Wall clock time and date at job start Mon Mar 30 2020 05:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42902 * 113.99626 * 2 1 4 4 H 1.08995 * 110.35339 * 27.86070 * 3 2 1 5 5 C 1.53996 * 110.30895 * 265.71608 * 3 2 1 6 6 N 1.47898 * 107.06161 * 242.30947 * 5 3 2 7 7 C 1.46895 * 111.00253 * 214.15676 * 6 5 3 8 8 C 1.50701 * 109.47274 * 187.27114 * 7 6 5 9 9 O 1.21282 * 119.99795 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00259 * 180.02562 * 8 7 6 11 11 C 1.46503 * 119.99700 * 359.97438 * 10 8 7 12 12 C 1.46502 * 120.00336 * 179.97438 * 10 8 7 13 13 C 1.50699 * 109.47031 * 89.99914 * 12 10 8 14 14 H 1.07999 * 119.99977 * 0.02562 * 13 12 10 15 15 C 1.37878 * 120.00096 * 180.02562 * 13 12 10 16 16 N 1.31507 * 119.99854 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99734 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47010 * 90.00190 * 17 15 13 19 19 H 1.48502 * 109.46678 * 210.00062 * 17 15 13 20 20 H 1.48492 * 109.47031 * 329.99747 * 17 15 13 21 21 C 1.48534 * 105.81836 * 334.67184 * 6 5 3 22 22 C 1.54594 * 110.30634 * 150.00405 * 3 2 1 23 23 H 1.09002 * 110.72539 * 22.51488 * 22 3 2 24 24 O 1.42899 * 110.87605 * 259.30060 * 22 3 2 25 25 H 1.08993 * 109.46617 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46951 * 299.99742 * 1 2 3 27 27 H 1.08991 * 109.47114 * 59.99912 * 1 2 3 28 28 H 1.09002 * 109.91261 * 122.95639 * 5 3 2 29 29 H 1.09005 * 110.07833 * 1.75955 * 5 3 2 30 30 H 1.09006 * 109.47053 * 307.26874 * 7 6 5 31 31 H 1.09001 * 109.47132 * 67.27027 * 7 6 5 32 32 H 1.08995 * 109.47034 * 90.00029 * 11 10 8 33 33 H 1.09001 * 109.46937 * 210.00142 * 11 10 8 34 34 H 1.08996 * 109.47184 * 330.00106 * 11 10 8 35 35 H 1.09001 * 109.47388 * 210.00061 * 12 10 8 36 36 H 1.09000 * 109.46881 * 330.00450 * 12 10 8 37 37 H 0.97008 * 119.99914 * 179.97438 * 16 15 13 38 38 H 1.08991 * 110.66978 * 280.77118 * 21 6 5 39 39 H 1.09006 * 110.80663 * 157.70372 * 21 6 5 40 40 H 0.96703 * 114.00173 * 182.56048 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3390 2.0193 0.4776 5 6 2.3262 1.7499 -1.4402 6 7 3.7908 1.9373 -1.5251 7 6 4.1287 3.0389 -2.4362 8 6 5.6216 3.0853 -2.6363 9 8 6.3340 2.2803 -2.0747 10 7 6.1652 4.0220 -3.4384 11 6 5.3047 4.9948 -4.1163 12 6 7.6166 4.0676 -3.6325 13 6 7.9936 3.2034 -4.8082 14 1 7.2285 2.6737 -5.3562 15 6 9.3152 3.0891 -5.1841 16 7 9.6441 2.3346 -6.2098 17 14 10.6385 4.0049 -4.2356 18 1 11.1373 3.1484 -3.1297 19 1 11.7612 4.3378 -5.1489 20 1 10.0691 5.2562 -3.6745 21 6 4.2419 2.2336 -0.1413 22 6 3.3756 1.2850 0.7248 23 1 3.7939 0.2785 0.7310 24 8 3.2526 1.7877 2.0568 25 1 -0.3632 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8183 2.6894 -1.6587 29 1 2.0082 0.9831 -2.1467 30 1 3.6382 2.8795 -3.3966 31 1 3.7901 3.9820 -2.0073 32 1 5.1786 5.8723 -3.4822 33 1 5.7639 5.2910 -5.0594 34 1 4.3314 4.5448 -4.3116 35 1 7.9257 5.0953 -3.8231 36 1 8.1148 3.6986 -2.7359 37 1 10.5739 2.2545 -6.4745 38 1 4.0442 3.2748 0.1132 39 1 5.3008 2.0040 -0.0217 40 1 4.0893 1.8316 2.5395 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395487354.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:47 Heat of formation + Delta-G solvation = -102.211982 kcal Electronic energy + Delta-G solvation = -21635.201080 eV Core-core repulsion = 18258.183194 eV Total energy + Delta-G solvation = -3377.017886 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.03779 -38.78899 -37.01566 -35.98857 -34.82316 -32.56049 -30.99134 -28.71666 -28.36539 -27.01837 -26.10717 -25.29671 -22.40274 -21.39314 -20.96589 -18.58258 -17.91440 -16.95046 -16.81824 -16.39854 -15.97971 -15.46219 -15.24750 -15.16233 -14.47586 -14.32954 -14.03223 -13.61583 -13.22105 -12.88742 -12.71011 -12.58267 -12.51005 -12.27363 -12.02987 -12.01476 -11.62110 -11.48063 -11.43059 -10.89216 -10.76282 -10.52407 -10.18650 -10.13576 -9.87076 -9.52700 -9.03032 -8.57957 -8.38204 -7.69555 -6.07360 -4.06120 3.29288 3.32302 3.34201 3.35505 3.36944 3.51009 3.94422 4.29056 4.40197 4.41923 4.66468 4.87541 5.04533 5.04941 5.11856 5.13903 5.23477 5.26776 5.34585 5.37376 5.40283 5.46065 5.61555 5.68165 5.79702 5.82274 5.99667 6.12954 6.63228 6.72095 6.83016 6.95609 6.98114 7.34264 7.43182 7.61952 8.24404 8.48389 8.94973 9.01317 9.52713 11.06133 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.030590 B = 0.003924 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.102576 B = 7133.631892 C = 7326.186528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.087 3.913 4 H 0.079 0.921 5 C 0.018 3.982 6 N -0.487 5.487 7 C 0.030 3.970 8 C 0.509 3.491 9 O -0.522 6.522 10 N -0.601 5.601 11 C 0.083 3.917 12 C 0.217 3.783 13 C -0.529 4.529 14 H 0.074 0.926 15 C 0.072 3.928 16 N -0.897 5.897 17 Si 0.877 3.123 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.267 1.267 21 C 0.009 3.991 22 C 0.101 3.899 23 H 0.087 0.913 24 O -0.565 6.565 25 H 0.087 0.913 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.052 0.948 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.029 0.971 36 H 0.036 0.964 37 H 0.264 0.736 38 H 0.050 0.950 39 H 0.106 0.894 40 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.755 3.226 12.192 21.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.292 6.292 3 C 0.028 3.972 4 H 0.097 0.903 5 C -0.111 4.111 6 N -0.213 5.213 7 C -0.102 4.102 8 C 0.294 3.706 9 O -0.398 6.398 10 N -0.334 5.334 11 C -0.061 4.061 12 C 0.097 3.903 13 C -0.567 4.567 14 H 0.093 0.907 15 C -0.131 4.131 16 N -0.536 5.536 17 Si 0.704 3.296 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.191 1.191 21 C -0.119 4.119 22 C 0.041 3.959 23 H 0.105 0.895 24 O -0.371 6.371 25 H 0.105 0.895 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.113 0.887 30 H 0.120 0.880 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.047 0.953 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.124 0.876 40 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -17.468 2.144 11.999 21.300 hybrid contribution 0.696 1.438 0.511 1.677 sum -16.772 3.582 12.509 21.228 Atomic orbital electron populations 1.22816 0.80988 1.02886 0.99940 1.87981 1.19690 1.26724 1.94801 1.22823 0.94631 0.85495 0.94230 0.90345 1.23417 0.89294 1.01186 0.97154 1.64416 1.10126 1.39870 1.06849 1.22268 0.95901 0.93171 0.98825 1.20077 0.89183 0.81273 0.80044 1.90651 1.62507 1.38254 1.48361 1.47842 1.09123 1.30837 1.45613 1.21657 0.94445 0.91831 0.98139 1.19642 0.75657 0.97082 0.97929 1.21338 0.94102 1.28539 1.12744 0.90749 1.24865 0.98346 0.94997 0.94851 1.69900 1.18151 1.38865 1.26662 0.86839 0.81856 0.80686 0.80214 1.19897 1.21084 1.19134 1.23977 1.02156 0.97757 0.88052 1.22753 0.93948 0.97665 0.81509 0.89509 1.86409 1.36889 1.87915 1.25881 0.89480 0.94006 0.93947 0.92952 0.88723 0.87967 0.92275 0.93758 0.90447 0.92326 0.95299 0.94611 0.92568 0.93163 0.87570 0.76694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.85 101.05 1.10 1.35 16 2 O -0.37 -4.58 10.30 -35.23 -0.36 -4.95 16 3 C 0.09 1.02 3.24 -25.37 -0.08 0.93 16 4 H 0.08 0.83 7.75 -51.93 -0.40 0.43 16 5 C 0.02 0.21 6.49 -2.76 -0.02 0.19 16 6 N -0.49 -7.33 4.96 -231.89 -1.15 -8.48 16 7 C 0.03 0.44 3.73 -4.98 -0.02 0.42 16 8 C 0.51 10.33 7.48 -10.99 -0.08 10.24 16 9 O -0.52 -12.78 14.43 5.56 0.08 -12.70 16 10 N -0.60 -12.30 2.86 -182.95 -0.52 -12.82 16 11 C 0.08 1.24 10.24 59.85 0.61 1.86 16 12 C 0.22 5.33 4.23 -5.19 -0.02 5.31 16 13 C -0.53 -15.33 9.94 -34.44 -0.34 -15.67 16 14 H 0.07 2.37 8.06 -52.49 -0.42 1.95 16 15 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 16 N -0.90 -27.91 13.96 55.43 0.77 -27.13 16 17 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 18 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 21 C 0.01 0.12 5.58 -1.90 -0.01 0.11 16 22 C 0.10 1.26 4.17 -24.87 -0.10 1.15 16 23 H 0.09 1.17 8.08 -51.93 -0.42 0.75 16 24 O -0.57 -6.28 13.41 -35.23 -0.47 -6.75 16 25 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.04 0.31 8.11 -51.93 -0.42 -0.11 16 27 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.51 7.77 -51.93 -0.40 0.10 16 29 H 0.09 1.13 7.97 -51.93 -0.41 0.72 16 30 H 0.10 1.37 7.37 -51.93 -0.38 0.98 16 31 H 0.06 0.72 7.86 -51.93 -0.41 0.31 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 34 H 0.06 0.71 6.44 -51.93 -0.33 0.38 16 35 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 36 H 0.04 0.93 6.85 -51.93 -0.36 0.58 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 38 H 0.05 0.65 7.85 -51.93 -0.41 0.24 16 39 H 0.11 1.70 6.92 -51.93 -0.36 1.34 16 40 H 0.38 2.76 9.12 45.56 0.42 3.17 16 LS Contribution 327.65 15.07 4.94 4.94 Total: -1.00 -36.25 327.65 -5.99 -42.24 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -5.54 Total: 0.78 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 0.93 Total: 7.91 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: -0.90 Total: -48.44 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.76 Total: -24.40 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -36.25 -5.99 -42.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395487354.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.974 kcal (2) G-P(sol) polarization free energy of solvation -36.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds