Wall clock time and date at job start Mon Mar 30 2020 04:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00189 * 2 1 4 4 H 1.48502 * 109.47208 * 270.00351 * 3 2 1 5 5 H 1.48505 * 109.47064 * 30.00304 * 3 2 1 6 6 H 1.48501 * 109.47142 * 150.00271 * 3 2 1 7 7 C 1.37877 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00256 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99819 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46863 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99815 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00159 * 359.97438 * 11 10 9 13 13 C 1.50695 * 120.00122 * 179.97438 * 11 10 9 14 14 N 1.46896 * 109.47474 * 179.97438 * 13 11 10 15 15 C 1.46846 * 110.99998 * 294.21414 * 14 13 11 16 16 C 1.53042 * 109.52384 * 174.15789 * 15 14 13 17 17 C 1.53120 * 109.27679 * 59.17688 * 16 15 14 18 18 H 1.09002 * 109.52444 * 62.25092 * 17 16 15 19 19 O 1.42901 * 109.51970 * 182.43834 * 17 16 15 20 20 C 1.53114 * 109.16161 * 302.34397 * 17 16 15 21 21 H 1.09004 * 109.50600 * 297.71890 * 20 17 16 22 22 C 1.53004 * 109.53743 * 177.61381 * 20 17 16 23 23 O 1.42903 * 109.47203 * 175.17751 * 22 20 17 24 24 C 1.46850 * 111.00472 * 170.00002 * 14 13 11 25 25 H 0.97003 * 119.99772 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47152 * 59.99540 * 9 7 2 27 27 H 1.09004 * 109.46834 * 299.99583 * 9 7 2 28 28 H 0.97001 * 120.00412 * 359.97438 * 10 9 7 29 29 H 1.09002 * 109.47120 * 59.99722 * 13 11 10 30 30 H 1.09004 * 109.46990 * 299.99968 * 13 11 10 31 31 H 1.08993 * 109.46639 * 54.13954 * 15 14 13 32 32 H 1.09010 * 109.45973 * 294.17120 * 15 14 13 33 33 H 1.08998 * 109.50041 * 299.23667 * 16 15 14 34 34 H 1.08998 * 109.53568 * 179.13417 * 16 15 14 35 35 H 0.96692 * 114.00119 * 299.68445 * 19 17 16 36 36 H 1.08997 * 109.47471 * 295.18265 * 22 20 17 37 37 H 1.08999 * 109.46770 * 55.18136 * 22 20 17 38 38 H 0.96698 * 113.99601 * 180.02562 * 23 22 20 39 39 H 1.08995 * 109.45831 * 65.81919 * 24 14 13 40 40 H 1.08998 * 109.45719 * 305.85769 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6127 -0.0015 11 6 1.7537 -4.8834 -0.0019 12 8 0.5613 -5.1050 -0.0019 13 6 2.7330 -6.0288 -0.0022 14 7 1.9985 -7.3010 -0.0020 15 6 1.2489 -7.4756 1.2486 16 6 0.3845 -8.7351 1.1551 17 6 1.2844 -9.9483 0.9039 18 1 1.9664 -10.0762 1.7444 19 8 0.4780 -11.1191 0.7592 20 6 2.0895 -9.7198 -0.3783 21 1 1.4086 -9.6306 -1.2247 22 6 3.0354 -10.9007 -0.6057 23 8 3.7042 -10.7410 -1.8585 24 6 2.9045 -8.4318 -0.2403 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5563 -0.8919 27 1 0.6240 -2.5575 0.8881 28 1 3.1567 -3.4354 -0.0010 29 1 3.3597 -5.9713 0.8878 30 1 3.3596 -5.9708 -0.8922 31 1 0.6099 -6.6081 1.4132 32 1 1.9472 -7.5752 2.0797 33 1 -0.3233 -8.6305 0.3328 34 1 -0.1603 -8.8734 2.0890 35 1 -0.0601 -11.3245 1.5358 36 1 3.7716 -10.9365 0.1972 37 1 2.4628 -11.8282 -0.6153 38 1 4.3210 -11.4553 -2.0689 39 1 3.5950 -8.5268 0.5976 40 1 3.4680 -8.2586 -1.1572 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396865148.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:48 Heat of formation + Delta-G solvation = -171.834028 kcal Electronic energy + Delta-G solvation = -21289.923695 eV Core-core repulsion = 17909.886770 eV Total energy + Delta-G solvation = -3380.036925 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.09547 -39.95300 -37.52496 -37.28918 -36.05985 -34.35171 -33.41749 -32.30501 -29.93778 -27.89343 -26.51718 -24.79224 -23.77748 -22.75940 -21.28970 -20.89895 -18.91854 -18.31958 -18.22359 -17.57545 -17.25041 -16.68383 -16.52864 -16.12817 -15.90372 -15.41178 -15.29976 -14.94512 -14.62346 -14.32178 -14.19258 -13.96867 -13.83516 -13.56354 -13.05715 -12.91185 -12.78278 -12.62160 -12.28171 -12.21900 -12.18359 -11.90973 -11.48593 -11.39338 -10.90615 -10.84022 -10.79685 -10.52960 -9.79853 -9.26643 -8.29053 -6.45800 1.43110 1.45716 1.56838 1.80299 2.26197 2.45164 2.99738 3.05794 3.20342 3.31170 3.74108 3.92262 3.99795 4.00864 4.16870 4.24680 4.30735 4.39807 4.44420 4.53076 4.56645 4.63429 4.79173 4.88087 4.98264 5.06799 5.11808 5.13839 5.24822 5.32864 5.49842 5.70993 5.85250 5.96271 6.14051 6.65680 6.87098 6.95953 6.96596 7.23972 7.54374 8.83197 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.038767 B = 0.003234 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.087097 B = 8654.733349 C = 9156.068108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.986 3.014 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.254 1.254 7 C -0.556 4.556 8 H 0.085 0.915 9 C 0.269 3.731 10 N -0.710 5.710 11 C 0.494 3.506 12 O -0.585 6.585 13 C 0.051 3.949 14 N -0.547 5.547 15 C 0.053 3.947 16 C -0.139 4.139 17 C 0.120 3.880 18 H 0.078 0.922 19 O -0.578 6.578 20 C -0.079 4.079 21 H 0.059 0.941 22 C 0.092 3.908 23 O -0.592 6.592 24 C 0.074 3.926 25 H 0.268 0.732 26 H -0.016 1.016 27 H -0.013 1.013 28 H 0.408 0.592 29 H 0.090 0.910 30 H 0.125 0.875 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.090 0.910 35 H 0.396 0.604 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.397 0.603 39 H 0.055 0.945 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.015 -22.355 3.886 25.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.593 4.593 8 H 0.103 0.897 9 C 0.146 3.854 10 N -0.360 5.360 11 C 0.280 3.720 12 O -0.465 6.465 13 C -0.080 4.080 14 N -0.273 5.273 15 C -0.075 4.075 16 C -0.178 4.178 17 C 0.061 3.939 18 H 0.096 0.904 19 O -0.387 6.387 20 C -0.099 4.099 21 H 0.077 0.923 22 C 0.014 3.986 23 O -0.401 6.401 24 C -0.053 4.053 25 H 0.077 0.923 26 H 0.002 0.998 27 H 0.005 0.995 28 H 0.244 0.756 29 H 0.108 0.892 30 H 0.143 0.857 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.246 0.754 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.247 0.753 39 H 0.073 0.927 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.605 -21.852 2.914 24.047 hybrid contribution 0.505 0.757 1.002 1.354 sum 10.110 -21.094 3.915 23.717 Atomic orbital electron populations 1.70146 1.08323 1.28543 1.50039 1.26089 0.95778 1.03978 0.93872 0.85145 0.78517 0.76896 0.78578 1.19672 1.20987 1.17774 1.21636 0.94341 0.90577 1.52797 0.89733 1.18496 0.88684 0.84375 0.93885 1.46184 1.11156 1.05473 1.73235 1.21359 0.90007 0.84774 0.75815 1.90613 1.19281 1.85181 1.51445 1.21911 0.93837 0.87017 1.05240 1.61431 1.27807 1.01250 1.36777 1.22128 0.96945 0.98895 0.89513 1.22219 0.98608 0.94247 1.02689 1.21701 0.91444 0.84017 0.96700 0.90437 1.86467 1.61614 1.44767 1.45827 1.21123 0.96692 0.94362 0.97686 0.92256 1.22048 0.94170 0.96631 0.85774 1.86454 1.61973 1.52606 1.39058 1.22054 0.93079 0.88182 1.02035 0.92278 0.99824 0.99540 0.75622 0.89237 0.85749 0.91940 0.93326 0.92982 0.89155 0.75389 0.91752 0.92630 0.75267 0.92665 0.89593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.83 13.29 21.45 0.28 -56.54 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.99 42.48 29.54 68.60 2.03 44.51 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 7 C -0.56 -30.44 9.28 25.60 0.24 -30.20 16 8 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 9 C 0.27 14.96 5.43 85.63 0.46 15.42 16 10 N -0.71 -30.21 5.55 -466.78 -2.59 -32.80 16 11 C 0.49 20.07 7.50 87.65 0.66 20.73 16 12 O -0.58 -29.58 14.33 -3.03 -0.04 -29.62 16 13 C 0.05 1.40 5.45 85.56 0.47 1.87 16 14 N -0.55 -15.60 4.40 -900.94 -3.96 -19.56 16 15 C 0.05 1.46 5.10 86.33 0.44 1.90 16 16 C -0.14 -3.24 5.72 30.65 0.18 -3.07 16 17 C 0.12 2.23 2.95 30.67 0.09 2.32 16 18 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 19 O -0.58 -10.18 12.68 -148.98 -1.89 -12.07 16 20 C -0.08 -1.71 2.31 -10.74 -0.02 -1.74 16 21 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 22 C 0.09 1.50 6.37 71.98 0.46 1.96 16 23 O -0.59 -10.31 13.21 -148.98 -1.97 -12.28 16 24 C 0.07 1.59 4.63 86.32 0.40 1.99 16 25 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 26 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 27 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 28 H 0.41 14.13 8.32 -92.71 -0.77 13.35 16 29 H 0.09 1.95 8.12 -2.39 -0.02 1.93 16 30 H 0.12 2.87 7.99 -2.39 -0.02 2.85 16 31 H 0.06 2.27 5.78 -2.39 -0.01 2.25 16 32 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.40 3.53 9.09 -74.06 -0.67 2.85 16 36 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.06 0.92 7.63 -2.39 -0.02 0.90 16 38 H 0.40 2.96 9.12 -74.06 -0.68 2.28 16 39 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.09 1.91 7.72 -2.39 -0.02 1.90 16 Total: -1.00 -78.99 327.46 -5.37 -84.35 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: -1.06 Total: 22.24 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: 3.83 Total: 11.77 kcal Atomic # 7 Polarization: -102.63 SS G_CDS: -6.27 Total: -108.90 kcal Atomic # 8 Polarization: -50.07 SS G_CDS: -3.90 Total: -53.97 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -78.99 -5.37 -84.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396865148.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.479 kcal (2) G-P(sol) polarization free energy of solvation -78.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds