Wall clock time and date at job start Mon Mar 30 2020 05:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48494 * 109.47225 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00450 * 3 2 1 6 6 H 1.48498 * 109.47306 * 239.99734 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47509 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99998 * 179.97438 * 10 9 7 12 12 H 1.09000 * 115.51885 * 9.57369 * 11 10 9 13 13 C 1.53001 * 117.44186 * 224.22666 * 11 10 9 14 14 H 1.08998 * 119.52534 * 4.09136 * 13 11 10 15 15 C 1.54378 * 118.12813 * 160.68672 * 13 11 10 16 16 N 1.48565 * 104.59516 * 87.22617 * 15 13 11 17 17 C 1.46897 * 111.00128 * 200.95877 * 16 15 13 18 18 C 1.50699 * 109.47295 * 285.42382 * 17 16 15 19 19 C 1.38234 * 119.99800 * 269.72412 * 18 17 16 20 20 C 1.38236 * 120.00193 * 179.76451 * 19 18 17 21 21 C 1.38238 * 119.99537 * 0.50783 * 20 19 18 22 22 C 1.38225 * 120.00028 * 359.74490 * 21 20 19 23 23 C 1.38231 * 120.00453 * 0.02562 * 22 21 20 24 24 C 1.48559 * 104.22337 * 320.51735 * 16 15 13 25 25 C 1.53002 * 117.44400 * 154.99595 * 11 10 9 26 26 H 1.09000 * 119.52487 * 354.35722 * 25 11 10 27 27 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 29 29 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 30 30 H 1.00891 * 111.00233 * 56.04330 * 10 9 7 31 31 H 1.09004 * 110.40989 * 328.45198 * 15 13 11 32 32 H 1.08999 * 110.41373 * 206.00608 * 15 13 11 33 33 H 1.09007 * 109.46779 * 45.41815 * 17 16 15 34 34 H 1.08996 * 109.47473 * 165.41741 * 17 16 15 35 35 H 1.08003 * 119.99855 * 359.97438 * 19 18 17 36 36 H 1.07999 * 120.00291 * 180.23238 * 20 19 18 37 37 H 1.07997 * 119.99485 * 179.72714 * 21 20 19 38 38 H 1.08007 * 119.99963 * 179.97438 * 22 21 20 39 39 H 1.08000 * 120.00172 * 179.97438 * 23 22 21 40 40 H 1.09003 * 110.40893 * 280.70805 * 24 16 15 41 41 H 1.08997 * 110.51054 * 158.31041 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6966 -1.2124 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 7 2.2058 -3.6156 0.0180 11 6 1.5056 -4.9070 0.0253 12 1 0.4290 -4.8583 -0.1382 13 6 2.0251 -5.9855 0.9781 14 1 2.8410 -5.7506 1.6616 15 6 1.0796 -7.1494 1.3449 16 7 1.2925 -8.1565 0.2737 17 6 0.1524 -9.0785 0.1838 18 6 0.1950 -10.0443 1.3398 19 6 0.8709 -11.2435 1.2139 20 6 0.9141 -12.1274 2.2759 21 6 0.2725 -11.8166 3.4603 22 6 -0.4078 -10.6197 3.5844 23 6 -0.4470 -9.7337 2.5240 24 6 1.4230 -7.3486 -0.9662 25 6 2.2510 -6.1165 -0.5423 26 1 3.2238 -5.9755 -1.0133 27 1 -0.4850 -0.8401 -0.0004 28 1 0.6248 -2.5524 0.9029 29 1 0.6241 -2.5613 -0.8770 30 1 2.8407 -3.5445 0.7989 31 1 0.0435 -6.8109 1.3479 32 1 1.3475 -7.5651 2.3162 33 1 -0.7775 -8.5108 0.2187 34 1 0.2055 -9.6315 -0.7539 35 1 1.3681 -11.4885 0.2870 36 1 1.4453 -13.0627 2.1789 37 1 0.3025 -12.5090 4.2885 38 1 -0.9094 -10.3770 4.5096 39 1 -0.9788 -8.7988 2.6209 40 1 0.4405 -7.0413 -1.3247 41 1 1.9485 -7.9131 -1.7363 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398278947.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:00 Heat of formation + Delta-G solvation = 40.357792 kcal Electronic energy + Delta-G solvation = -19766.194325 eV Core-core repulsion = 16838.500742 eV Total energy + Delta-G solvation = -2927.693583 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.23819 -39.91943 -37.23688 -35.55167 -33.72658 -31.79741 -31.75413 -29.48027 -28.24008 -26.79333 -24.35604 -23.49139 -23.21663 -21.91138 -21.72433 -21.12712 -19.05570 -17.64200 -17.50972 -16.63095 -16.24572 -16.15824 -15.90058 -15.57184 -15.27019 -14.97098 -14.55937 -14.41453 -14.24462 -13.91068 -13.72292 -13.50191 -13.29068 -13.01286 -12.83156 -12.55639 -12.51737 -12.38856 -11.92461 -11.84987 -11.80088 -11.59067 -11.09647 -10.74860 -10.64221 -9.80647 -9.73271 -9.47910 -9.17482 -8.75729 -6.47326 0.42645 0.52361 1.53208 1.61800 1.81750 2.52183 2.56987 2.68921 2.99974 3.09634 3.23759 3.64201 3.80560 3.83782 3.93836 4.05274 4.07418 4.16583 4.19585 4.29607 4.32753 4.40727 4.46474 4.57402 4.63671 4.67947 4.74761 4.78068 4.85165 4.93030 5.04712 5.11618 5.17358 5.17743 5.53734 5.62646 5.64300 5.65703 5.76464 5.91497 5.95742 6.13960 6.31185 6.45233 6.55988 7.34959 8.64280 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.040396 B = 0.002845 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.967345 B = 9839.650781 C =10130.438398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.036 4.036 3 Si 1.125 2.875 4 H -0.282 1.282 5 H -0.267 1.267 6 H -0.269 1.269 7 C -0.615 4.615 8 H 0.057 0.943 9 C 0.199 3.801 10 N -0.650 5.650 11 C 0.040 3.960 12 H 0.082 0.918 13 C -0.181 4.181 14 H 0.117 0.883 15 C 0.074 3.926 16 N -0.504 5.504 17 C 0.082 3.918 18 C -0.087 4.087 19 C -0.111 4.111 20 C -0.128 4.128 21 C -0.128 4.128 22 C -0.130 4.130 23 C -0.128 4.128 24 C 0.067 3.933 25 C -0.146 4.146 26 H 0.117 0.883 27 H 0.254 0.746 28 H -0.040 1.040 29 H -0.003 1.003 30 H 0.340 0.660 31 H 0.041 0.959 32 H 0.088 0.912 33 H 0.044 0.956 34 H 0.097 0.903 35 H 0.131 0.869 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.135 0.865 39 H 0.117 0.883 40 H 0.045 0.955 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.886 -24.893 4.329 25.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.233 4.233 3 Si 0.945 3.055 4 H -0.208 1.208 5 H -0.192 1.192 6 H -0.194 1.194 7 C -0.653 4.653 8 H 0.076 0.924 9 C 0.072 3.928 10 N -0.279 5.279 11 C -0.072 4.072 12 H 0.100 0.900 13 C -0.201 4.201 14 H 0.134 0.866 15 C -0.054 4.054 16 N -0.228 5.228 17 C -0.046 4.046 18 C -0.087 4.087 19 C -0.129 4.129 20 C -0.145 4.145 21 C -0.146 4.146 22 C -0.148 4.148 23 C -0.147 4.147 24 C -0.060 4.060 25 C -0.166 4.166 26 H 0.135 0.865 27 H 0.063 0.937 28 H -0.023 1.023 29 H 0.015 0.985 30 H 0.159 0.841 31 H 0.059 0.941 32 H 0.106 0.894 33 H 0.062 0.938 34 H 0.116 0.884 35 H 0.149 0.851 36 H 0.159 0.841 37 H 0.159 0.841 38 H 0.153 0.847 39 H 0.135 0.865 40 H 0.063 0.937 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.242 -23.587 3.722 23.911 hybrid contribution -1.165 -1.043 0.729 1.725 sum 0.077 -24.630 4.451 25.029 Atomic orbital electron populations 1.70933 1.07957 1.29703 1.48560 1.27528 0.96506 1.06898 0.92393 0.82842 0.74004 0.70541 0.78129 1.20759 1.19173 1.19435 1.22353 0.95128 0.92432 1.55377 0.92433 1.19381 0.91160 0.89720 0.92589 1.60149 1.19327 0.99910 1.48501 1.22610 0.95712 0.86191 1.02656 0.89972 1.24019 1.03063 0.99272 0.93790 0.86550 1.22541 0.96409 0.89859 0.96589 1.65604 1.39100 1.14940 1.03153 1.21245 0.91814 0.93800 0.97709 1.19778 0.98359 0.95427 0.95133 1.21228 0.98248 0.93577 0.99851 1.21458 0.99602 1.00237 0.93245 1.21469 0.97473 0.97216 0.98447 1.21384 0.99835 0.94601 0.99020 1.21215 1.00167 0.99779 0.93499 1.22632 0.98490 0.91843 0.93080 1.23621 1.01835 0.95239 0.95893 0.86486 0.93719 1.02269 0.98519 0.84083 0.94120 0.89371 0.93757 0.88425 0.85093 0.84085 0.84137 0.84734 0.86525 0.93710 0.87670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.39 13.65 21.45 0.29 -58.10 16 2 C -0.04 -2.08 5.46 84.65 0.46 -1.62 16 3 Si 1.12 50.41 29.90 68.60 2.05 52.46 16 4 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 6 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.62 -35.86 9.32 25.60 0.24 -35.62 16 8 H 0.06 3.28 7.81 -2.91 -0.02 3.26 16 9 C 0.20 10.82 4.60 85.56 0.39 11.22 16 10 N -0.65 -28.98 6.77 -495.56 -3.35 -32.34 16 11 C 0.04 1.47 5.86 44.92 0.26 1.73 16 12 H 0.08 3.20 7.90 -2.39 -0.02 3.18 16 13 C -0.18 -5.40 6.80 -9.90 -0.07 -5.46 16 14 H 0.12 3.41 8.14 -2.39 -0.02 3.39 16 15 C 0.07 1.90 5.51 86.45 0.48 2.37 16 16 N -0.50 -11.80 5.33 -886.04 -4.72 -16.52 16 17 C 0.08 1.62 4.98 85.56 0.43 2.04 16 18 C -0.09 -1.72 5.19 -19.87 -0.10 -1.82 16 19 C -0.11 -1.97 9.70 22.27 0.22 -1.75 16 20 C -0.13 -1.98 10.05 22.27 0.22 -1.76 16 21 C -0.13 -1.96 10.05 22.27 0.22 -1.73 16 22 C -0.13 -2.23 10.05 22.26 0.22 -2.00 16 23 C -0.13 -2.50 8.94 22.27 0.20 -2.30 16 24 C 0.07 1.62 6.26 86.45 0.54 2.16 16 25 C -0.15 -4.34 7.05 -9.89 -0.07 -4.41 16 26 H 0.12 3.53 8.14 -2.39 -0.02 3.51 16 27 H 0.25 16.07 7.22 -92.70 -0.67 15.40 16 28 H -0.04 -2.30 8.01 -2.38 -0.02 -2.32 16 29 H 0.00 -0.19 8.00 -2.39 -0.02 -0.21 16 30 H 0.34 14.46 8.54 -89.70 -0.77 13.69 16 31 H 0.04 1.07 7.75 -2.39 -0.02 1.05 16 32 H 0.09 2.18 7.89 -2.39 -0.02 2.17 16 33 H 0.04 0.90 7.71 -2.38 -0.02 0.88 16 34 H 0.10 1.64 8.02 -2.39 -0.02 1.62 16 35 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 36 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 37 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 38 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 39 H 0.12 2.21 8.06 -2.91 -0.02 2.19 16 40 H 0.04 1.10 8.00 -2.39 -0.02 1.08 16 41 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -66.73 338.34 -1.75 -68.48 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: 0.34 Total: 24.97 kcal Atomic # 6 Polarization: -42.61 SS G_CDS: 3.65 Total: -38.96 kcal Atomic # 7 Polarization: -99.18 SS G_CDS: -7.78 Total: -106.96 kcal Atomic # 14 Polarization: 50.41 SS G_CDS: 2.05 Total: 52.46 kcal Total: -66.73 -1.75 -68.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398278947.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.838 kcal (2) G-P(sol) polarization free energy of solvation -66.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds