Wall clock time and date at job start Mon Mar 30 2020 05:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42895 * 114.00390 * 2 1 4 4 C 1.53004 * 110.28522 * 307.00360 * 3 2 1 5 5 O 1.42903 * 109.46772 * 301.57186 * 4 3 2 6 6 C 1.54259 * 110.33015 * 184.87185 * 3 2 1 7 7 C 1.54379 * 105.06372 * 241.10371 * 6 3 2 8 8 N 1.48565 * 104.59253 * 23.84877 * 7 6 3 9 9 C 1.46900 * 110.99952 * 200.95715 * 8 7 6 10 10 C 1.50692 * 109.47409 * 290.13151 * 9 8 7 11 11 O 1.21287 * 120.00001 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00212 * 180.02562 * 10 9 8 13 13 C 1.46504 * 120.00172 * 179.97438 * 12 10 9 14 14 C 1.50697 * 109.46899 * 179.97438 * 13 12 10 15 15 H 1.07989 * 120.00293 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99538 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00115 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99881 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.46745 * 60.00226 * 18 16 14 20 20 H 1.48493 * 109.47317 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47423 * 300.00455 * 18 16 14 22 22 C 1.48560 * 104.22164 * 320.51983 * 8 7 6 23 23 H 1.09004 * 109.47078 * 185.81329 * 1 2 3 24 24 H 1.09000 * 109.47175 * 305.80965 * 1 2 3 25 25 H 1.09001 * 109.47073 * 65.81336 * 1 2 3 26 26 H 1.08999 * 109.47390 * 61.57766 * 4 3 2 27 27 H 1.08998 * 109.47205 * 181.58093 * 4 3 2 28 28 H 0.96702 * 113.99934 * 179.97438 * 5 4 3 29 29 H 1.08999 * 110.31938 * 0.02562 * 6 3 2 30 30 H 1.09001 * 110.32113 * 122.10073 * 6 3 2 31 31 H 1.09001 * 110.41063 * 142.62973 * 7 6 3 32 32 H 1.08993 * 110.40908 * 265.07270 * 7 6 3 33 33 H 1.09007 * 109.46805 * 50.13119 * 9 8 7 34 34 H 1.08993 * 109.46865 * 170.12540 * 9 8 7 35 35 H 0.96994 * 119.99667 * 359.97438 * 12 10 9 36 36 H 1.08994 * 109.46906 * 299.99932 * 13 12 10 37 37 H 1.09004 * 109.46866 * 59.99751 * 13 12 10 38 38 H 0.97009 * 120.00024 * 179.97438 * 17 16 14 39 39 H 1.08997 * 110.40898 * 280.69929 * 22 8 7 40 40 H 1.09003 * 110.40802 * 158.26122 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.4370 2.1413 -1.1461 5 8 1.6923 1.4841 -2.3890 6 6 3.5449 1.2087 -0.1228 7 6 4.0923 1.8569 1.1669 8 7 2.9843 1.7308 2.1486 9 6 3.1331 2.7047 3.2382 10 6 4.3094 2.3206 4.0982 11 8 4.9597 1.3326 3.8300 12 7 4.6384 3.0745 5.1659 13 6 5.7817 2.7009 6.0022 14 6 5.9342 3.7001 7.1199 15 1 5.2480 4.5301 7.1996 16 6 6.9494 3.5539 8.0414 17 7 7.7848 2.5428 7.9446 18 14 7.1381 4.7920 9.4274 19 1 5.9034 4.8033 10.2525 20 1 8.2970 4.4134 10.2750 21 1 7.3640 6.1440 8.8561 22 6 1.7595 2.0040 1.3536 23 1 -0.3633 -1.0224 0.1041 24 1 -0.3633 0.6013 0.8334 25 1 -0.3633 0.4210 -0.9375 26 1 0.3616 2.2559 -1.0098 27 1 1.9093 3.1236 -1.1509 28 1 1.3554 1.9585 -3.1614 29 1 3.8547 0.1654 -0.1836 30 1 3.8897 1.7566 -0.9997 31 1 4.9739 1.3203 1.5175 32 1 4.3290 2.9066 0.9937 33 1 3.2983 3.6970 2.8185 34 1 2.2272 2.7128 3.8443 35 1 4.1181 3.8645 5.3805 36 1 5.6162 1.7085 6.4215 37 1 6.6878 2.6928 5.3963 38 1 8.4992 2.4402 8.5928 39 1 1.6312 3.0768 1.2098 40 1 0.8846 1.5781 1.8449 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401844330.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:49 Heat of formation + Delta-G solvation = -117.706885 kcal Electronic energy + Delta-G solvation = -21344.042569 eV Core-core repulsion = 17966.352773 eV Total energy + Delta-G solvation = -3377.689796 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.25194 -38.70924 -36.77814 -36.27579 -34.10799 -32.37389 -31.92291 -29.31446 -28.16776 -26.98285 -26.42665 -24.36432 -22.51907 -21.28428 -20.23681 -19.53964 -17.68818 -17.18682 -17.09166 -16.13919 -15.80947 -15.46439 -15.19081 -14.86189 -14.82606 -14.33730 -14.03445 -13.74630 -13.56937 -13.14673 -12.70285 -12.46959 -12.20361 -12.07420 -11.88059 -11.79060 -11.55596 -11.31074 -11.12597 -10.98551 -10.84089 -10.63783 -10.34871 -10.29147 -9.68373 -9.39896 -9.01487 -8.71749 -8.37799 -7.83797 -6.15375 -4.22513 3.25392 3.30061 3.31612 3.39136 3.41713 3.68394 3.99078 4.21425 4.37286 4.48798 4.58869 4.75368 4.94600 4.99281 5.09343 5.14759 5.20277 5.21119 5.23408 5.38822 5.41662 5.49659 5.58852 5.61872 5.67136 5.83281 6.08811 6.25906 6.78117 6.88677 7.16109 7.25093 7.34304 7.47562 7.54591 7.68887 7.98806 8.65711 8.80675 9.15464 9.44261 10.94774 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.049647 B = 0.003060 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.841279 B = 9148.590647 C = 9195.336108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.355 6.355 3 C 0.117 3.883 4 C 0.055 3.945 5 O -0.558 6.558 6 C -0.105 4.105 7 C 0.032 3.968 8 N -0.480 5.480 9 C 0.023 3.977 10 C 0.499 3.501 11 O -0.536 6.536 12 N -0.716 5.716 13 C 0.252 3.748 14 C -0.544 4.544 15 H 0.062 0.938 16 C 0.064 3.936 17 N -0.885 5.885 18 Si 0.904 3.096 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.276 1.276 22 C 0.010 3.990 23 H 0.085 0.915 24 H 0.041 0.959 25 H 0.040 0.960 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.377 0.623 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.041 0.959 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.389 0.611 36 H 0.027 0.973 37 H 0.026 0.974 38 H 0.266 0.734 39 H 0.051 0.949 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.876 2.772 -18.073 24.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.273 6.273 3 C 0.077 3.923 4 C -0.024 4.024 5 O -0.362 6.362 6 C -0.142 4.142 7 C -0.095 4.095 8 N -0.203 5.203 9 C -0.109 4.109 10 C 0.283 3.717 11 O -0.413 6.413 12 N -0.365 5.365 13 C 0.131 3.869 14 C -0.583 4.583 15 H 0.080 0.920 16 C -0.140 4.140 17 N -0.522 5.522 18 Si 0.731 3.269 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.118 4.118 23 H 0.103 0.897 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.223 0.777 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.122 0.878 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.117 0.883 35 H 0.221 0.779 36 H 0.045 0.955 37 H 0.044 0.956 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.817 0.824 -17.481 22.931 hybrid contribution -0.674 2.627 0.312 2.730 sum -15.491 3.451 -17.170 23.381 Atomic orbital electron populations 1.22768 0.82004 1.02759 0.99516 1.88091 1.18976 1.25741 1.94491 1.22219 0.95085 0.83769 0.91242 1.22796 0.99114 0.95307 0.85137 1.86588 1.82822 1.51381 1.15429 1.22290 0.91016 1.03558 0.97381 1.23293 0.96364 0.99209 0.90662 1.65171 1.01408 1.46083 1.07682 1.22242 0.99484 0.94347 0.94785 1.20198 0.85400 0.84161 0.81957 1.90658 1.53168 1.26469 1.71051 1.46440 1.33657 1.28338 1.28098 1.19073 0.82844 0.96396 0.88568 1.21191 1.14695 1.11039 1.11336 0.92000 1.24954 0.95337 0.95782 0.97945 1.69967 1.16685 1.29276 1.36316 0.86477 0.77751 0.81140 0.81536 1.20071 1.21059 1.20107 1.23656 0.95797 0.98542 0.93812 0.89670 0.94049 0.94166 0.93231 0.92595 0.77692 0.89286 0.90136 0.87769 0.94080 0.92236 0.88287 0.77904 0.95533 0.95633 0.92379 0.93062 0.89133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.08 101.05 1.02 1.26 16 2 O -0.35 -4.73 10.21 -44.84 -0.46 -5.19 16 3 C 0.12 1.36 0.86 -89.24 -0.08 1.28 16 4 C 0.06 0.47 5.02 37.16 0.19 0.65 16 5 O -0.56 -5.00 13.20 -44.84 -0.59 -5.60 16 6 C -0.10 -1.33 6.27 -25.35 -0.16 -1.49 16 7 C 0.03 0.47 5.80 -2.18 -0.01 0.46 16 8 N -0.48 -7.21 5.06 -231.41 -1.17 -8.38 16 9 C 0.02 0.34 5.30 -4.98 -0.03 0.31 16 10 C 0.50 10.09 7.63 -10.99 -0.08 10.01 16 11 O -0.54 -13.15 14.84 5.55 0.08 -13.06 16 12 N -0.72 -15.12 5.55 -61.47 -0.34 -15.46 16 13 C 0.25 6.74 5.43 -5.19 -0.03 6.71 16 14 C -0.54 -14.83 9.28 -34.44 -0.32 -15.15 16 15 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 18 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 C 0.01 0.12 5.57 -2.18 -0.01 0.11 16 23 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.04 0.34 6.45 -51.93 -0.33 0.00 16 25 H 0.04 0.33 6.78 -51.93 -0.35 -0.02 16 26 H 0.05 0.34 6.78 -51.93 -0.35 -0.01 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.38 1.52 9.12 45.56 0.42 1.93 16 29 H 0.09 1.27 7.98 -51.93 -0.41 0.86 16 30 H 0.08 0.89 7.59 -51.93 -0.39 0.50 16 31 H 0.10 1.82 6.91 -51.93 -0.36 1.46 16 32 H 0.04 0.53 7.82 -51.93 -0.41 0.13 16 33 H 0.06 0.73 7.88 -51.93 -0.41 0.32 16 34 H 0.10 1.24 8.13 -51.93 -0.42 0.82 16 35 H 0.39 6.94 8.32 -40.82 -0.34 6.60 16 36 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.05 0.47 7.72 -51.93 -0.40 0.07 16 40 H 0.09 0.98 6.41 -51.93 -0.33 0.65 16 LS Contribution 326.07 15.07 4.91 4.91 Total: -1.00 -35.10 326.07 -6.79 -41.89 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -5.33 Total: 4.74 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 0.39 Total: 5.82 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: -0.78 Total: -49.38 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.97 Total: -23.85 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.10 -6.79 -41.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401844330.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.816 kcal (2) G-P(sol) polarization free energy of solvation -35.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds