Wall clock time and date at job start Mon Mar 30 2020 05:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99718 * 2 1 4 4 C 1.52999 * 109.53182 * 63.94246 * 3 2 1 5 5 O 1.42897 * 109.47646 * 58.94963 * 4 3 2 6 6 C 1.53115 * 109.50123 * 184.03475 * 3 2 1 7 7 C 1.53112 * 109.16151 * 62.29012 * 6 3 2 8 8 C 1.53036 * 109.27818 * 57.65559 * 7 6 3 9 9 N 1.46850 * 109.52150 * 300.82022 * 8 7 6 10 10 C 1.46898 * 111.00103 * 185.84105 * 9 8 7 11 11 C 1.50705 * 109.47229 * 66.04568 * 10 9 8 12 12 O 1.21292 * 119.99913 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99981 * 179.97438 * 11 10 9 14 14 C 1.37096 * 120.00117 * 179.97438 * 13 11 10 15 15 H 1.08003 * 119.99946 * 0.02562 * 14 13 11 16 16 C 1.38955 * 120.00231 * 180.02562 * 14 13 11 17 17 N 1.31411 * 120.00019 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 119.99879 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47071 * 89.99887 * 18 16 14 20 20 H 1.48496 * 109.46860 * 209.99905 * 18 16 14 21 21 H 1.48502 * 109.46906 * 329.99934 * 18 16 14 22 22 C 1.46845 * 111.19932 * 61.74226 * 9 8 7 23 23 H 1.08997 * 109.47098 * 65.85264 * 1 2 3 24 24 H 1.08996 * 109.47079 * 185.84849 * 1 2 3 25 25 H 1.08996 * 109.46962 * 305.85245 * 1 2 3 26 26 H 1.09006 * 109.47299 * 178.95363 * 4 3 2 27 27 H 1.09002 * 109.47369 * 298.95054 * 4 3 2 28 28 H 0.96706 * 114.00390 * 180.02562 * 5 4 3 29 29 H 1.09004 * 109.52639 * 302.38482 * 6 3 2 30 30 H 1.09001 * 109.57796 * 182.22656 * 6 3 2 31 31 H 1.09001 * 109.50466 * 297.70856 * 7 6 3 32 32 H 1.08999 * 109.50749 * 177.59524 * 7 6 3 33 33 H 1.09008 * 109.46250 * 180.80886 * 8 7 6 34 34 H 1.08995 * 109.46556 * 60.83678 * 8 7 6 35 35 H 1.09001 * 109.47486 * 186.04577 * 10 9 8 36 36 H 1.09004 * 109.47042 * 306.04445 * 10 9 8 37 37 H 0.97005 * 120.00321 * 0.02562 * 13 11 10 38 38 H 0.96996 * 119.99664 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.46002 * 58.27541 * 22 9 8 40 40 H 1.09001 * 109.46383 * 178.24342 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6396 2.0304 1.2954 5 8 2.1118 1.2777 2.4145 6 6 3.5334 1.1870 -0.1016 7 6 3.8978 0.5145 -1.4279 8 6 3.3171 1.3310 -2.5847 9 7 1.8579 1.4146 -2.4423 10 6 1.2521 2.0726 -3.6076 11 6 1.4444 1.2098 -4.8282 12 8 2.0282 0.1506 -4.7362 13 7 0.9667 1.6146 -6.0216 14 6 1.1421 0.8299 -7.1320 15 1 1.6626 -0.1129 -7.0503 16 6 0.6501 1.2474 -8.3627 17 7 0.8177 0.4950 -9.4269 18 14 -0.2497 2.8784 -8.5041 19 1 0.7251 3.9568 -8.8074 20 1 -1.2532 2.7969 -9.5956 21 1 -0.9362 3.1778 -7.2218 22 6 1.4841 2.0991 -1.1981 23 1 -0.3633 0.4204 -0.9377 24 1 -0.3633 -1.0223 0.1047 25 1 -0.3633 0.6019 0.8329 26 1 2.0987 3.0191 1.3027 27 1 0.5561 2.1326 1.3574 28 1 1.9113 1.6788 3.2712 29 1 3.9080 0.5856 0.7268 30 1 3.9805 2.1803 -0.0619 31 1 3.4843 -0.4938 -1.4505 32 1 4.9823 0.4657 -1.5254 33 1 3.5626 0.8469 -3.5301 34 1 3.7416 2.3347 -2.5698 35 1 0.1866 2.2181 -3.4297 36 1 1.7291 3.0397 -3.7675 37 1 0.4995 2.4615 -6.0951 38 1 0.4746 0.7867 -10.2860 39 1 1.9172 3.0993 -1.1897 40 1 0.3984 2.1730 -1.1363 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401735203.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:46 Heat of formation + Delta-G solvation = -142.561611 kcal Electronic energy + Delta-G solvation = -22222.503691 eV Core-core repulsion = 18843.736114 eV Total energy + Delta-G solvation = -3378.767578 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.23324 -40.08053 -37.75974 -36.89857 -35.93224 -34.18856 -33.68752 -31.81078 -29.27052 -27.64084 -26.76526 -26.33269 -23.93260 -22.57090 -21.22605 -20.56569 -20.15279 -18.34723 -17.72650 -17.30556 -16.84120 -16.73826 -16.38440 -16.22094 -15.95303 -15.50611 -15.08002 -14.85651 -14.62121 -14.39978 -14.22540 -13.89926 -13.76845 -13.41123 -13.19353 -13.05669 -12.95888 -12.67166 -12.40794 -12.13785 -11.97701 -11.75993 -11.68021 -11.39794 -11.10039 -10.84399 -10.45209 -10.23469 -10.15164 -9.12572 -8.40074 -6.00785 1.30194 1.36046 1.45009 1.98182 2.23892 2.46730 2.96489 3.16010 3.25269 3.41607 3.74257 3.82463 4.04006 4.18366 4.25550 4.33228 4.36772 4.39963 4.42399 4.48210 4.56315 4.58028 4.59022 4.70381 4.78430 4.87999 4.98242 5.05143 5.05775 5.33284 5.46041 5.54792 5.92159 6.06887 6.19551 6.51454 6.61808 6.90517 6.96550 7.41764 8.00384 8.77906 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.035650 B = 0.004210 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.216215 B = 6649.826442 C = 6837.679656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.383 6.383 3 C 0.117 3.883 4 C 0.058 3.942 5 O -0.580 6.580 6 C -0.095 4.095 7 C -0.107 4.107 8 C 0.056 3.944 9 N -0.529 5.529 10 C 0.055 3.945 11 C 0.451 3.549 12 O -0.604 6.604 13 N -0.593 5.593 14 C -0.327 4.327 15 H 0.053 0.947 16 C -0.016 4.016 17 N -0.937 5.937 18 Si 0.966 3.034 19 H -0.257 1.257 20 H -0.276 1.276 21 H -0.230 1.230 22 C 0.033 3.967 23 H 0.039 0.961 24 H 0.077 0.923 25 H 0.057 0.943 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.395 0.605 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.043 0.957 35 H 0.119 0.881 36 H 0.081 0.919 37 H 0.389 0.611 38 H 0.279 0.721 39 H 0.067 0.933 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.815 12.834 23.094 26.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C 0.077 3.923 4 C -0.020 4.020 5 O -0.388 6.388 6 C -0.133 4.133 7 C -0.145 4.145 8 C -0.072 4.072 9 N -0.254 5.254 10 C -0.075 4.075 11 C 0.239 3.761 12 O -0.488 6.488 13 N -0.235 5.235 14 C -0.456 4.456 15 H 0.071 0.929 16 C -0.215 4.215 17 N -0.578 5.578 18 Si 0.786 3.214 19 H -0.181 1.181 20 H -0.201 1.201 21 H -0.153 1.153 22 C -0.095 4.095 23 H 0.058 0.942 24 H 0.096 0.904 25 H 0.075 0.925 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.245 0.755 29 H 0.088 0.912 30 H 0.110 0.890 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.137 0.863 36 H 0.098 0.902 37 H 0.225 0.775 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.308 11.039 22.502 25.098 hybrid contribution -0.501 1.427 -0.626 1.637 sum -1.809 12.466 21.876 25.244 Atomic orbital electron populations 1.22756 0.81120 1.02705 1.00051 1.87997 1.20159 1.27271 1.94757 1.21688 0.94621 0.83831 0.92206 1.22662 0.98956 0.94493 0.85912 1.86526 1.82319 1.52551 1.17369 1.21475 0.92791 1.01882 0.97112 1.21424 0.99928 0.99212 0.93927 1.22139 0.86705 0.98638 0.99689 1.61238 1.10449 1.52933 1.00784 1.21816 1.02632 0.94890 0.88209 1.20910 0.82269 0.88119 0.84836 1.90539 1.45935 1.26546 1.85740 1.42023 1.53209 1.20981 1.07277 1.18989 1.36369 1.03463 0.86784 0.92906 1.26128 0.98295 1.03273 0.93762 1.69812 1.47081 1.40263 1.00607 0.85348 0.78788 0.77119 0.80139 1.18128 1.20096 1.15349 1.22685 1.02049 0.96058 0.88705 0.94196 0.90405 0.92458 0.90486 0.91933 0.75516 0.91221 0.89003 0.93676 0.90677 0.92530 0.93887 0.86298 0.90154 0.77533 0.91195 0.91543 0.88889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.13 113.37 1.15 1.85 16 2 O -0.38 -11.27 9.55 -139.07 -1.33 -12.60 16 3 C 0.12 2.63 0.50 -10.74 -0.01 2.62 16 4 C 0.06 0.88 5.67 71.98 0.41 1.29 16 5 O -0.58 -9.84 12.96 -139.07 -1.80 -11.64 16 6 C -0.10 -2.23 4.84 30.67 0.15 -2.08 16 7 C -0.11 -3.18 5.94 30.64 0.18 -2.99 16 8 C 0.06 1.83 5.11 86.32 0.44 2.27 16 9 N -0.53 -16.58 4.27 -900.92 -3.85 -20.43 16 10 C 0.06 1.73 5.45 85.56 0.47 2.19 16 11 C 0.45 20.75 7.46 87.66 0.65 21.40 16 12 O -0.60 -34.34 13.92 -3.07 -0.04 -34.39 16 13 N -0.59 -28.23 5.09 -306.98 -1.56 -29.79 16 14 C -0.33 -19.41 10.16 84.04 0.85 -18.55 16 15 H 0.05 3.75 7.39 -2.91 -0.02 3.73 16 16 C -0.02 -0.91 5.50 84.93 0.47 -0.45 16 17 N -0.94 -57.15 13.96 21.66 0.30 -56.85 16 18 Si 0.97 38.85 27.74 68.60 1.90 40.76 16 19 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 20 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 21 H -0.23 -7.73 6.52 99.48 0.65 -7.08 16 22 C 0.03 0.71 3.74 86.33 0.32 1.03 16 23 H 0.04 0.97 6.68 -2.39 -0.02 0.96 16 24 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.06 1.01 6.28 -2.39 -0.02 1.00 16 26 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 27 H 0.06 0.76 6.56 -2.39 -0.02 0.75 16 28 H 0.40 2.65 9.12 -74.05 -0.68 1.98 16 29 H 0.07 1.74 7.79 -2.39 -0.02 1.72 16 30 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.04 1.65 7.80 -2.39 -0.02 1.63 16 32 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.06 2.39 5.80 -2.38 -0.01 2.38 16 34 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.12 2.99 7.98 -2.39 -0.02 2.97 16 36 H 0.08 2.03 8.12 -2.38 -0.02 2.01 16 37 H 0.39 15.20 5.76 -92.70 -0.53 14.67 16 38 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 39 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.09 1.73 6.46 -2.39 -0.02 1.71 16 Total: -1.00 -82.65 315.64 -1.50 -84.16 By element: Atomic # 1 Polarization: 32.41 SS G_CDS: -0.21 Total: 32.20 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 5.09 Total: 8.58 kcal Atomic # 7 Polarization: -101.96 SS G_CDS: -5.11 Total: -107.07 kcal Atomic # 8 Polarization: -55.45 SS G_CDS: -3.17 Total: -58.62 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 1.90 Total: 40.76 kcal Total: -82.65 -1.50 -84.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401735203.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.404 kcal (2) G-P(sol) polarization free energy of solvation -82.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds