Wall clock time and date at job start Mon Mar 30 2020 05:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48494 * 109.47225 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00450 * 3 2 1 6 6 H 1.48498 * 109.47306 * 239.99734 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47509 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99998 * 179.97438 * 10 9 7 12 12 H 1.09000 * 115.51885 * 9.57369 * 11 10 9 13 13 C 1.53001 * 117.44186 * 224.22666 * 11 10 9 14 14 H 1.08998 * 119.52534 * 4.09136 * 13 11 10 15 15 C 1.54378 * 118.12813 * 160.68672 * 13 11 10 16 16 N 1.48565 * 104.59516 * 87.22617 * 15 13 11 17 17 C 1.46897 * 111.00128 * 200.95877 * 16 15 13 18 18 C 1.50699 * 109.47295 * 285.42382 * 17 16 15 19 19 C 1.38234 * 119.99800 * 269.72412 * 18 17 16 20 20 C 1.38236 * 120.00193 * 179.76451 * 19 18 17 21 21 C 1.38238 * 119.99537 * 0.50783 * 20 19 18 22 22 C 1.38225 * 120.00028 * 359.74490 * 21 20 19 23 23 C 1.38231 * 120.00453 * 0.02562 * 22 21 20 24 24 C 1.48559 * 104.22337 * 320.51735 * 16 15 13 25 25 C 1.53002 * 117.44400 * 154.99595 * 11 10 9 26 26 H 1.09000 * 119.52487 * 354.35722 * 25 11 10 27 27 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 29 29 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 30 30 H 1.00891 * 111.00233 * 56.04330 * 10 9 7 31 31 H 1.09004 * 110.40989 * 328.45198 * 15 13 11 32 32 H 1.08999 * 110.41373 * 206.00608 * 15 13 11 33 33 H 1.09007 * 109.46779 * 45.41815 * 17 16 15 34 34 H 1.08996 * 109.47473 * 165.41741 * 17 16 15 35 35 H 1.08003 * 119.99855 * 359.97438 * 19 18 17 36 36 H 1.07999 * 120.00291 * 180.23238 * 20 19 18 37 37 H 1.07997 * 119.99485 * 179.72714 * 21 20 19 38 38 H 1.08007 * 119.99963 * 179.97438 * 22 21 20 39 39 H 1.08000 * 120.00172 * 179.97438 * 23 22 21 40 40 H 1.09003 * 110.40893 * 280.70805 * 24 16 15 41 41 H 1.08997 * 110.51054 * 158.31041 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6966 -1.2124 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 7 2.2058 -3.6156 0.0180 11 6 1.5056 -4.9070 0.0253 12 1 0.4290 -4.8583 -0.1382 13 6 2.0251 -5.9855 0.9781 14 1 2.8410 -5.7506 1.6616 15 6 1.0796 -7.1494 1.3449 16 7 1.2925 -8.1565 0.2737 17 6 0.1524 -9.0785 0.1838 18 6 0.1950 -10.0443 1.3398 19 6 0.8709 -11.2435 1.2139 20 6 0.9141 -12.1274 2.2759 21 6 0.2725 -11.8166 3.4603 22 6 -0.4078 -10.6197 3.5844 23 6 -0.4470 -9.7337 2.5240 24 6 1.4230 -7.3486 -0.9662 25 6 2.2510 -6.1165 -0.5423 26 1 3.2238 -5.9755 -1.0133 27 1 -0.4850 -0.8401 -0.0004 28 1 0.6248 -2.5524 0.9029 29 1 0.6241 -2.5613 -0.8770 30 1 2.8407 -3.5445 0.7989 31 1 0.0435 -6.8109 1.3479 32 1 1.3475 -7.5651 2.3162 33 1 -0.7775 -8.5108 0.2187 34 1 0.2055 -9.6315 -0.7539 35 1 1.3681 -11.4885 0.2870 36 1 1.4453 -13.0627 2.1789 37 1 0.3025 -12.5090 4.2885 38 1 -0.9094 -10.3770 4.5096 39 1 -0.9788 -8.7988 2.6209 40 1 0.4405 -7.0413 -1.3247 41 1 1.9485 -7.9131 -1.7363 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398278947.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:01 Heat of formation + Delta-G solvation = 59.823900 kcal Electronic energy + Delta-G solvation = -19765.350211 eV Core-core repulsion = 16838.500742 eV Total energy + Delta-G solvation = -2926.849469 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.15418 -39.07911 -35.75950 -33.85345 -32.13297 -31.09184 -30.61934 -28.37323 -26.75028 -25.26997 -22.80877 -22.62859 -21.77146 -20.98713 -20.42217 -19.95512 -17.00980 -16.87767 -16.26732 -15.59674 -15.38888 -15.07572 -14.28764 -14.02151 -13.89525 -13.67541 -13.59454 -13.11743 -13.02902 -12.88269 -12.52975 -12.18632 -11.92334 -11.68822 -11.38548 -11.30905 -11.11410 -10.98027 -10.82758 -10.66450 -10.14583 -10.10101 -9.74906 -9.09955 -8.96375 -8.67171 -8.49695 -8.45031 -7.42678 -6.42844 -4.12378 1.14296 1.22413 3.42839 3.45247 3.50329 3.63860 3.88941 4.05526 4.39291 4.53695 4.57467 4.66407 4.81141 4.88667 4.95870 5.07504 5.15109 5.23516 5.30564 5.33598 5.36611 5.43733 5.45780 5.53437 5.57542 5.67602 5.80529 5.85237 5.92332 5.97921 6.25818 6.28898 6.31688 6.42086 6.42627 6.69463 6.80351 6.85972 6.92024 7.06607 7.68671 8.05005 8.34311 8.50569 8.80717 9.59387 10.97117 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.040396 B = 0.002845 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.967345 B = 9839.650781 C =10130.438398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.016 3.984 3 Si 1.074 2.926 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.286 1.286 7 C -0.598 4.598 8 H 0.057 0.943 9 C 0.186 3.814 10 N -0.649 5.649 11 C 0.071 3.929 12 H 0.095 0.905 13 C -0.195 4.195 14 H 0.113 0.887 15 C 0.067 3.933 16 N -0.504 5.504 17 C 0.080 3.920 18 C -0.072 4.072 19 C -0.100 4.100 20 C -0.123 4.123 21 C -0.124 4.124 22 C -0.121 4.121 23 C -0.113 4.113 24 C 0.063 3.937 25 C -0.159 4.159 26 H 0.117 0.883 27 H 0.267 0.733 28 H -0.020 1.020 29 H 0.020 0.980 30 H 0.337 0.663 31 H 0.043 0.957 32 H 0.082 0.918 33 H 0.046 0.954 34 H 0.083 0.917 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.045 0.955 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.308 -23.420 4.006 23.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.188 4.188 3 Si 0.902 3.098 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.637 4.637 8 H 0.075 0.925 9 C 0.059 3.941 10 N -0.277 5.277 11 C -0.042 4.042 12 H 0.113 0.887 13 C -0.216 4.216 14 H 0.131 0.869 15 C -0.060 4.060 16 N -0.228 5.228 17 C -0.048 4.048 18 C -0.072 4.072 19 C -0.119 4.119 20 C -0.141 4.141 21 C -0.142 4.142 22 C -0.139 4.139 23 C -0.132 4.132 24 C -0.064 4.064 25 C -0.180 4.180 26 H 0.135 0.865 27 H 0.077 0.923 28 H -0.003 1.003 29 H 0.038 0.962 30 H 0.156 0.844 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.064 0.936 34 H 0.101 0.899 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.063 0.937 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.044 -22.058 3.399 22.319 hybrid contribution -0.764 -1.371 0.802 1.763 sum -0.720 -23.430 4.201 23.814 Atomic orbital electron populations 1.70803 1.06892 1.30434 1.46668 1.25890 0.96467 1.02811 0.93661 0.83464 0.74782 0.74924 0.76613 1.20765 1.21405 1.21291 1.21979 0.94868 0.91160 1.55671 0.92498 1.19728 0.91148 0.88513 0.94721 1.60245 1.19942 0.99439 1.48085 1.22662 0.96217 0.86779 0.98504 0.88707 1.24009 1.03278 1.00702 0.93569 0.86909 1.22593 0.97120 0.90427 0.95892 1.65589 1.37980 1.15382 1.03854 1.21210 0.92745 0.94121 0.96730 1.19722 0.97441 0.94947 0.95088 1.21018 0.98218 0.93637 0.99008 1.21142 0.99799 0.99595 0.93524 1.21136 0.98207 0.97133 0.97740 1.21120 0.99683 0.94444 0.98664 1.21089 0.99682 0.99369 0.93010 1.22596 0.98691 0.92736 0.92410 1.23573 1.02245 0.96466 0.95670 0.86477 0.92297 1.00263 0.96168 0.84393 0.93861 0.89986 0.93552 0.89858 0.86060 0.86194 0.86310 0.86177 0.86364 0.93699 0.89690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.92 13.65 55.43 0.76 -27.16 16 2 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 3 Si 1.07 25.33 29.90 -169.99 -5.08 20.25 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.60 -17.19 9.32 -34.44 -0.32 -17.51 16 8 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.19 4.85 4.60 -4.98 -0.02 4.83 16 10 N -0.65 -14.15 6.77 -107.99 -0.73 -14.88 16 11 C 0.07 1.28 5.86 -67.71 -0.40 0.88 16 12 H 0.10 1.77 7.90 -51.93 -0.41 1.36 16 13 C -0.19 -2.97 6.80 -89.23 -0.61 -3.57 16 14 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 15 C 0.07 0.90 5.51 -2.18 -0.01 0.89 16 16 N -0.50 -6.33 5.33 -231.41 -1.23 -7.56 16 17 C 0.08 0.85 4.98 -4.98 -0.02 0.82 16 18 C -0.07 -0.76 5.19 -104.62 -0.54 -1.30 16 19 C -0.10 -0.99 9.70 -39.58 -0.38 -1.37 16 20 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 21 C -0.12 -1.09 10.05 -39.59 -0.40 -1.48 16 22 C -0.12 -1.13 10.05 -39.59 -0.40 -1.52 16 23 C -0.11 -1.16 8.94 -39.58 -0.35 -1.51 16 24 C 0.06 0.81 6.26 -2.18 -0.01 0.80 16 25 C -0.16 -2.44 7.05 -89.23 -0.63 -3.07 16 26 H 0.12 1.84 8.14 -51.93 -0.42 1.42 16 27 H 0.27 8.13 7.22 -40.82 -0.29 7.83 16 28 H -0.02 -0.55 8.01 -51.92 -0.42 -0.97 16 29 H 0.02 0.56 8.00 -51.93 -0.42 0.15 16 30 H 0.34 7.07 8.54 -39.30 -0.34 6.73 16 31 H 0.04 0.58 7.75 -51.93 -0.40 0.17 16 32 H 0.08 1.07 7.89 -51.93 -0.41 0.66 16 33 H 0.05 0.49 7.71 -51.93 -0.40 0.09 16 34 H 0.08 0.79 8.02 -51.93 -0.42 0.37 16 35 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 36 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 37 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 38 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 39 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 40 H 0.04 0.58 8.00 -51.93 -0.42 0.16 16 41 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 338.34 15.07 5.10 5.10 Total: -1.00 -30.98 338.34 -12.29 -43.27 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -6.50 Total: 5.24 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -4.60 Total: -24.26 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: -1.21 Total: -49.60 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -5.08 Total: 20.25 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.98 -12.29 -43.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398278947.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.098 kcal (2) G-P(sol) polarization free energy of solvation -30.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds