Wall clock time and date at job start Mon Mar 30 2020 05:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99718 * 2 1 4 4 C 1.52999 * 109.53182 * 63.94246 * 3 2 1 5 5 O 1.42897 * 109.47646 * 58.94963 * 4 3 2 6 6 C 1.53115 * 109.50123 * 184.03475 * 3 2 1 7 7 C 1.53112 * 109.16151 * 62.29012 * 6 3 2 8 8 C 1.53036 * 109.27818 * 57.65559 * 7 6 3 9 9 N 1.46850 * 109.52150 * 300.82022 * 8 7 6 10 10 C 1.46898 * 111.00103 * 185.84105 * 9 8 7 11 11 C 1.50705 * 109.47229 * 66.04568 * 10 9 8 12 12 O 1.21292 * 119.99913 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99981 * 179.97438 * 11 10 9 14 14 C 1.37096 * 120.00117 * 179.97438 * 13 11 10 15 15 H 1.08003 * 119.99946 * 0.02562 * 14 13 11 16 16 C 1.38955 * 120.00231 * 180.02562 * 14 13 11 17 17 N 1.31411 * 120.00019 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 119.99879 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47071 * 89.99887 * 18 16 14 20 20 H 1.48496 * 109.46860 * 209.99905 * 18 16 14 21 21 H 1.48502 * 109.46906 * 329.99934 * 18 16 14 22 22 C 1.46845 * 111.19932 * 61.74226 * 9 8 7 23 23 H 1.08997 * 109.47098 * 65.85264 * 1 2 3 24 24 H 1.08996 * 109.47079 * 185.84849 * 1 2 3 25 25 H 1.08996 * 109.46962 * 305.85245 * 1 2 3 26 26 H 1.09006 * 109.47299 * 178.95363 * 4 3 2 27 27 H 1.09002 * 109.47369 * 298.95054 * 4 3 2 28 28 H 0.96706 * 114.00390 * 180.02562 * 5 4 3 29 29 H 1.09004 * 109.52639 * 302.38482 * 6 3 2 30 30 H 1.09001 * 109.57796 * 182.22656 * 6 3 2 31 31 H 1.09001 * 109.50466 * 297.70856 * 7 6 3 32 32 H 1.08999 * 109.50749 * 177.59524 * 7 6 3 33 33 H 1.09008 * 109.46250 * 180.80886 * 8 7 6 34 34 H 1.08995 * 109.46556 * 60.83678 * 8 7 6 35 35 H 1.09001 * 109.47486 * 186.04577 * 10 9 8 36 36 H 1.09004 * 109.47042 * 306.04445 * 10 9 8 37 37 H 0.97005 * 120.00321 * 0.02562 * 13 11 10 38 38 H 0.96996 * 119.99664 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.46002 * 58.27541 * 22 9 8 40 40 H 1.09001 * 109.46383 * 178.24342 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6396 2.0304 1.2954 5 8 2.1118 1.2777 2.4145 6 6 3.5334 1.1870 -0.1016 7 6 3.8978 0.5145 -1.4279 8 6 3.3171 1.3310 -2.5847 9 7 1.8579 1.4146 -2.4423 10 6 1.2521 2.0726 -3.6076 11 6 1.4444 1.2098 -4.8282 12 8 2.0282 0.1506 -4.7362 13 7 0.9667 1.6146 -6.0216 14 6 1.1421 0.8299 -7.1320 15 1 1.6626 -0.1129 -7.0503 16 6 0.6501 1.2474 -8.3627 17 7 0.8177 0.4950 -9.4269 18 14 -0.2497 2.8784 -8.5041 19 1 0.7251 3.9568 -8.8074 20 1 -1.2532 2.7969 -9.5956 21 1 -0.9362 3.1778 -7.2218 22 6 1.4841 2.0991 -1.1981 23 1 -0.3633 0.4204 -0.9377 24 1 -0.3633 -1.0223 0.1047 25 1 -0.3633 0.6019 0.8329 26 1 2.0987 3.0191 1.3027 27 1 0.5561 2.1326 1.3574 28 1 1.9113 1.6788 3.2712 29 1 3.9080 0.5856 0.7268 30 1 3.9805 2.1803 -0.0619 31 1 3.4843 -0.4938 -1.4505 32 1 4.9823 0.4657 -1.5254 33 1 3.5626 0.8469 -3.5301 34 1 3.7416 2.3347 -2.5698 35 1 0.1866 2.2181 -3.4297 36 1 1.7291 3.0397 -3.7675 37 1 0.4995 2.4615 -6.0951 38 1 0.4746 0.7867 -10.2860 39 1 1.9172 3.0993 -1.1897 40 1 0.3984 2.1730 -1.1363 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401735203.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:47 Heat of formation + Delta-G solvation = -112.098201 kcal Electronic energy + Delta-G solvation = -22221.182699 eV Core-core repulsion = 18843.736114 eV Total energy + Delta-G solvation = -3377.446585 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.13422 -38.42350 -36.67523 -35.97305 -33.94901 -32.96238 -31.62920 -30.80387 -27.81645 -26.66501 -25.83307 -24.54233 -22.68957 -21.43320 -19.56243 -19.31563 -18.24243 -17.57724 -16.35459 -16.15858 -15.68181 -15.26675 -15.15257 -14.89442 -14.64196 -14.10790 -13.73577 -13.44841 -13.27205 -13.14751 -12.88246 -12.61492 -12.32999 -12.20649 -12.11911 -11.86366 -11.57129 -11.19779 -11.05647 -10.61876 -10.57914 -10.42975 -10.31674 -10.00259 -9.95650 -9.50699 -9.35387 -8.49507 -8.15565 -7.88638 -6.29059 -3.80180 3.03011 3.07020 3.15388 3.50669 3.76625 4.05026 4.11512 4.23474 4.58554 4.74031 4.79308 4.96147 5.04300 5.15775 5.22494 5.30282 5.39254 5.41636 5.51273 5.55226 5.64182 5.65886 5.73333 5.85772 5.90183 5.93642 5.97067 6.12174 6.16551 6.55678 6.67541 7.22410 7.27446 7.40647 7.47286 7.61074 8.17264 8.62890 8.97915 9.44861 9.86623 10.84227 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.035650 B = 0.004210 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.216215 B = 6649.826442 C = 6837.679656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.347 6.347 3 C 0.127 3.873 4 C 0.052 3.948 5 O -0.556 6.556 6 C -0.101 4.101 7 C -0.111 4.111 8 C 0.052 3.948 9 N -0.502 5.502 10 C 0.043 3.957 11 C 0.454 3.546 12 O -0.554 6.554 13 N -0.593 5.593 14 C -0.303 4.303 15 H 0.120 0.880 16 C 0.041 3.959 17 N -0.882 5.882 18 Si 0.879 3.121 19 H -0.272 1.272 20 H -0.277 1.277 21 H -0.270 1.270 22 C 0.031 3.969 23 H 0.047 0.953 24 H 0.081 0.919 25 H 0.031 0.969 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.374 0.626 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.020 0.980 35 H 0.087 0.913 36 H 0.047 0.953 37 H 0.369 0.631 38 H 0.273 0.727 39 H 0.039 0.961 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.254 8.585 20.717 22.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.265 6.265 3 C 0.087 3.913 4 C -0.027 4.027 5 O -0.360 6.360 6 C -0.139 4.139 7 C -0.149 4.149 8 C -0.076 4.076 9 N -0.226 5.226 10 C -0.088 4.088 11 C 0.239 3.761 12 O -0.435 6.435 13 N -0.233 5.233 14 C -0.432 4.432 15 H 0.137 0.863 16 C -0.162 4.162 17 N -0.523 5.523 18 Si 0.706 3.294 19 H -0.197 1.197 20 H -0.202 1.202 21 H -0.196 1.196 22 C -0.098 4.098 23 H 0.066 0.934 24 H 0.100 0.900 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.220 0.780 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.123 0.877 34 H 0.038 0.962 35 H 0.105 0.895 36 H 0.065 0.935 37 H 0.202 0.798 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.259 6.770 20.070 21.183 hybrid contribution -1.087 2.913 0.064 3.110 sum -0.828 9.683 20.134 22.357 Atomic orbital electron populations 1.22704 0.82083 1.02330 0.99476 1.88035 1.18860 1.25189 1.94464 1.21449 0.95163 0.84393 0.90305 1.22750 0.97915 0.94336 0.87664 1.86580 1.81983 1.51481 1.15990 1.21497 0.91939 1.01073 0.99355 1.21507 0.99541 1.01167 0.92704 1.22315 0.85851 0.97847 1.01551 1.61354 1.10748 1.51113 0.99400 1.21890 1.00273 0.95498 0.91164 1.19611 0.84672 0.88268 0.83522 1.90545 1.44384 1.23873 1.84717 1.42213 1.52315 1.20634 1.08101 1.19432 1.35195 1.04412 0.84136 0.86251 1.25028 0.97894 0.98037 0.95214 1.69621 1.45753 1.37264 0.99622 0.86680 0.80289 0.84026 0.78425 1.19709 1.20207 1.19551 1.22596 1.00862 0.95318 0.90999 0.93414 0.90029 0.95025 0.92989 0.93375 0.77984 0.90444 0.91583 0.89929 0.91764 0.87710 0.96221 0.89478 0.93474 0.79810 0.91660 0.94322 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.13 101.05 1.02 1.41 16 2 O -0.35 -5.29 9.55 -45.60 -0.44 -5.72 16 3 C 0.13 1.62 0.50 -90.54 -0.05 1.57 16 4 C 0.05 0.50 5.67 37.16 0.21 0.71 16 5 O -0.56 -5.60 12.96 -45.60 -0.59 -6.19 16 6 C -0.10 -1.29 4.84 -26.61 -0.13 -1.42 16 7 C -0.11 -1.64 5.94 -26.65 -0.16 -1.80 16 8 C 0.05 0.85 5.11 -3.83 -0.02 0.83 16 9 N -0.50 -8.32 4.27 -236.11 -1.01 -9.32 16 10 C 0.04 0.73 5.45 -4.97 -0.03 0.71 16 11 C 0.45 10.37 7.46 -10.98 -0.08 10.28 16 12 O -0.55 -14.88 13.92 5.55 0.08 -14.80 16 13 N -0.59 -14.16 5.09 -10.96 -0.06 -14.22 16 14 C -0.30 -8.60 10.16 -14.93 -0.15 -8.75 16 15 H 0.12 3.88 7.39 -52.48 -0.39 3.49 16 16 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 17 N -0.88 -25.90 13.96 55.50 0.77 -25.13 16 18 Si 0.88 19.40 27.74 -169.99 -4.71 14.68 16 19 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 20 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16 22 C 0.03 0.40 3.74 -3.84 -0.01 0.38 16 23 H 0.05 0.62 6.68 -51.93 -0.35 0.28 16 24 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.03 0.32 6.28 -51.93 -0.33 0.00 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.41 6.56 -51.93 -0.34 0.07 16 28 H 0.37 1.89 9.12 45.56 0.42 2.31 16 29 H 0.08 1.02 7.79 -51.93 -0.40 0.61 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 1.42 7.80 -51.93 -0.40 1.02 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.10 2.11 5.80 -51.92 -0.30 1.81 16 34 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.09 1.29 7.98 -51.93 -0.41 0.88 16 36 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 37 H 0.37 7.74 5.76 -40.82 -0.24 7.51 16 38 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.90 6.46 -51.93 -0.34 0.56 16 LS Contribution 315.64 15.07 4.76 4.76 Total: -1.00 -34.33 315.64 -5.90 -40.23 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -5.21 Total: 10.76 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: 0.51 Total: 4.96 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: -0.29 Total: -48.67 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.95 Total: -26.71 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -4.71 Total: 14.68 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.33 -5.90 -40.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401735203.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.872 kcal (2) G-P(sol) polarization free energy of solvation -34.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds