Wall clock time and date at job start Mon Mar 30 2020 05:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99861 * 2 1 4 4 H 1.48503 * 109.47186 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47317 * 299.99816 * 3 2 1 6 6 H 1.48498 * 109.47200 * 60.00238 * 3 2 1 7 7 C 1.37871 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99705 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00400 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47515 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46897 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46700 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46916 * 179.97438 * 12 11 10 14 14 C 1.46905 * 110.99870 * 180.02562 * 13 12 11 15 15 C 1.52993 * 109.47039 * 180.02562 * 14 13 12 16 16 N 1.46902 * 109.47247 * 180.02562 * 15 14 13 17 17 C 1.46472 * 110.99756 * 295.97842 * 16 15 14 18 18 C 1.53243 * 109.85959 * 162.23551 * 17 16 15 19 19 S 1.81893 * 108.50849 * 62.00263 * 18 17 16 20 20 C 1.81900 * 101.91486 * 308.69437 * 19 18 17 21 21 C 1.46467 * 111.00351 * 170.00043 * 16 15 14 22 22 H 0.96997 * 119.99623 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.46804 * 59.99500 * 9 7 2 24 24 H 1.09005 * 109.46778 * 300.00160 * 9 7 2 25 25 H 1.08993 * 109.47020 * 59.99491 * 10 9 7 26 26 H 1.09005 * 109.46779 * 300.00252 * 10 9 7 27 27 H 1.08995 * 109.47485 * 60.00352 * 11 10 9 28 28 H 1.08996 * 109.47010 * 299.99144 * 11 10 9 29 29 H 1.09004 * 109.46889 * 60.00145 * 12 11 10 30 30 H 1.08995 * 109.47384 * 299.99786 * 12 11 10 31 31 H 1.00901 * 111.00067 * 303.95263 * 13 12 11 32 32 H 1.09001 * 109.46798 * 300.00327 * 14 13 12 33 33 H 1.08998 * 109.46961 * 60.00043 * 14 13 12 34 34 H 1.09001 * 109.47393 * 299.99719 * 15 14 13 35 35 H 1.08998 * 109.47408 * 60.00073 * 15 14 13 36 36 H 1.08996 * 109.40584 * 282.35395 * 17 16 15 37 37 H 1.09003 * 109.40270 * 42.11549 * 17 16 15 38 38 H 1.09007 * 109.63173 * 302.29448 * 18 17 16 39 39 H 1.09003 * 109.79297 * 181.80914 * 18 17 16 40 40 H 1.08994 * 109.63329 * 291.59955 * 20 19 18 41 41 H 1.08999 * 109.79659 * 171.10624 * 20 19 18 42 42 H 1.09005 * 109.40300 * 317.88144 * 21 16 15 43 43 H 1.09001 * 109.40980 * 77.72271 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4803 -4.9870 -0.0033 12 6 2.4746 -6.1499 -0.0037 13 7 1.7401 -7.4221 -0.0048 14 6 2.6646 -8.5638 -0.0046 15 6 1.8645 -9.8679 -0.0065 16 7 2.7890 -11.0095 -0.0056 17 6 3.5866 -11.0399 -1.2337 18 6 4.8154 -11.9337 -1.0345 19 16 4.2478 -13.6265 -0.6870 20 6 3.0595 -13.3544 0.6631 21 6 2.0725 -12.2651 0.2301 22 1 -0.4849 0.8401 -0.0004 23 1 0.6248 -2.5562 -0.8919 24 1 0.6241 -2.5574 0.8880 25 1 2.8713 -3.6047 0.8889 26 1 2.8727 -3.6039 -0.8910 27 1 0.8547 -5.0442 -0.8940 28 1 0.8528 -5.0454 0.8860 29 1 3.1006 -6.0930 0.8869 30 1 3.1019 -6.0914 -0.8931 31 1 1.1033 -7.4728 0.7763 32 1 3.2933 -8.5223 -0.8941 33 1 3.2918 -8.5232 0.8859 34 1 1.2356 -9.9096 0.8828 35 1 1.2376 -9.9083 -0.8971 36 1 2.9806 -11.4339 -2.0495 37 1 3.9104 -10.0287 -1.4803 38 1 5.4040 -11.5650 -0.1943 39 1 5.4249 -11.9300 -1.9381 40 1 3.5904 -13.0325 1.5589 41 1 2.5184 -14.2776 0.8702 42 1 1.3301 -12.1166 1.0143 43 1 1.5728 -12.5748 -0.6878 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395418316.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:21 Heat of formation + Delta-G solvation = -17.534430 kcal Electronic energy + Delta-G solvation = -18168.045591 eV Core-core repulsion = 15373.285564 eV Total energy + Delta-G solvation = -2794.760027 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.95855 -36.67233 -34.29761 -32.50288 -32.01415 -31.14192 -28.69765 -26.50684 -24.17178 -24.07399 -22.24324 -21.47838 -20.99912 -19.95224 -17.43301 -16.36169 -16.18081 -15.96519 -15.75554 -14.86487 -14.58969 -14.51823 -14.39804 -14.02681 -13.89826 -13.71860 -13.00884 -12.75423 -12.52904 -12.34177 -12.11293 -11.93759 -11.69269 -11.50877 -11.28621 -11.02647 -10.93957 -10.55714 -10.47580 -10.42747 -10.08596 -9.63383 -9.26102 -8.99410 -8.86501 -8.45534 -8.32774 -8.08198 -5.97817 -3.99937 1.38334 2.11767 3.20094 3.31753 3.39046 3.43346 4.22480 4.38563 4.40927 4.48219 4.57732 4.72663 4.78533 4.86989 4.94110 5.02096 5.19324 5.22843 5.35564 5.37503 5.37980 5.39458 5.44573 5.51692 5.67055 5.73957 5.88827 6.14140 6.21503 6.49218 6.52276 6.57365 6.81732 6.94682 7.00858 7.21761 7.35185 7.71444 7.86939 8.03375 8.46222 9.07812 9.63956 11.13568 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.060225 B = 0.002072 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.809595 B =13511.526139 C =13816.996089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.109 4.109 11 C -0.115 4.115 12 C 0.061 3.939 13 N -0.692 5.692 14 C 0.060 3.940 15 C 0.062 3.938 16 N -0.553 5.553 17 C 0.050 3.950 18 C -0.074 4.074 19 S -0.278 6.278 20 C -0.074 4.074 21 C 0.056 3.944 22 H 0.259 0.741 23 H 0.016 0.984 24 H 0.014 0.986 25 H 0.045 0.955 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.027 0.973 30 H 0.068 0.932 31 H 0.340 0.660 32 H 0.071 0.929 33 H 0.037 0.963 34 H 0.076 0.924 35 H 0.047 0.953 36 H 0.050 0.950 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.086 0.914 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.861 -27.553 0.264 28.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.153 4.153 12 C -0.067 4.067 13 N -0.323 5.323 14 C -0.070 4.070 15 C -0.065 4.065 16 N -0.278 5.278 17 C -0.079 4.079 18 C -0.222 4.222 19 S -0.052 6.052 20 C -0.223 4.223 21 C -0.073 4.073 22 H 0.069 0.931 23 H 0.034 0.966 24 H 0.033 0.967 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.045 0.955 30 H 0.087 0.913 31 H 0.157 0.843 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.126 0.874 40 H 0.110 0.890 41 H 0.125 0.875 42 H 0.105 0.895 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.269 -28.362 -0.534 29.052 hybrid contribution -0.094 1.963 0.879 2.153 sum 6.174 -26.399 0.345 27.114 Atomic orbital electron populations 1.69981 1.06039 1.26404 1.51133 1.25044 0.94865 0.99271 0.95458 0.86549 0.80110 0.83864 0.77554 1.19772 1.21025 1.21045 1.21329 0.93055 0.91202 1.50162 0.92717 1.19100 0.94039 0.91369 0.97164 1.21589 0.99089 0.93946 1.00096 1.21639 0.97866 0.93835 1.02003 1.22064 0.96210 0.88282 1.00176 1.60467 1.19976 1.01819 1.50081 1.21938 0.94597 0.89400 1.01053 1.22007 0.93734 0.89012 1.01773 1.61082 1.26581 1.03218 1.36949 1.22320 0.93990 1.00835 0.90780 1.23517 0.99944 0.93027 1.05732 1.86968 1.55547 1.14608 1.48077 1.23500 0.98215 1.01818 0.98757 1.22208 0.95029 0.88738 1.01331 0.93109 0.96596 0.96728 0.93653 0.93446 0.91659 0.92716 0.95459 0.91307 0.84295 0.91072 0.94517 0.90560 0.93465 0.93178 0.88958 0.88966 0.87415 0.88998 0.87481 0.89537 0.93209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 8 H 0.05 1.53 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -2.25 5.15 -26.73 -0.14 -2.39 16 11 C -0.12 -1.95 5.47 -26.73 -0.15 -2.10 16 12 C 0.06 0.85 5.69 -3.82 -0.02 0.83 16 13 N -0.69 -8.21 6.50 -113.78 -0.74 -8.95 16 14 C 0.06 0.59 5.61 -3.82 -0.02 0.57 16 15 C 0.06 0.52 5.22 -3.83 -0.02 0.50 16 16 N -0.55 -4.39 4.41 -235.04 -1.04 -5.43 16 17 C 0.05 0.38 5.29 -3.93 -0.02 0.36 16 18 C -0.07 -0.54 6.69 37.28 0.25 -0.29 16 19 S -0.28 -2.36 22.40 -107.50 -2.41 -4.77 16 20 C -0.07 -0.50 6.69 37.29 0.25 -0.25 16 21 C 0.06 0.39 5.42 -3.93 -0.02 0.37 16 22 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.34 3.73 8.73 -39.29 -0.34 3.39 16 32 H 0.07 0.71 6.19 -51.93 -0.32 0.39 16 33 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.60 7.83 -51.93 -0.41 0.19 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.05 0.40 7.91 -51.93 -0.41 -0.01 16 37 H 0.09 0.69 5.77 -51.93 -0.30 0.39 16 38 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 39 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.09 0.50 7.76 -51.93 -0.40 0.10 16 43 H 0.05 0.36 7.91 -51.93 -0.41 -0.05 16 LS Contribution 350.37 15.07 5.28 5.28 Total: -1.00 -30.63 350.37 -11.68 -42.32 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -8.06 Total: -2.95 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: -0.44 Total: -15.79 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: -1.04 Total: -40.95 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: -2.36 SS G_CDS: -2.41 Total: -4.77 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.63 -11.68 -42.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395418316.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.782 kcal (2) G-P(sol) polarization free energy of solvation -30.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds