Wall clock time and date at job start Mon Mar 30 2020 05:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42895 * 114.00390 * 2 1 4 4 C 1.53004 * 110.28522 * 307.00360 * 3 2 1 5 5 O 1.42903 * 109.46772 * 301.57186 * 4 3 2 6 6 C 1.54259 * 110.33015 * 184.87185 * 3 2 1 7 7 C 1.54379 * 105.06372 * 241.10371 * 6 3 2 8 8 N 1.48565 * 104.59253 * 23.84877 * 7 6 3 9 9 C 1.46900 * 110.99952 * 200.95715 * 8 7 6 10 10 C 1.50692 * 109.47409 * 290.13151 * 9 8 7 11 11 O 1.21287 * 120.00001 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00212 * 180.02562 * 10 9 8 13 13 C 1.46504 * 120.00172 * 179.97438 * 12 10 9 14 14 C 1.50697 * 109.46899 * 179.97438 * 13 12 10 15 15 H 1.07989 * 120.00293 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99538 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00115 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99881 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.46745 * 60.00226 * 18 16 14 20 20 H 1.48493 * 109.47317 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47423 * 300.00455 * 18 16 14 22 22 C 1.48560 * 104.22164 * 320.51983 * 8 7 6 23 23 H 1.09004 * 109.47078 * 185.81329 * 1 2 3 24 24 H 1.09000 * 109.47175 * 305.80965 * 1 2 3 25 25 H 1.09001 * 109.47073 * 65.81336 * 1 2 3 26 26 H 1.08999 * 109.47390 * 61.57766 * 4 3 2 27 27 H 1.08998 * 109.47205 * 181.58093 * 4 3 2 28 28 H 0.96702 * 113.99934 * 179.97438 * 5 4 3 29 29 H 1.08999 * 110.31938 * 0.02562 * 6 3 2 30 30 H 1.09001 * 110.32113 * 122.10073 * 6 3 2 31 31 H 1.09001 * 110.41063 * 142.62973 * 7 6 3 32 32 H 1.08993 * 110.40908 * 265.07270 * 7 6 3 33 33 H 1.09007 * 109.46805 * 50.13119 * 9 8 7 34 34 H 1.08993 * 109.46865 * 170.12540 * 9 8 7 35 35 H 0.96994 * 119.99667 * 359.97438 * 12 10 9 36 36 H 1.08994 * 109.46906 * 299.99932 * 13 12 10 37 37 H 1.09004 * 109.46866 * 59.99751 * 13 12 10 38 38 H 0.97009 * 120.00024 * 179.97438 * 17 16 14 39 39 H 1.08997 * 110.40898 * 280.69929 * 22 8 7 40 40 H 1.09003 * 110.40802 * 158.26122 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.4370 2.1413 -1.1461 5 8 1.6923 1.4841 -2.3890 6 6 3.5449 1.2087 -0.1228 7 6 4.0923 1.8569 1.1669 8 7 2.9843 1.7308 2.1486 9 6 3.1331 2.7047 3.2382 10 6 4.3094 2.3206 4.0982 11 8 4.9597 1.3326 3.8300 12 7 4.6384 3.0745 5.1659 13 6 5.7817 2.7009 6.0022 14 6 5.9342 3.7001 7.1199 15 1 5.2480 4.5301 7.1996 16 6 6.9494 3.5539 8.0414 17 7 7.7848 2.5428 7.9446 18 14 7.1381 4.7920 9.4274 19 1 5.9034 4.8033 10.2525 20 1 8.2970 4.4134 10.2750 21 1 7.3640 6.1440 8.8561 22 6 1.7595 2.0040 1.3536 23 1 -0.3633 -1.0224 0.1041 24 1 -0.3633 0.6013 0.8334 25 1 -0.3633 0.4210 -0.9375 26 1 0.3616 2.2559 -1.0098 27 1 1.9093 3.1236 -1.1509 28 1 1.3554 1.9585 -3.1614 29 1 3.8547 0.1654 -0.1836 30 1 3.8897 1.7566 -0.9997 31 1 4.9739 1.3203 1.5175 32 1 4.3290 2.9066 0.9937 33 1 3.2983 3.6970 2.8185 34 1 2.2272 2.7128 3.8443 35 1 4.1181 3.8645 5.3805 36 1 5.6162 1.7085 6.4215 37 1 6.6878 2.6928 5.3963 38 1 8.4992 2.4402 8.5928 39 1 1.6312 3.0768 1.2098 40 1 0.8846 1.5781 1.8449 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401844330.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:48 Heat of formation + Delta-G solvation = -149.536163 kcal Electronic energy + Delta-G solvation = -21345.422790 eV Core-core repulsion = 17966.352773 eV Total energy + Delta-G solvation = -3379.070017 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.25970 -40.19818 -37.77771 -37.01554 -36.06939 -34.34922 -33.03614 -30.22255 -29.85859 -27.93361 -27.64515 -25.44617 -24.33624 -22.48389 -21.38240 -20.93318 -18.92336 -18.29206 -18.01475 -17.50042 -17.33568 -16.70488 -16.53410 -16.13588 -15.99030 -15.68950 -15.29771 -14.99116 -14.51912 -14.39448 -13.98304 -13.95494 -13.79762 -13.19714 -13.02587 -12.98233 -12.89379 -12.67582 -12.53781 -12.29232 -12.25509 -12.19804 -11.51099 -11.44652 -10.96325 -10.78770 -10.69095 -10.44637 -9.81221 -9.44264 -8.28653 -6.45820 1.43068 1.47499 1.55741 1.81033 2.25908 2.44982 2.74276 3.05428 3.06073 3.25050 3.58181 3.72540 3.98424 4.06348 4.15276 4.27662 4.31640 4.38855 4.41332 4.42853 4.50128 4.53902 4.67775 4.76768 4.84858 4.92395 5.06380 5.11537 5.14630 5.24621 5.49549 5.69047 5.75701 5.85144 5.90764 6.38803 6.65598 6.90733 6.96333 7.24077 7.55343 8.83458 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.049647 B = 0.003060 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.841279 B = 9148.590647 C = 9195.336108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.392 6.392 3 C 0.111 3.889 4 C 0.060 3.940 5 O -0.582 6.582 6 C -0.102 4.102 7 C 0.035 3.965 8 N -0.514 5.514 9 C 0.039 3.961 10 C 0.493 3.507 11 O -0.588 6.588 12 N -0.709 5.709 13 C 0.269 3.731 14 C -0.557 4.557 15 H 0.086 0.914 16 C 0.002 3.998 17 N -0.933 5.933 18 Si 0.986 3.014 19 H -0.261 1.261 20 H -0.287 1.287 21 H -0.261 1.261 22 C 0.016 3.984 23 H 0.087 0.913 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.397 0.603 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.130 0.870 35 H 0.409 0.591 36 H -0.017 1.017 37 H -0.015 1.015 38 H 0.269 0.731 39 H 0.085 0.915 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.540 5.799 -18.435 26.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.311 6.311 3 C 0.071 3.929 4 C -0.018 4.018 5 O -0.390 6.390 6 C -0.140 4.140 7 C -0.093 4.093 8 N -0.239 5.239 9 C -0.092 4.092 10 C 0.280 3.720 11 O -0.468 6.468 12 N -0.360 5.360 13 C 0.146 3.854 14 C -0.594 4.594 15 H 0.104 0.896 16 C -0.198 4.198 17 N -0.571 5.571 18 Si 0.809 3.191 19 H -0.186 1.186 20 H -0.212 1.212 21 H -0.185 1.185 22 C -0.112 4.112 23 H 0.105 0.895 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.247 0.753 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.147 0.853 35 H 0.244 0.756 36 H 0.001 0.999 37 H 0.003 0.997 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.548 3.893 -17.884 25.356 hybrid contribution 0.151 1.584 0.344 1.628 sum -17.397 5.476 -17.539 25.304 Atomic orbital electron populations 1.22933 0.80211 1.03473 1.00819 1.88039 1.21113 1.27178 1.94814 1.22335 0.93787 0.83821 0.92933 1.22738 1.00305 0.94933 0.83805 1.86535 1.83370 1.52559 1.16520 1.22228 0.92871 1.01803 0.97064 1.23141 0.95127 0.99680 0.91335 1.65053 1.02967 1.47298 1.08569 1.22162 0.97239 0.95624 0.94203 1.21360 0.86277 0.82863 0.81546 1.90645 1.55251 1.28760 1.72134 1.46160 1.32499 1.29395 1.27982 1.18485 0.83402 0.94741 0.88794 1.21604 1.15210 1.11434 1.11177 0.89626 1.26106 0.94735 0.97872 1.01043 1.70145 1.17565 1.31720 1.37682 0.85188 0.77968 0.78399 0.77540 1.18582 1.21214 1.18508 1.23709 0.93894 1.00604 0.92965 0.89463 0.92684 0.92738 0.91062 0.90715 0.75262 0.92193 0.88519 0.92251 0.92246 0.88663 0.85267 0.75557 0.99884 0.99707 0.92270 0.89661 0.88493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.08 113.37 1.14 1.50 16 2 O -0.39 -10.09 10.21 -139.79 -1.43 -11.51 16 3 C 0.11 2.35 0.86 -9.90 -0.01 2.34 16 4 C 0.06 0.81 5.02 71.98 0.36 1.17 16 5 O -0.58 -8.95 13.20 -139.79 -1.85 -10.79 16 6 C -0.10 -2.58 6.27 31.49 0.20 -2.38 16 7 C 0.03 1.02 5.80 86.45 0.50 1.52 16 8 N -0.51 -14.77 5.06 -886.06 -4.49 -19.26 16 9 C 0.04 1.03 5.30 85.55 0.45 1.48 16 10 C 0.49 20.08 7.63 87.65 0.67 20.75 16 11 O -0.59 -30.40 14.84 -3.05 -0.05 -30.44 16 12 N -0.71 -30.06 5.55 -466.79 -2.59 -32.65 16 13 C 0.27 15.01 5.43 85.63 0.46 15.48 16 14 C -0.56 -30.43 9.28 25.60 0.24 -30.19 16 15 H 0.09 4.17 7.60 -2.92 -0.02 4.15 16 16 C 0.00 0.11 5.46 84.66 0.46 0.57 16 17 N -0.93 -57.08 13.29 21.45 0.28 -56.79 16 18 Si 0.99 42.35 29.54 68.60 2.03 44.38 16 19 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 20 H -0.29 -12.27 7.11 99.48 0.71 -11.57 16 21 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 22 C 0.02 0.31 5.57 86.45 0.48 0.79 16 23 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 24 H 0.05 0.75 6.45 -2.39 -0.02 0.73 16 25 H 0.05 0.74 6.78 -2.39 -0.02 0.72 16 26 H 0.07 0.65 6.78 -2.39 -0.02 0.64 16 27 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.40 2.05 9.12 -74.06 -0.68 1.37 16 29 H 0.06 1.83 7.98 -2.39 -0.02 1.81 16 30 H 0.10 2.06 7.59 -2.39 -0.02 2.04 16 31 H 0.06 2.24 6.91 -2.39 -0.02 2.22 16 32 H 0.06 1.46 7.82 -2.39 -0.02 1.44 16 33 H 0.10 1.92 7.88 -2.38 -0.02 1.90 16 34 H 0.13 2.71 8.13 -2.39 -0.02 2.69 16 35 H 0.41 13.87 8.32 -92.71 -0.77 13.10 16 36 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 37 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 38 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 39 H 0.09 1.10 7.72 -2.39 -0.02 1.08 16 40 H 0.10 1.76 6.41 -2.39 -0.02 1.74 16 Total: -1.00 -81.54 326.07 -3.51 -85.05 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -0.39 Total: 18.99 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: 4.96 Total: 13.02 kcal Atomic # 7 Polarization: -101.91 SS G_CDS: -6.79 Total: -108.70 kcal Atomic # 8 Polarization: -49.43 SS G_CDS: -3.32 Total: -52.75 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -81.54 -3.51 -85.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401844330.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.491 kcal (2) G-P(sol) polarization free energy of solvation -81.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds