 -15.89995 -15.45515 -15.13188 -14.85202 -14.52136 -14.15984 -13.45708 -13.39664 -13.31323 -13.07142 -12.92917 -12.75840 -12.56760 -12.46747 -12.36036 -12.18724 -12.01508 -11.77820 -11.66689 -11.41703 -11.29698 -10.87291 -10.67088 -10.24076 -9.41812 -9.36238 -8.32349 -6.45090 1.40081 1.44859 1.53260 2.34430 2.68703 2.94739 3.01429 3.19312 3.25068 3.88463 3.94800 4.01844 4.02851 4.18491 4.19006 4.25300 4.31639 4.34526 4.43664 4.52719 4.55779 4.60654 4.69004 4.71237 4.74826 4.79942 4.81879 4.85522 4.90608 4.94787 5.01328 5.17090 5.19072 5.23855 5.53951 5.91675 5.95079 5.96407 6.10723 6.16470 6.37647 6.52435 6.80640 7.26803 8.79792 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.021503 B = 0.002638 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.834005 B =10613.479184 C =11443.636993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.984 3.016 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.549 4.549 8 H 0.063 0.937 9 C 0.211 3.789 10 O -0.408 6.408 11 C 0.053 3.947 12 C 0.076 3.924 13 N -0.700 5.700 14 C 0.064 3.936 15 C -0.113 4.113 16 C 0.064 3.936 17 N -0.549 5.549 18 C 0.013 3.987 19 C 0.061 3.939 20 O -0.407 6.407 21 C 0.060 3.940 22 C 0.018 3.982 23 H 0.271 0.729 24 H -0.015 1.015 25 H -0.016 1.016 26 H 0.049 0.951 27 H 0.042 0.958 28 H 0.034 0.966 29 H 0.104 0.896 30 H 0.343 0.657 31 H 0.032 0.968 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.041 0.959 37 H 0.037 0.963 38 H 0.094 0.906 39 H 0.110 0.890 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.116 0.884 43 H 0.099 0.901 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.190 -19.477 7.991 25.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.806 3.194 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.587 4.587 8 H 0.081 0.919 9 C 0.136 3.864 10 O -0.329 6.329 11 C -0.024 4.024 12 C -0.054 4.054 13 N -0.332 5.332 14 C -0.065 4.065 15 C -0.151 4.151 16 C -0.064 4.064 17 N -0.274 5.274 18 C -0.115 4.115 19 C -0.016 4.016 20 O -0.326 6.326 21 C -0.017 4.017 22 C -0.110 4.110 23 H 0.080 0.920 24 H 0.003 0.997 25 H 0.002 0.998 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.122 0.878 30 H 0.161 0.839 31 H 0.050 0.950 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.101 0.899 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.112 0.888 39 H 0.128 0.872 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.134 0.866 43 H 0.118 0.882 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 15.062 -19.436 8.474 26.008 hybrid contribution -0.336 0.644 -0.963 1.207 sum 14.725 -18.792 7.511 25.028 Atomic orbital electron populations 1.70062 1.07803 1.28745 1.50404 1.25984 0.95972 1.03463 0.93907 0.85226 0.78082 0.76653 0.79402 1.19003 1.20033 1.18929 1.21361 0.94121 0.90813 1.52361 0.91898 1.19787 0.88574 0.84630 0.93373 1.87747 1.35536 1.14357 1.95213 1.22619 0.96147 0.83901 0.99746 1.21902 0.94971 0.97750 0.90729 1.60498 1.28209 1.09172 1.35274 1.21906 0.92027 0.95906 0.96672 1.21593 0.96544 0.99333 0.97624 1.22043 0.95161 0.97496 0.91658 1.62290 1.20837 1.41858 1.02465 1.22890 0.95234 1.02041 0.91356 1.22779 0.92381 0.89124 0.97279 1.87949 1.49822 1.50241 1.44553 1.22815 0.91173 1.03031 0.84641 1.22838 0.96816 0.91378 0.99988 0.92025 0.99731 0.99775 0.93302 0.93929 0.94814 0.87755 0.83891 0.95004 0.90245 0.91220 0.92123 0.89932 0.94115 0.94433 0.88800 0.87169 0.92295 0.92235 0.86607 0.88237 0.94264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.38 13.29 21.45 0.28 -56.10 16 2 C 0.01 0.30 5.46 84.66 0.46 0.77 16 3 Si 0.98 44.43 29.54 68.60 2.03 46.46 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 6 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 7 C -0.55 -32.86 9.43 25.60 0.24 -32.62 16 8 H 0.06 3.69 7.81 -2.91 -0.02 3.67 16 9 C 0.21 12.01 5.69 71.23 0.41 12.42 16 10 O -0.41 -19.88 9.85 -148.98 -1.47 -21.35 16 11 C 0.05 1.99 6.28 71.98 0.45 2.44 16 12 C 0.08 2.19 6.10 86.30 0.53 2.72 16 13 N -0.70 -20.08 6.50 -513.90 -3.34 -23.42 16 14 C 0.06 1.38 5.69 86.31 0.49 1.87 16 15 C -0.11 -2.24 4.74 30.60 0.15 -2.10 16 16 C 0.06 1.08 5.28 86.30 0.46 1.53 16 17 N -0.55 -9.74 4.88 -895.15 -4.36 -14.10 16 18 C 0.01 0.23 4.94 86.31 0.43 0.65 16 19 C 0.06 1.03 7.01 72.02 0.50 1.53 16 20 O -0.41 -7.81 10.83 -148.98 -1.61 -9.42 16 21 C 0.06 0.86 7.01 72.02 0.50 1.36 16 22 C 0.02 0.26 5.63 86.31 0.49 0.74 16 23 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 24 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 25 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 26 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.34 11.32 8.29 -89.69 -0.74 10.58 16 31 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 33 H 0.07 1.45 6.28 -2.39 -0.01 1.44 16 34 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.04 0.64 8.08 -2.39 -0.02 0.62 16 37 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.09 1.69 6.05 -2.39 -0.01 1.68 16 39 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -67.37 352.69 -3.17 -70.54 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.20 Total: 16.07 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: 5.10 Total: -8.68 kcal Atomic # 7 Polarization: -86.20 SS G_CDS: -7.42 Total: -93.62 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -3.08 Total: -30.77 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -67.37 -3.17 -70.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395343163.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.208 kcal (2) G-P(sol) polarization free energy of solvation -67.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds