Wall clock time and date at job start Mon Mar 30 2020 05:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42902 * 113.99626 * 2 1 4 4 H 1.08995 * 110.35339 * 27.86070 * 3 2 1 5 5 C 1.53996 * 110.30895 * 265.71608 * 3 2 1 6 6 N 1.47898 * 107.06161 * 242.30947 * 5 3 2 7 7 C 1.46895 * 111.00253 * 214.15676 * 6 5 3 8 8 C 1.50701 * 109.47274 * 187.27114 * 7 6 5 9 9 O 1.21282 * 119.99795 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00259 * 180.02562 * 8 7 6 11 11 C 1.46503 * 119.99700 * 359.97438 * 10 8 7 12 12 C 1.46502 * 120.00336 * 179.97438 * 10 8 7 13 13 C 1.50699 * 109.47031 * 89.99914 * 12 10 8 14 14 H 1.07999 * 119.99977 * 0.02562 * 13 12 10 15 15 C 1.37878 * 120.00096 * 180.02562 * 13 12 10 16 16 N 1.31507 * 119.99854 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99734 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47010 * 90.00190 * 17 15 13 19 19 H 1.48502 * 109.46678 * 210.00062 * 17 15 13 20 20 H 1.48492 * 109.47031 * 329.99747 * 17 15 13 21 21 C 1.48534 * 105.81836 * 334.67184 * 6 5 3 22 22 C 1.54594 * 110.30634 * 150.00405 * 3 2 1 23 23 H 1.09002 * 110.72539 * 22.51488 * 22 3 2 24 24 O 1.42899 * 110.87605 * 259.30060 * 22 3 2 25 25 H 1.08993 * 109.46617 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46951 * 299.99742 * 1 2 3 27 27 H 1.08991 * 109.47114 * 59.99912 * 1 2 3 28 28 H 1.09002 * 109.91261 * 122.95639 * 5 3 2 29 29 H 1.09005 * 110.07833 * 1.75955 * 5 3 2 30 30 H 1.09006 * 109.47053 * 307.26874 * 7 6 5 31 31 H 1.09001 * 109.47132 * 67.27027 * 7 6 5 32 32 H 1.08995 * 109.47034 * 90.00029 * 11 10 8 33 33 H 1.09001 * 109.46937 * 210.00142 * 11 10 8 34 34 H 1.08996 * 109.47184 * 330.00106 * 11 10 8 35 35 H 1.09001 * 109.47388 * 210.00061 * 12 10 8 36 36 H 1.09000 * 109.46881 * 330.00450 * 12 10 8 37 37 H 0.97008 * 119.99914 * 179.97438 * 16 15 13 38 38 H 1.08991 * 110.66978 * 280.77118 * 21 6 5 39 39 H 1.09006 * 110.80663 * 157.70372 * 21 6 5 40 40 H 0.96703 * 114.00173 * 182.56048 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3390 2.0193 0.4776 5 6 2.3262 1.7499 -1.4402 6 7 3.7908 1.9373 -1.5251 7 6 4.1287 3.0389 -2.4362 8 6 5.6216 3.0853 -2.6363 9 8 6.3340 2.2803 -2.0747 10 7 6.1652 4.0220 -3.4384 11 6 5.3047 4.9948 -4.1163 12 6 7.6166 4.0676 -3.6325 13 6 7.9936 3.2034 -4.8082 14 1 7.2285 2.6737 -5.3562 15 6 9.3152 3.0891 -5.1841 16 7 9.6441 2.3346 -6.2098 17 14 10.6385 4.0049 -4.2356 18 1 11.1373 3.1484 -3.1297 19 1 11.7612 4.3378 -5.1489 20 1 10.0691 5.2562 -3.6745 21 6 4.2419 2.2336 -0.1413 22 6 3.3756 1.2850 0.7248 23 1 3.7939 0.2785 0.7310 24 8 3.2526 1.7877 2.0568 25 1 -0.3632 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8183 2.6894 -1.6587 29 1 2.0082 0.9831 -2.1467 30 1 3.6382 2.8795 -3.3966 31 1 3.7901 3.9820 -2.0073 32 1 5.1786 5.8723 -3.4822 33 1 5.7639 5.2910 -5.0594 34 1 4.3314 4.5448 -4.3116 35 1 7.9257 5.0953 -3.8231 36 1 8.1148 3.6986 -2.7359 37 1 10.5739 2.2545 -6.4745 38 1 4.0442 3.2748 0.1132 39 1 5.3008 2.0040 -0.0217 40 1 4.0893 1.8316 2.5395 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395487354.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:46 Heat of formation + Delta-G solvation = -134.363735 kcal Electronic energy + Delta-G solvation = -21636.595285 eV Core-core repulsion = 18258.183194 eV Total energy + Delta-G solvation = -3378.412091 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.18340 -40.11216 -37.91759 -37.01781 -36.45582 -34.70054 -32.16901 -30.45496 -29.32993 -27.98586 -27.29498 -26.58878 -24.14887 -22.55966 -21.89996 -20.05853 -19.14368 -18.85720 -18.00693 -17.57207 -17.10487 -16.81382 -16.53197 -16.16124 -15.96386 -15.49678 -15.18863 -14.96359 -14.60305 -14.27616 -13.88066 -13.80205 -13.69277 -13.62064 -13.49128 -13.20596 -12.91131 -12.82027 -12.58102 -12.42492 -12.28946 -12.00250 -11.74476 -11.66925 -11.12198 -10.83325 -10.74877 -10.52511 -9.48032 -9.33087 -8.33757 -6.38978 1.32516 1.37181 1.45412 1.81661 2.19976 2.31271 2.55856 2.84494 3.00712 3.32673 3.45978 3.71492 3.81418 4.02586 4.14799 4.20538 4.26643 4.38752 4.44045 4.48780 4.57337 4.58254 4.67095 4.75512 4.82102 4.85512 4.87604 4.90404 4.95449 4.98303 5.46402 5.60928 5.72039 5.82716 6.21292 6.25089 6.62734 6.70662 6.73046 7.22180 7.47130 8.83464 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.030590 B = 0.003924 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.102576 B = 7133.631892 C = 7326.186528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.401 6.401 3 C 0.090 3.910 4 H 0.095 0.905 5 C 0.023 3.977 6 N -0.522 5.522 7 C 0.044 3.956 8 C 0.496 3.504 9 O -0.577 6.577 10 N -0.611 5.611 11 C 0.076 3.924 12 C 0.226 3.774 13 C -0.537 4.537 14 H 0.026 0.974 15 C 0.008 3.992 16 N -0.947 5.947 17 Si 0.951 3.049 18 H -0.277 1.277 19 H -0.275 1.275 20 H -0.236 1.236 21 C 0.016 3.984 22 C 0.105 3.895 23 H 0.067 0.933 24 O -0.568 6.568 25 H 0.096 0.904 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.121 0.879 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.051 0.949 36 H 0.018 0.982 37 H 0.268 0.732 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.537 5.571 13.382 24.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.320 6.320 3 C 0.031 3.969 4 H 0.113 0.887 5 C -0.105 4.105 6 N -0.248 5.248 7 C -0.087 4.087 8 C 0.284 3.716 9 O -0.457 6.457 10 N -0.343 5.343 11 C -0.066 4.066 12 C 0.103 3.897 13 C -0.576 4.576 14 H 0.045 0.955 15 C -0.189 4.189 16 N -0.587 5.587 17 Si 0.773 3.227 18 H -0.203 1.203 19 H -0.200 1.200 20 H -0.159 1.159 21 C -0.112 4.112 22 C 0.046 3.954 23 H 0.085 0.915 24 O -0.376 6.376 25 H 0.115 0.885 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.139 0.861 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.069 0.931 36 H 0.036 0.964 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -19.305 4.527 13.186 23.813 hybrid contribution 1.171 0.621 0.111 1.330 sum -18.135 5.148 13.297 23.069 Atomic orbital electron populations 1.23026 0.79068 1.04018 1.01096 1.87949 1.21892 1.27201 1.94936 1.22826 0.94237 0.85760 0.94071 0.88728 1.23434 0.87317 1.02563 0.97161 1.64289 1.12526 1.40630 1.07333 1.22196 0.91322 0.95061 1.00134 1.21163 0.91560 0.80004 0.78850 1.90623 1.64348 1.40253 1.50450 1.47974 1.08119 1.32142 1.46062 1.21984 0.94608 0.92102 0.97881 1.19298 0.78772 0.96775 0.94852 1.21593 0.93365 1.28797 1.13799 0.95532 1.25897 1.01195 0.96018 0.95828 1.70059 1.19014 1.40895 1.28732 0.85674 0.78369 0.80196 0.78430 1.20286 1.20012 1.15921 1.23809 1.00521 0.98752 0.88127 1.22586 0.94492 0.96326 0.82045 0.91517 1.86379 1.38270 1.87637 1.25306 0.88518 0.93046 0.92508 0.89824 0.89223 0.86139 0.88460 0.90094 0.91633 0.89233 0.93120 0.96440 0.92288 0.91725 0.90834 0.74946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.85 113.37 1.23 1.57 16 2 O -0.40 -9.26 10.30 -148.98 -1.53 -10.80 16 3 C 0.09 1.91 3.24 31.47 0.10 2.01 16 4 H 0.09 1.70 7.75 -2.39 -0.02 1.68 16 5 C 0.02 0.48 6.49 86.45 0.56 1.04 16 6 N -0.52 -14.97 4.96 -887.56 -4.40 -19.37 16 7 C 0.04 1.18 3.73 85.56 0.32 1.50 16 8 C 0.50 19.89 7.48 87.66 0.66 20.55 16 9 O -0.58 -29.13 14.43 -3.04 -0.04 -29.18 16 10 N -0.61 -24.35 2.86 -851.14 -2.43 -26.79 16 11 C 0.08 2.05 10.24 127.77 1.31 3.36 16 12 C 0.23 10.99 4.23 85.63 0.36 11.35 16 13 C -0.54 -32.03 9.94 25.60 0.25 -31.78 16 14 H 0.03 1.78 8.06 -2.91 -0.02 1.75 16 15 C 0.01 0.50 5.47 84.66 0.46 0.96 16 16 N -0.95 -60.73 13.96 21.45 0.30 -60.43 16 17 Si 0.95 44.78 27.47 68.60 1.88 46.67 16 18 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 19 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 20 H -0.24 -9.88 6.54 99.48 0.65 -9.23 16 21 C 0.02 0.44 5.58 86.65 0.48 0.92 16 22 C 0.11 2.55 4.17 31.80 0.13 2.68 16 23 H 0.07 1.85 8.08 -2.39 -0.02 1.83 16 24 O -0.57 -11.81 13.41 -148.98 -2.00 -13.81 16 25 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.05 0.64 8.11 -2.39 -0.02 0.62 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.08 1.24 7.77 -2.39 -0.02 1.22 16 29 H 0.09 1.97 7.97 -2.38 -0.02 1.95 16 30 H 0.12 2.81 7.37 -2.38 -0.02 2.80 16 31 H 0.10 1.91 7.86 -2.39 -0.02 1.89 16 32 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.06 1.92 8.07 -2.39 -0.02 1.90 16 34 H 0.09 1.84 6.44 -2.39 -0.02 1.82 16 35 H 0.05 2.25 7.13 -2.39 -0.02 2.23 16 36 H 0.02 0.92 6.85 -2.39 -0.02 0.90 16 37 H 0.27 15.95 8.31 -92.70 -0.77 15.18 16 38 H 0.06 1.52 7.85 -2.39 -0.02 1.50 16 39 H 0.07 2.45 6.92 -2.38 -0.02 2.44 16 40 H 0.40 5.33 9.12 -74.06 -0.68 4.66 16 Total: -1.00 -83.09 327.65 -2.05 -85.14 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.30 Total: 14.39 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: 5.87 Total: 14.17 kcal Atomic # 7 Polarization: -100.06 SS G_CDS: -6.53 Total: -106.59 kcal Atomic # 8 Polarization: -50.20 SS G_CDS: -3.58 Total: -53.78 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.88 Total: 46.67 kcal Total: -83.09 -2.05 -85.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395487354.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.224 kcal (2) G-P(sol) polarization free energy of solvation -83.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds