Wall clock time and date at job start Mon Mar 30 2020 04:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00189 * 2 1 4 4 H 1.48502 * 109.47208 * 270.00351 * 3 2 1 5 5 H 1.48505 * 109.47064 * 30.00304 * 3 2 1 6 6 H 1.48501 * 109.47142 * 150.00271 * 3 2 1 7 7 C 1.37877 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00256 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99819 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46863 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99815 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00159 * 359.97438 * 11 10 9 13 13 C 1.50695 * 120.00122 * 179.97438 * 11 10 9 14 14 N 1.46896 * 109.47474 * 179.97438 * 13 11 10 15 15 C 1.46846 * 110.99998 * 294.21414 * 14 13 11 16 16 C 1.53042 * 109.52384 * 174.15789 * 15 14 13 17 17 C 1.53120 * 109.27679 * 59.17688 * 16 15 14 18 18 H 1.09002 * 109.52444 * 62.25092 * 17 16 15 19 19 O 1.42901 * 109.51970 * 182.43834 * 17 16 15 20 20 C 1.53114 * 109.16161 * 302.34397 * 17 16 15 21 21 H 1.09004 * 109.50600 * 297.71890 * 20 17 16 22 22 C 1.53004 * 109.53743 * 177.61381 * 20 17 16 23 23 O 1.42903 * 109.47203 * 175.17751 * 22 20 17 24 24 C 1.46850 * 111.00472 * 170.00002 * 14 13 11 25 25 H 0.97003 * 119.99772 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47152 * 59.99540 * 9 7 2 27 27 H 1.09004 * 109.46834 * 299.99583 * 9 7 2 28 28 H 0.97001 * 120.00412 * 359.97438 * 10 9 7 29 29 H 1.09002 * 109.47120 * 59.99722 * 13 11 10 30 30 H 1.09004 * 109.46990 * 299.99968 * 13 11 10 31 31 H 1.08993 * 109.46639 * 54.13954 * 15 14 13 32 32 H 1.09010 * 109.45973 * 294.17120 * 15 14 13 33 33 H 1.08998 * 109.50041 * 299.23667 * 16 15 14 34 34 H 1.08998 * 109.53568 * 179.13417 * 16 15 14 35 35 H 0.96692 * 114.00119 * 299.68445 * 19 17 16 36 36 H 1.08997 * 109.47471 * 295.18265 * 22 20 17 37 37 H 1.08999 * 109.46770 * 55.18136 * 22 20 17 38 38 H 0.96698 * 113.99601 * 180.02562 * 23 22 20 39 39 H 1.08995 * 109.45831 * 65.81919 * 24 14 13 40 40 H 1.08998 * 109.45719 * 305.85769 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6127 -0.0015 11 6 1.7537 -4.8834 -0.0019 12 8 0.5613 -5.1050 -0.0019 13 6 2.7330 -6.0288 -0.0022 14 7 1.9985 -7.3010 -0.0020 15 6 1.2489 -7.4756 1.2486 16 6 0.3845 -8.7351 1.1551 17 6 1.2844 -9.9483 0.9039 18 1 1.9664 -10.0762 1.7444 19 8 0.4780 -11.1191 0.7592 20 6 2.0895 -9.7198 -0.3783 21 1 1.4086 -9.6306 -1.2247 22 6 3.0354 -10.9007 -0.6057 23 8 3.7042 -10.7410 -1.8585 24 6 2.9045 -8.4318 -0.2403 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5563 -0.8919 27 1 0.6240 -2.5575 0.8881 28 1 3.1567 -3.4354 -0.0010 29 1 3.3597 -5.9713 0.8878 30 1 3.3596 -5.9708 -0.8922 31 1 0.6099 -6.6081 1.4132 32 1 1.9472 -7.5752 2.0797 33 1 -0.3233 -8.6305 0.3328 34 1 -0.1603 -8.8734 2.0890 35 1 -0.0601 -11.3245 1.5358 36 1 3.7716 -10.9365 0.1972 37 1 2.4628 -11.8282 -0.6153 38 1 4.3210 -11.4553 -2.0689 39 1 3.5950 -8.5268 0.5976 40 1 3.4680 -8.2586 -1.1572 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396865148.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:49 Heat of formation + Delta-G solvation = -139.359618 kcal Electronic energy + Delta-G solvation = -21288.515498 eV Core-core repulsion = 17909.886770 eV Total energy + Delta-G solvation = -3378.628729 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.94069 -38.56929 -36.77129 -36.30840 -34.12433 -32.52373 -32.26363 -31.33509 -28.22365 -26.39030 -25.60329 -23.27868 -22.44448 -21.60385 -19.99983 -19.59294 -17.59825 -17.50705 -17.04899 -16.11002 -15.70939 -15.35529 -15.04860 -14.94961 -14.54181 -14.34691 -14.06230 -13.79820 -13.52287 -13.19506 -12.77840 -12.54428 -12.30557 -12.02718 -11.85732 -11.54251 -11.23079 -11.18820 -11.08345 -10.95775 -10.85397 -10.50950 -10.30310 -10.15763 -9.96838 -9.38623 -8.97145 -8.72075 -8.20015 -7.83451 -6.15911 -4.22792 3.24623 3.30555 3.32836 3.40668 3.62630 3.88559 4.01338 4.26006 4.43411 4.63359 4.79447 4.82848 5.01626 5.13745 5.19763 5.20146 5.26188 5.34081 5.39544 5.53993 5.57249 5.61846 5.65142 5.73691 5.88258 6.06995 6.17927 6.28099 7.00301 7.15119 7.34202 7.39340 7.42380 7.47272 7.53736 7.68918 7.98304 8.65560 8.80336 9.14695 9.44062 10.94285 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.038767 B = 0.003234 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.087097 B = 8654.733349 C = 9156.068108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.715 5.715 11 C 0.499 3.501 12 O -0.539 6.539 13 C 0.037 3.963 14 N -0.520 5.520 15 C 0.051 3.949 16 C -0.143 4.143 17 C 0.110 3.890 18 H 0.052 0.948 19 O -0.567 6.567 20 C -0.075 4.075 21 H 0.095 0.905 22 C 0.085 3.915 23 O -0.572 6.572 24 C 0.067 3.933 25 H 0.266 0.734 26 H 0.027 0.973 27 H 0.026 0.974 28 H 0.389 0.611 29 H 0.057 0.943 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.025 0.975 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.378 0.622 36 H 0.041 0.959 37 H 0.056 0.944 38 H 0.377 0.623 39 H 0.030 0.970 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.855 -21.451 3.031 23.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.364 5.364 11 C 0.282 3.718 12 O -0.417 6.417 13 C -0.095 4.095 14 N -0.245 5.245 15 C -0.076 4.076 16 C -0.181 4.181 17 C 0.051 3.949 18 H 0.069 0.931 19 O -0.373 6.373 20 C -0.094 4.094 21 H 0.114 0.886 22 C 0.007 3.993 23 O -0.377 6.377 24 C -0.061 4.061 25 H 0.075 0.925 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.222 0.778 29 H 0.075 0.925 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.043 0.957 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.225 0.775 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.224 0.776 39 H 0.048 0.952 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.392 -20.891 2.054 21.943 hybrid contribution 1.568 0.565 1.290 2.107 sum 7.960 -20.326 3.343 22.083 Atomic orbital electron populations 1.69978 1.06105 1.27278 1.48926 1.24956 0.94914 0.99448 0.94726 0.86417 0.79597 0.82664 0.78235 1.20445 1.21022 1.19771 1.21236 0.93257 0.90498 1.53164 0.91924 1.19081 0.88282 0.81902 0.97686 1.46456 1.11067 1.06097 1.72800 1.20293 0.89566 0.84076 0.77815 1.90624 1.16663 1.84505 1.49870 1.21988 0.95440 0.89397 1.02637 1.61507 1.26460 1.00448 1.36040 1.22236 0.96846 0.99705 0.88845 1.22246 0.98956 0.94028 1.02906 1.21835 0.91623 0.84829 0.96586 0.93056 1.86499 1.61185 1.45365 1.44209 1.21105 0.96583 0.93389 0.98320 0.88629 1.22136 0.94065 0.98006 0.85130 1.86504 1.61257 1.51146 1.38760 1.22069 0.93344 0.89338 1.01306 0.92457 0.95521 0.95647 0.77827 0.92489 0.88176 0.87770 0.95654 0.89716 0.91197 0.77526 0.94118 0.92538 0.77613 0.95154 0.89293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.54 -14.78 9.28 -34.44 -0.32 -15.10 16 8 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 9 C 0.25 6.69 5.43 -5.19 -0.03 6.66 16 10 N -0.72 -15.04 5.55 -61.47 -0.34 -15.38 16 11 C 0.50 9.97 7.50 -10.99 -0.08 9.89 16 12 O -0.54 -12.90 14.33 5.56 0.08 -12.82 16 13 C 0.04 0.54 5.45 -4.98 -0.03 0.51 16 14 N -0.52 -7.66 4.40 -236.12 -1.04 -8.70 16 15 C 0.05 0.72 5.10 -3.83 -0.02 0.70 16 16 C -0.14 -1.70 5.72 -26.65 -0.15 -1.85 16 17 C 0.11 1.14 2.95 -26.61 -0.08 1.06 16 18 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 19 O -0.57 -5.52 12.68 -35.23 -0.45 -5.96 16 20 C -0.08 -0.87 2.31 -90.54 -0.21 -1.08 16 21 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 22 C 0.08 0.80 6.37 37.16 0.24 1.04 16 23 O -0.57 -5.58 13.21 -35.23 -0.47 -6.04 16 24 C 0.07 0.81 4.63 -3.83 -0.02 0.79 16 25 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.39 6.97 8.32 -40.82 -0.34 6.63 16 29 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 30 H 0.10 1.29 7.99 -51.93 -0.41 0.88 16 31 H 0.10 1.81 5.78 -51.93 -0.30 1.51 16 32 H 0.03 0.32 8.14 -51.92 -0.42 -0.10 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.38 2.10 9.09 45.56 0.41 2.52 16 36 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.53 7.63 -51.93 -0.40 0.14 16 38 H 0.38 1.86 9.12 45.56 0.42 2.27 16 39 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.09 1.09 7.72 -51.93 -0.40 0.69 16 LS Contribution 327.46 15.07 4.93 4.93 Total: -1.00 -34.42 327.46 -7.14 -41.56 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -4.78 Total: 7.73 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -0.80 Total: 4.29 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: -0.64 Total: -49.54 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.83 Total: -24.83 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.42 -7.14 -41.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396865148.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.800 kcal (2) G-P(sol) polarization free energy of solvation -34.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds