Wall clock time and date at job start Mon Mar 30 2020 04:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99951 * 2 1 4 4 H 1.48501 * 109.47571 * 270.00352 * 3 2 1 5 5 H 1.48503 * 109.47257 * 30.00301 * 3 2 1 6 6 H 1.48500 * 109.46984 * 150.00245 * 3 2 1 7 7 C 1.37879 * 120.00195 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99859 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99822 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47107 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00074 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99891 * 0.02562 * 11 10 9 13 13 C 1.50694 * 119.99840 * 180.02562 * 11 10 9 14 14 N 1.46905 * 109.46939 * 180.02562 * 13 11 10 15 15 C 1.46851 * 111.00244 * 66.04420 * 14 13 11 16 16 C 1.53035 * 109.52351 * 185.84004 * 15 14 13 17 17 C 1.53113 * 109.27734 * 300.81978 * 16 15 14 18 18 H 1.08999 * 109.52914 * 297.74859 * 17 16 15 19 19 O 1.42905 * 109.52087 * 177.56183 * 17 16 15 20 20 C 1.53119 * 109.16087 * 57.66030 * 17 16 15 21 21 H 1.08993 * 109.50701 * 62.32148 * 20 17 16 22 22 C 1.53006 * 109.50154 * 182.40228 * 20 17 16 23 23 O 1.42897 * 109.46881 * 184.99670 * 22 20 17 24 24 C 1.46842 * 111.00295 * 190.25558 * 14 13 11 25 25 H 0.97003 * 120.00018 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46574 * 60.00186 * 9 7 2 27 27 H 1.08998 * 109.47278 * 300.00220 * 9 7 2 28 28 H 0.97003 * 119.99783 * 0.02562 * 10 9 7 29 29 H 1.08991 * 109.47252 * 60.00454 * 13 11 10 30 30 H 1.09003 * 109.47216 * 299.99502 * 13 11 10 31 31 H 1.09002 * 109.45716 * 65.82355 * 15 14 13 32 32 H 1.08998 * 109.46048 * 305.86106 * 15 14 13 33 33 H 1.09005 * 109.50046 * 180.88323 * 16 15 14 34 34 H 1.08997 * 109.53619 * 60.78727 * 16 15 14 35 35 H 0.96700 * 114.00284 * 60.32117 * 19 17 16 36 36 H 1.08992 * 109.47046 * 304.99568 * 22 20 17 37 37 H 1.08997 * 109.47395 * 65.00108 * 22 20 17 38 38 H 0.96703 * 114.00257 * 180.02562 * 23 22 20 39 39 H 1.09002 * 109.45960 * 54.14438 * 24 14 13 40 40 H 1.09004 * 109.46125 * 294.18129 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0018 11 6 1.7539 -4.8834 -0.0025 12 8 0.5615 -5.1050 -0.0026 13 6 2.7332 -6.0287 -0.0032 14 7 1.9987 -7.3009 -0.0046 15 6 1.2539 -7.4773 -1.2578 16 6 0.3892 -8.7367 -1.1660 17 6 1.2881 -9.9494 -0.9097 18 1 1.9734 -10.0786 -1.7474 19 8 0.4812 -11.1201 -0.7665 20 6 2.0883 -9.7192 0.3753 21 1 1.4041 -9.6297 1.2190 22 6 3.0333 -10.9001 0.6070 23 8 3.6945 -10.7414 1.8638 24 6 2.9037 -8.4314 0.2388 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5566 -0.8904 27 1 0.6248 -2.5571 0.8896 28 1 3.1568 -3.4354 -0.0021 29 1 3.3598 -5.9715 0.8868 30 1 3.3598 -5.9705 -0.8932 31 1 1.9554 -7.5780 -2.0860 32 1 0.6156 -6.6100 -1.4261 33 1 -0.1515 -8.8759 -2.1022 34 1 -0.3223 -8.6314 -0.3470 35 1 -0.0539 -11.3267 -1.5450 36 1 2.4611 -11.8277 0.6121 37 1 3.7743 -10.9345 -0.1915 38 1 4.3110 -11.4554 2.0768 39 1 3.4637 -8.2570 1.1576 40 1 3.5975 -8.5276 -0.5964 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396865152.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:51 Heat of formation + Delta-G solvation = -171.899952 kcal Electronic energy + Delta-G solvation = -21289.013155 eV Core-core repulsion = 17908.973372 eV Total energy + Delta-G solvation = -3380.039783 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.09378 -39.95367 -37.52546 -37.28866 -36.05949 -34.35088 -33.41751 -32.30623 -29.93794 -27.89353 -26.51696 -24.79213 -23.77752 -22.75923 -21.28871 -20.89942 -18.91890 -18.31964 -18.22331 -17.57529 -17.25055 -16.68468 -16.52895 -16.12682 -15.90164 -15.41233 -15.29926 -14.94536 -14.62287 -14.32293 -14.19163 -13.96851 -13.83414 -13.56372 -13.05260 -12.92271 -12.76640 -12.63130 -12.28537 -12.21793 -12.18342 -11.90992 -11.48713 -11.39176 -10.90528 -10.83994 -10.79630 -10.53259 -9.79831 -9.26626 -8.29045 -6.45798 1.43071 1.45649 1.56953 1.80430 2.26217 2.45164 2.99775 3.05769 3.20359 3.31227 3.74039 3.92327 3.99725 4.00897 4.16904 4.24626 4.30722 4.39799 4.44403 4.53087 4.56651 4.63345 4.79151 4.88043 4.98187 5.06693 5.11815 5.13821 5.24829 5.32885 5.49868 5.70984 5.85260 5.96248 6.14045 6.65707 6.87077 6.96023 6.96639 7.23973 7.54457 8.83197 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.038755 B = 0.003234 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.304938 B = 8656.389907 C = 9156.067729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.986 3.014 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.255 1.255 7 C -0.556 4.556 8 H 0.085 0.915 9 C 0.269 3.731 10 N -0.710 5.710 11 C 0.494 3.506 12 O -0.585 6.585 13 C 0.051 3.949 14 N -0.547 5.547 15 C 0.053 3.947 16 C -0.140 4.140 17 C 0.120 3.880 18 H 0.078 0.922 19 O -0.578 6.578 20 C -0.079 4.079 21 H 0.059 0.941 22 C 0.092 3.908 23 O -0.592 6.592 24 C 0.074 3.926 25 H 0.268 0.732 26 H -0.014 1.014 27 H -0.016 1.016 28 H 0.408 0.592 29 H 0.125 0.875 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.051 0.949 35 H 0.396 0.604 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.397 0.603 39 H 0.086 0.914 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.038 -22.361 -3.881 25.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.179 1.179 7 C -0.593 4.593 8 H 0.103 0.897 9 C 0.146 3.854 10 N -0.361 5.361 11 C 0.280 3.720 12 O -0.465 6.465 13 C -0.080 4.080 14 N -0.273 5.273 15 C -0.075 4.075 16 C -0.178 4.178 17 C 0.061 3.939 18 H 0.096 0.904 19 O -0.387 6.387 20 C -0.099 4.099 21 H 0.077 0.923 22 C 0.014 3.986 23 O -0.401 6.401 24 C -0.053 4.053 25 H 0.077 0.923 26 H 0.004 0.996 27 H 0.002 0.998 28 H 0.244 0.756 29 H 0.142 0.858 30 H 0.108 0.892 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.108 0.892 34 H 0.070 0.930 35 H 0.246 0.754 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.247 0.753 39 H 0.104 0.896 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.623 -21.857 -2.902 24.057 hybrid contribution 0.508 0.757 -1.025 1.372 sum 10.131 -21.100 -3.927 23.733 Atomic orbital electron populations 1.70147 1.08323 1.28545 1.50040 1.26091 0.95777 1.03980 0.93871 0.85144 0.78489 0.76887 0.78612 1.19526 1.21051 1.17855 1.21634 0.94341 0.90577 1.52796 0.89732 1.18495 0.88685 0.84377 0.93882 1.46184 1.11155 1.05474 1.73240 1.21359 0.90008 0.84772 0.75816 1.90613 1.19282 1.85187 1.51443 1.21911 0.93830 0.87018 1.05244 1.61431 1.28038 1.01254 1.36550 1.22123 0.96973 0.98868 0.89487 1.22217 0.98611 0.94252 1.02685 1.21702 0.91459 0.84019 0.96684 0.90427 1.86469 1.61778 1.44785 1.45647 1.21123 0.96723 0.94361 0.97656 0.92260 1.22049 0.94270 0.96638 0.85670 1.86454 1.62266 1.52697 1.38681 1.22055 0.93079 0.88187 1.02029 0.92278 0.99561 0.99811 0.75623 0.85753 0.89223 0.93299 0.91980 0.89154 0.92983 0.75387 0.92628 0.91748 0.75266 0.89602 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.84 13.29 21.45 0.28 -56.55 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.99 42.49 29.54 68.60 2.03 44.52 16 4 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 6 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 7 C -0.56 -30.44 9.28 25.60 0.24 -30.21 16 8 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 9 C 0.27 14.96 5.43 85.63 0.46 15.42 16 10 N -0.71 -30.22 5.55 -466.79 -2.59 -32.81 16 11 C 0.49 20.08 7.50 87.66 0.66 20.73 16 12 O -0.58 -29.60 14.35 -3.02 -0.04 -29.64 16 13 C 0.05 1.40 5.45 85.55 0.47 1.87 16 14 N -0.55 -15.59 4.39 -900.94 -3.96 -19.55 16 15 C 0.05 1.47 5.11 86.32 0.44 1.91 16 16 C -0.14 -3.24 5.72 30.64 0.18 -3.06 16 17 C 0.12 2.22 2.95 30.67 0.09 2.32 16 18 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 19 O -0.58 -10.18 12.68 -148.98 -1.89 -12.07 16 20 C -0.08 -1.71 2.32 -10.74 -0.02 -1.74 16 21 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 22 C 0.09 1.50 6.37 71.98 0.46 1.96 16 23 O -0.59 -10.32 13.22 -148.98 -1.97 -12.29 16 24 C 0.07 1.59 4.63 86.33 0.40 1.99 16 25 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 26 H -0.01 -0.85 8.14 -2.38 -0.02 -0.87 16 27 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 28 H 0.41 14.13 8.32 -92.71 -0.77 13.36 16 29 H 0.12 2.87 7.98 -2.39 -0.02 2.85 16 30 H 0.09 1.95 8.12 -2.39 -0.02 1.93 16 31 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.06 2.25 5.80 -2.39 -0.01 2.23 16 33 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.40 3.52 9.09 -74.06 -0.67 2.85 16 36 H 0.06 0.92 7.62 -2.39 -0.02 0.90 16 37 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.40 2.96 9.12 -74.06 -0.68 2.29 16 39 H 0.09 1.91 7.72 -2.39 -0.02 1.89 16 40 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -79.04 327.50 -5.36 -84.41 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: -1.06 Total: 22.21 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: 3.83 Total: 11.78 kcal Atomic # 7 Polarization: -102.65 SS G_CDS: -6.26 Total: -108.91 kcal Atomic # 8 Polarization: -50.10 SS G_CDS: -3.90 Total: -54.00 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -79.04 -5.36 -84.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396865152.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.493 kcal (2) G-P(sol) polarization free energy of solvation -79.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds