Wall clock time and date at job start Mon Mar 30 2020 05:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99861 * 2 1 4 4 H 1.48503 * 109.47186 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47317 * 299.99816 * 3 2 1 6 6 H 1.48498 * 109.47200 * 60.00238 * 3 2 1 7 7 C 1.37871 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99705 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00400 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47515 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46897 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46700 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46916 * 179.97438 * 12 11 10 14 14 C 1.46905 * 110.99870 * 180.02562 * 13 12 11 15 15 C 1.52993 * 109.47039 * 180.02562 * 14 13 12 16 16 N 1.46902 * 109.47247 * 180.02562 * 15 14 13 17 17 C 1.46472 * 110.99756 * 295.97842 * 16 15 14 18 18 C 1.53243 * 109.85959 * 162.23551 * 17 16 15 19 19 S 1.81893 * 108.50849 * 62.00263 * 18 17 16 20 20 C 1.81900 * 101.91486 * 308.69437 * 19 18 17 21 21 C 1.46467 * 111.00351 * 170.00043 * 16 15 14 22 22 H 0.96997 * 119.99623 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.46804 * 59.99500 * 9 7 2 24 24 H 1.09005 * 109.46778 * 300.00160 * 9 7 2 25 25 H 1.08993 * 109.47020 * 59.99491 * 10 9 7 26 26 H 1.09005 * 109.46779 * 300.00252 * 10 9 7 27 27 H 1.08995 * 109.47485 * 60.00352 * 11 10 9 28 28 H 1.08996 * 109.47010 * 299.99144 * 11 10 9 29 29 H 1.09004 * 109.46889 * 60.00145 * 12 11 10 30 30 H 1.08995 * 109.47384 * 299.99786 * 12 11 10 31 31 H 1.00901 * 111.00067 * 303.95263 * 13 12 11 32 32 H 1.09001 * 109.46798 * 300.00327 * 14 13 12 33 33 H 1.08998 * 109.46961 * 60.00043 * 14 13 12 34 34 H 1.09001 * 109.47393 * 299.99719 * 15 14 13 35 35 H 1.08998 * 109.47408 * 60.00073 * 15 14 13 36 36 H 1.08996 * 109.40584 * 282.35395 * 17 16 15 37 37 H 1.09003 * 109.40270 * 42.11549 * 17 16 15 38 38 H 1.09007 * 109.63173 * 302.29448 * 18 17 16 39 39 H 1.09003 * 109.79297 * 181.80914 * 18 17 16 40 40 H 1.08994 * 109.63329 * 291.59955 * 20 19 18 41 41 H 1.08999 * 109.79659 * 171.10624 * 20 19 18 42 42 H 1.09005 * 109.40300 * 317.88144 * 21 16 15 43 43 H 1.09001 * 109.40980 * 77.72271 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4803 -4.9870 -0.0033 12 6 2.4746 -6.1499 -0.0037 13 7 1.7401 -7.4221 -0.0048 14 6 2.6646 -8.5638 -0.0046 15 6 1.8645 -9.8679 -0.0065 16 7 2.7890 -11.0095 -0.0056 17 6 3.5866 -11.0399 -1.2337 18 6 4.8154 -11.9337 -1.0345 19 16 4.2478 -13.6265 -0.6870 20 6 3.0595 -13.3544 0.6631 21 6 2.0725 -12.2651 0.2301 22 1 -0.4849 0.8401 -0.0004 23 1 0.6248 -2.5562 -0.8919 24 1 0.6241 -2.5574 0.8880 25 1 2.8713 -3.6047 0.8889 26 1 2.8727 -3.6039 -0.8910 27 1 0.8547 -5.0442 -0.8940 28 1 0.8528 -5.0454 0.8860 29 1 3.1006 -6.0930 0.8869 30 1 3.1019 -6.0914 -0.8931 31 1 1.1033 -7.4728 0.7763 32 1 3.2933 -8.5223 -0.8941 33 1 3.2918 -8.5232 0.8859 34 1 1.2356 -9.9096 0.8828 35 1 1.2376 -9.9083 -0.8971 36 1 2.9806 -11.4339 -2.0495 37 1 3.9104 -10.0287 -1.4803 38 1 5.4040 -11.5650 -0.1943 39 1 5.4249 -11.9300 -1.9381 40 1 3.5904 -13.0325 1.5589 41 1 2.5184 -14.2776 0.8702 42 1 1.3301 -12.1166 1.0143 43 1 1.5728 -12.5748 -0.6878 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395418316.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:21 Heat of formation + Delta-G solvation = -36.998097 kcal Electronic energy + Delta-G solvation = -18168.889599 eV Core-core repulsion = 15373.285564 eV Total energy + Delta-G solvation = -2795.604035 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.60830 -37.78964 -35.95413 -34.22023 -32.61769 -32.17751 -30.09865 -27.73740 -25.70506 -24.75013 -23.08137 -22.81578 -21.89413 -21.45740 -18.43911 -18.05208 -17.22672 -16.72256 -16.53498 -16.38037 -16.00258 -15.38541 -15.16698 -14.94637 -14.68677 -14.63201 -14.33386 -13.99248 -13.62345 -13.53575 -13.12419 -13.10155 -12.84361 -12.70034 -12.60444 -12.32091 -12.20678 -12.11386 -12.04820 -11.56673 -11.36486 -11.29642 -10.98502 -10.68293 -10.56095 -9.49795 -9.39238 -8.73732 -8.20228 -6.31533 0.80743 1.39520 1.39908 1.53417 1.54732 2.40555 2.55193 3.12483 3.37437 3.77894 3.82959 3.92847 4.10899 4.15580 4.18406 4.22978 4.30085 4.36422 4.42113 4.53772 4.56826 4.65321 4.67864 4.74907 4.81395 4.83195 4.88858 4.91949 4.96469 5.02735 5.24754 5.27649 5.36276 5.55499 5.78291 5.85055 5.87643 5.97014 6.07965 6.25856 6.45073 6.86366 7.37792 8.91809 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.060225 B = 0.002072 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.809595 B =13511.526139 C =13816.996089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.005 4.005 3 Si 0.967 3.033 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.022 3.978 10 C -0.098 4.098 11 C -0.105 4.105 12 C 0.073 3.927 13 N -0.697 5.697 14 C 0.066 3.934 15 C 0.070 3.930 16 N -0.557 5.557 17 C 0.052 3.948 18 C -0.064 4.064 19 S -0.319 6.319 20 C -0.063 4.063 21 C 0.057 3.943 22 H 0.263 0.737 23 H -0.011 1.011 24 H -0.010 1.010 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.033 0.967 30 H 0.070 0.930 31 H 0.345 0.655 32 H 0.071 0.929 33 H 0.035 0.965 34 H 0.084 0.916 35 H 0.040 0.960 36 H 0.044 0.956 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.118 0.882 40 H 0.091 0.909 41 H 0.122 0.878 42 H 0.100 0.900 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.907 -27.903 0.630 28.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.791 3.209 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.015 4.015 10 C -0.136 4.136 11 C -0.143 4.143 12 C -0.056 4.056 13 N -0.329 5.329 14 C -0.064 4.064 15 C -0.057 4.057 16 N -0.282 5.282 17 C -0.078 4.078 18 C -0.212 4.212 19 S -0.093 6.093 20 C -0.212 4.212 21 C -0.072 4.072 22 H 0.072 0.928 23 H 0.008 0.992 24 H 0.008 0.992 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.088 0.912 31 H 0.164 0.836 32 H 0.089 0.911 33 H 0.054 0.946 34 H 0.103 0.897 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.136 0.864 40 H 0.110 0.890 41 H 0.140 0.860 42 H 0.119 0.881 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.322 -28.735 -0.166 29.654 hybrid contribution -0.462 2.042 0.771 2.231 sum 6.860 -26.694 0.605 27.568 Atomic orbital electron populations 1.70112 1.07823 1.27690 1.51849 1.26035 0.95836 1.03522 0.94814 0.85373 0.79061 0.78645 0.77808 1.18540 1.20348 1.20306 1.21779 0.93573 0.92534 1.50252 0.92199 1.19035 0.94543 0.93313 0.94647 1.21400 0.97983 0.93728 1.00458 1.21460 0.98040 0.93287 1.01544 1.21819 0.95226 0.87999 1.00537 1.60400 1.20328 1.01558 1.50580 1.21906 0.94332 0.89215 1.00927 1.21889 0.93482 0.88512 1.01839 1.61096 1.26608 1.03514 1.37021 1.22304 0.93999 1.00904 0.90552 1.23502 0.99809 0.91769 1.06161 1.87105 1.56635 1.16236 1.49339 1.23523 0.97579 1.02487 0.97592 1.22242 0.95183 0.88204 1.01602 0.92785 0.99240 0.99157 0.93105 0.93108 0.92637 0.92716 0.94894 0.91172 0.83638 0.91117 0.94650 0.89744 0.94156 0.93731 0.88755 0.89101 0.86403 0.89040 0.86000 0.88148 0.93648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.76 13.29 21.45 0.28 -57.47 16 2 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 3 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.54 -31.53 9.11 25.60 0.23 -31.30 16 8 H 0.06 3.33 7.74 -2.90 -0.02 3.30 16 9 C 0.02 1.17 4.97 29.85 0.15 1.32 16 10 C -0.10 -4.01 5.15 30.59 0.16 -3.85 16 11 C -0.11 -3.50 5.47 30.59 0.17 -3.33 16 12 C 0.07 1.91 5.69 86.30 0.49 2.40 16 13 N -0.70 -15.34 6.50 -513.88 -3.34 -18.68 16 14 C 0.07 1.17 5.61 86.30 0.48 1.66 16 15 C 0.07 1.06 5.22 86.30 0.45 1.51 16 16 N -0.56 -7.91 4.41 -897.53 -3.96 -11.87 16 17 C 0.05 0.72 5.29 86.47 0.46 1.18 16 18 C -0.06 -0.86 6.69 72.06 0.48 -0.38 16 19 S -0.32 -5.15 22.40 -56.49 -1.27 -6.41 16 20 C -0.06 -0.75 6.69 72.07 0.48 -0.27 16 21 C 0.06 0.68 5.42 86.47 0.47 1.15 16 22 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 23 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 24 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 25 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 27 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.35 6.98 8.73 -89.69 -0.78 6.20 16 32 H 0.07 1.28 6.19 -2.39 -0.01 1.27 16 33 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.08 1.14 7.83 -2.39 -0.02 1.12 16 35 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.04 0.68 7.91 -2.39 -0.02 0.66 16 37 H 0.09 1.28 5.77 -2.39 -0.01 1.26 16 38 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 39 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.10 0.94 7.76 -2.38 -0.02 0.92 16 43 H 0.05 0.60 7.91 -2.39 -0.02 0.58 16 Total: -1.00 -65.37 350.37 -1.60 -66.97 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 0.17 Total: 10.44 kcal Atomic # 6 Polarization: -34.21 SS G_CDS: 4.48 Total: -29.73 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -7.02 Total: -88.02 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 16 Polarization: -5.15 SS G_CDS: -1.27 Total: -6.41 kcal Total: -65.37 -1.60 -66.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395418316.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.969 kcal (2) G-P(sol) polarization free energy of solvation -65.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds