Wall clock time and date at job start Mon Mar 30 2020 04:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00039 * 2 1 4 4 H 1.48502 * 109.47276 * 240.00615 * 3 2 1 5 5 H 1.48500 * 109.47177 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46862 * 120.00544 * 3 2 1 7 7 C 1.37876 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99978 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99977 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47230 * 180.02562 * 9 7 2 11 11 C 1.34778 * 120.00201 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00182 * 0.02562 * 11 10 9 13 13 C 1.50702 * 120.00014 * 179.97438 * 11 10 9 14 14 N 1.46897 * 109.47304 * 179.97438 * 13 11 10 15 15 C 1.46894 * 111.00279 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.47134 * 180.02562 * 15 14 13 17 17 C 1.53002 * 109.47409 * 180.02562 * 16 15 14 18 18 O 1.42905 * 110.56536 * 66.21838 * 17 16 15 19 19 C 1.54507 * 110.51563 * 188.90430 * 17 16 15 20 20 C 1.54477 * 104.06510 * 118.64085 * 19 17 16 21 21 O 1.44688 * 104.83958 * 23.98057 * 20 19 17 22 22 C 1.44428 * 105.13885 * 319.51776 * 21 20 19 23 23 H 0.96994 * 119.99816 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47032 * 60.00588 * 9 7 2 25 25 H 1.08995 * 109.47596 * 300.00076 * 9 7 2 26 26 H 0.96999 * 119.99916 * 359.97438 * 10 9 7 27 27 H 1.09004 * 109.46905 * 60.00143 * 13 11 10 28 28 H 1.08999 * 109.47521 * 300.00181 * 13 11 10 29 29 H 1.00901 * 110.99578 * 56.04422 * 14 13 11 30 30 H 1.08996 * 109.47055 * 60.00361 * 15 14 13 31 31 H 1.08999 * 109.47193 * 299.99829 * 15 14 13 32 32 H 1.09001 * 109.47566 * 59.99905 * 16 15 14 33 33 H 1.09004 * 109.47099 * 299.99983 * 16 15 14 34 34 H 0.96693 * 113.99736 * 178.02366 * 18 17 16 35 35 H 1.09000 * 110.50930 * 237.29024 * 19 17 16 36 36 H 1.09006 * 110.50971 * 359.97438 * 19 17 16 37 37 H 1.08996 * 110.37125 * 142.80919 * 20 19 17 38 38 H 1.08999 * 110.37544 * 265.03608 * 20 19 17 39 39 H 1.09002 * 110.37130 * 281.60836 * 22 21 20 40 40 H 1.08999 * 110.37385 * 159.38239 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 1.7538 -4.8833 -0.0011 12 8 0.5614 -5.1050 -0.0020 13 6 2.7331 -6.0288 -0.0016 14 7 1.9987 -7.3010 -0.0015 15 6 2.9231 -8.4426 -0.0015 16 6 2.1230 -9.7467 -0.0020 17 6 3.0858 -10.9358 -0.0013 18 8 3.8202 -10.9864 1.2236 19 6 2.3156 -12.2563 -0.2258 20 6 2.9041 -12.8154 -1.5401 21 8 4.2193 -12.2204 -1.6398 22 6 4.0486 -10.8533 -1.2066 23 1 -0.4849 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6247 -2.5571 0.8896 26 1 3.1567 -3.4354 -0.0009 27 1 3.3598 -5.9714 0.8884 28 1 3.3597 -5.9707 -0.8916 29 1 1.3619 -7.3509 -0.7826 30 1 3.5510 -8.4015 0.8885 31 1 3.5510 -8.4017 -0.8915 32 1 1.4953 -9.7876 -0.8921 33 1 1.4947 -9.7879 0.8878 34 1 4.4237 -11.7389 1.2895 35 1 2.4949 -12.9477 0.5976 36 1 1.2488 -12.0620 -0.3368 37 1 2.9822 -13.9013 -1.4891 38 1 2.2869 -12.5194 -2.3884 39 1 3.6080 -10.2547 -2.0039 40 1 5.0052 -10.4302 -0.8998 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404194575.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:04 Heat of formation + Delta-G solvation = -139.232704 kcal Electronic energy + Delta-G solvation = -20493.814144 eV Core-core repulsion = 17115.190919 eV Total energy + Delta-G solvation = -3378.623225 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.46426 -38.84444 -36.77067 -35.74179 -34.12038 -32.54356 -32.27366 -30.69946 -28.47473 -27.22117 -25.36327 -23.74365 -22.41982 -21.93473 -20.74542 -19.63561 -17.78956 -17.26844 -16.58165 -16.36269 -15.88675 -15.64830 -15.21156 -14.98775 -14.80394 -14.48331 -14.16136 -13.89552 -13.69014 -13.19507 -13.13084 -12.75373 -12.31816 -12.03085 -11.91846 -11.83054 -11.59580 -11.55636 -11.33758 -11.00700 -10.93042 -10.84977 -10.68238 -10.31322 -9.95994 -9.40516 -9.03526 -8.72363 -8.37983 -7.85586 -6.15837 -4.22904 3.25640 3.30345 3.31846 3.40019 3.44342 3.75491 3.77063 4.08212 4.26606 4.29435 4.43375 4.56488 4.65319 4.77499 4.97548 5.04499 5.16950 5.20011 5.21558 5.28131 5.37684 5.39900 5.49438 5.51769 5.56867 5.64630 5.90074 5.92465 6.26480 6.89553 7.24464 7.32397 7.38876 7.46204 7.53365 7.68186 7.98196 8.64655 8.79477 9.13014 9.43776 10.94360 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.052329 B = 0.002465 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.951154 B =11358.083266 C =11516.521672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.251 3.749 10 N -0.715 5.715 11 C 0.496 3.504 12 O -0.544 6.544 13 C 0.041 3.959 14 N -0.673 5.673 15 C 0.061 3.939 16 C -0.099 4.099 17 C 0.108 3.892 18 O -0.547 6.547 19 C -0.185 4.185 20 C 0.041 3.959 21 O -0.377 6.377 22 C 0.014 3.986 23 H 0.266 0.734 24 H 0.026 0.974 25 H 0.027 0.973 26 H 0.390 0.610 27 H 0.097 0.903 28 H 0.053 0.947 29 H 0.349 0.651 30 H 0.081 0.919 31 H 0.027 0.973 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.379 0.621 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.829 -24.345 -2.210 25.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.130 3.870 10 N -0.364 5.364 11 C 0.280 3.720 12 O -0.422 6.422 13 C -0.092 4.092 14 N -0.305 5.305 15 C -0.069 4.069 16 C -0.137 4.137 17 C 0.066 3.934 18 O -0.353 6.353 19 C -0.223 4.223 20 C -0.036 4.036 21 O -0.295 6.295 22 C -0.063 4.063 23 H 0.076 0.924 24 H 0.044 0.956 25 H 0.045 0.955 26 H 0.222 0.778 27 H 0.115 0.885 28 H 0.071 0.929 29 H 0.168 0.832 30 H 0.100 0.900 31 H 0.045 0.955 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.227 0.773 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.548 -23.902 -1.485 25.109 hybrid contribution 1.337 0.643 -0.988 1.782 sum 8.885 -23.259 -2.473 25.021 Atomic orbital electron populations 1.69965 1.06111 1.27413 1.48812 1.24959 0.94924 0.99457 0.94712 0.86467 0.79405 0.82302 0.78678 1.20089 1.21071 1.20052 1.21194 0.93223 0.90495 1.53314 0.91961 1.19084 0.88299 0.81913 0.97703 1.46448 1.11090 1.06124 1.72720 1.20359 0.89538 0.84251 0.77834 1.90659 1.16694 1.84720 1.50161 1.21833 0.95668 0.89392 1.02287 1.60061 1.18999 1.00096 1.51373 1.21973 0.94391 0.89488 1.01018 1.21523 0.96816 0.91371 1.04012 1.22539 0.91178 0.94947 0.84764 1.86586 1.59069 1.52308 1.37313 1.23710 1.01979 0.97510 0.99103 1.23498 0.84430 0.99092 0.96550 1.89218 1.28515 1.23900 1.87905 1.24305 1.01179 0.84552 0.96231 0.92387 0.95623 0.95529 0.77779 0.88532 0.92884 0.83185 0.90028 0.95483 0.90335 0.89426 0.77344 0.89610 0.89178 0.88847 0.91834 0.91066 0.88043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.54 -14.84 9.28 -34.44 -0.32 -15.16 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.25 6.71 5.43 -5.20 -0.03 6.68 16 10 N -0.71 -15.10 5.55 -61.47 -0.34 -15.44 16 11 C 0.50 9.95 7.87 -10.98 -0.09 9.86 16 12 O -0.54 -13.23 16.20 5.56 0.09 -13.14 16 13 C 0.04 0.58 6.17 -4.98 -0.03 0.55 16 14 N -0.67 -9.26 6.13 -115.06 -0.70 -9.96 16 15 C 0.06 0.64 5.32 -3.83 -0.02 0.62 16 16 C -0.10 -0.90 4.50 -26.73 -0.12 -1.02 16 17 C 0.11 0.84 1.12 -89.05 -0.10 0.74 16 18 O -0.55 -4.67 12.68 -35.23 -0.45 -5.12 16 19 C -0.19 -1.16 6.50 -25.17 -0.16 -1.33 16 20 C 0.04 0.26 7.63 37.93 0.29 0.55 16 21 O -0.38 -3.37 11.67 -35.23 -0.41 -3.78 16 22 C 0.01 0.11 5.78 37.94 0.22 0.33 16 23 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.39 6.99 8.32 -40.82 -0.34 6.65 16 27 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.35 4.85 8.43 -39.29 -0.33 4.52 16 30 H 0.08 0.93 7.91 -51.93 -0.41 0.51 16 31 H 0.03 0.25 6.88 -51.93 -0.36 -0.11 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.38 2.02 9.04 45.56 0.41 2.43 16 35 H 0.09 0.49 8.00 -51.93 -0.42 0.08 16 36 H 0.09 0.52 7.73 -51.93 -0.40 0.12 16 37 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.53 7.42 -51.93 -0.39 0.15 16 40 H 0.10 0.76 8.09 -51.93 -0.42 0.34 16 LS Contribution 334.27 15.07 5.04 5.04 Total: -1.00 -33.88 334.27 -7.08 -40.96 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -5.57 Total: 7.59 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -0.46 Total: 3.49 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: -0.31 Total: -50.93 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.77 Total: -22.04 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.88 -7.08 -40.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404194575.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.271 kcal (2) G-P(sol) polarization free energy of solvation -33.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds