Wall clock time and date at job start Mon Mar 30 2020 04:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00039 * 2 1 4 4 H 1.48502 * 109.47276 * 240.00615 * 3 2 1 5 5 H 1.48500 * 109.47177 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46862 * 120.00544 * 3 2 1 7 7 C 1.37876 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99978 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99977 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47230 * 180.02562 * 9 7 2 11 11 C 1.34778 * 120.00201 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00182 * 0.02562 * 11 10 9 13 13 C 1.50702 * 120.00014 * 179.97438 * 11 10 9 14 14 N 1.46897 * 109.47304 * 179.97438 * 13 11 10 15 15 C 1.46894 * 111.00279 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.47134 * 180.02562 * 15 14 13 17 17 C 1.53002 * 109.47409 * 180.02562 * 16 15 14 18 18 O 1.42905 * 110.56536 * 66.21838 * 17 16 15 19 19 C 1.54507 * 110.51563 * 188.90430 * 17 16 15 20 20 C 1.54477 * 104.06510 * 118.64085 * 19 17 16 21 21 O 1.44688 * 104.83958 * 23.98057 * 20 19 17 22 22 C 1.44428 * 105.13885 * 319.51776 * 21 20 19 23 23 H 0.96994 * 119.99816 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47032 * 60.00588 * 9 7 2 25 25 H 1.08995 * 109.47596 * 300.00076 * 9 7 2 26 26 H 0.96999 * 119.99916 * 359.97438 * 10 9 7 27 27 H 1.09004 * 109.46905 * 60.00143 * 13 11 10 28 28 H 1.08999 * 109.47521 * 300.00181 * 13 11 10 29 29 H 1.00901 * 110.99578 * 56.04422 * 14 13 11 30 30 H 1.08996 * 109.47055 * 60.00361 * 15 14 13 31 31 H 1.08999 * 109.47193 * 299.99829 * 15 14 13 32 32 H 1.09001 * 109.47566 * 59.99905 * 16 15 14 33 33 H 1.09004 * 109.47099 * 299.99983 * 16 15 14 34 34 H 0.96693 * 113.99736 * 178.02366 * 18 17 16 35 35 H 1.09000 * 110.50930 * 237.29024 * 19 17 16 36 36 H 1.09006 * 110.50971 * 359.97438 * 19 17 16 37 37 H 1.08996 * 110.37125 * 142.80919 * 20 19 17 38 38 H 1.08999 * 110.37544 * 265.03608 * 20 19 17 39 39 H 1.09002 * 110.37130 * 281.60836 * 22 21 20 40 40 H 1.08999 * 110.37385 * 159.38239 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 1.7538 -4.8833 -0.0011 12 8 0.5614 -5.1050 -0.0020 13 6 2.7331 -6.0288 -0.0016 14 7 1.9987 -7.3010 -0.0015 15 6 2.9231 -8.4426 -0.0015 16 6 2.1230 -9.7467 -0.0020 17 6 3.0858 -10.9358 -0.0013 18 8 3.8202 -10.9864 1.2236 19 6 2.3156 -12.2563 -0.2258 20 6 2.9041 -12.8154 -1.5401 21 8 4.2193 -12.2204 -1.6398 22 6 4.0486 -10.8533 -1.2066 23 1 -0.4849 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6247 -2.5571 0.8896 26 1 3.1567 -3.4354 -0.0009 27 1 3.3598 -5.9714 0.8884 28 1 3.3597 -5.9707 -0.8916 29 1 1.3619 -7.3509 -0.7826 30 1 3.5510 -8.4015 0.8885 31 1 3.5510 -8.4017 -0.8915 32 1 1.4953 -9.7876 -0.8921 33 1 1.4947 -9.7879 0.8878 34 1 4.4237 -11.7389 1.2895 35 1 2.4949 -12.9477 0.5976 36 1 1.2488 -12.0620 -0.3368 37 1 2.9822 -13.9013 -1.4891 38 1 2.2869 -12.5194 -2.3884 39 1 3.6080 -10.2547 -2.0039 40 1 5.0052 -10.4302 -0.8998 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404194575.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:04 Heat of formation + Delta-G solvation = -169.561384 kcal Electronic energy + Delta-G solvation = -20495.129294 eV Core-core repulsion = 17115.190919 eV Total energy + Delta-G solvation = -3379.938376 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.06375 -40.48291 -37.54681 -36.67730 -36.03693 -34.34354 -33.27060 -31.38572 -29.86973 -28.52181 -26.58958 -24.64734 -24.05047 -22.75151 -21.55453 -21.19370 -18.99281 -18.37193 -17.67620 -17.23982 -17.13670 -17.04766 -16.63904 -16.17328 -15.68746 -15.56501 -15.44489 -14.95277 -14.65691 -14.31335 -14.15157 -14.04055 -13.80799 -13.68890 -13.11533 -12.93633 -12.67710 -12.59516 -12.46544 -12.23708 -12.21008 -12.10833 -11.62817 -11.50996 -11.25032 -10.79090 -10.73397 -10.53521 -9.82580 -9.38938 -8.28874 -6.45738 1.43274 1.47503 1.55672 1.78735 2.28833 2.48970 2.91448 3.05774 3.21379 3.26986 3.53103 3.71142 3.89988 4.02208 4.07277 4.17586 4.28107 4.28729 4.41069 4.49670 4.56217 4.68836 4.76834 4.79821 4.92615 5.02368 5.10926 5.13802 5.18051 5.24515 5.48914 5.68588 5.72696 5.85008 5.95141 6.33824 6.65397 6.78342 6.94265 7.23768 7.51948 8.83174 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.052329 B = 0.002465 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.951154 B =11358.083266 C =11516.521672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.986 3.014 4 H -0.261 1.261 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.557 4.557 8 H 0.085 0.915 9 C 0.267 3.733 10 N -0.709 5.709 11 C 0.492 3.508 12 O -0.592 6.592 13 C 0.057 3.943 14 N -0.693 5.693 15 C 0.066 3.934 16 C -0.097 4.097 17 C 0.110 3.890 18 O -0.563 6.563 19 C -0.181 4.181 20 C 0.038 3.962 21 O -0.396 6.396 22 C 0.016 3.984 23 H 0.269 0.731 24 H -0.013 1.013 25 H -0.015 1.015 26 H 0.409 0.591 27 H 0.118 0.882 28 H 0.087 0.913 29 H 0.346 0.654 30 H 0.075 0.925 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.391 0.609 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.210 -24.807 -2.563 27.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.595 4.595 8 H 0.103 0.897 9 C 0.144 3.856 10 N -0.360 5.360 11 C 0.279 3.721 12 O -0.473 6.473 13 C -0.075 4.075 14 N -0.325 5.325 15 C -0.062 4.062 16 C -0.135 4.135 17 C 0.068 3.932 18 O -0.371 6.371 19 C -0.219 4.219 20 C -0.038 4.038 21 O -0.315 6.315 22 C -0.061 4.061 23 H 0.078 0.922 24 H 0.005 0.995 25 H 0.003 0.997 26 H 0.244 0.756 27 H 0.135 0.865 28 H 0.104 0.896 29 H 0.165 0.835 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.241 0.759 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.125 0.875 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 9.991 -24.411 -1.835 26.441 hybrid contribution 0.554 0.692 -0.867 1.240 sum 10.545 -23.720 -2.703 26.098 Atomic orbital electron populations 1.70135 1.08302 1.28636 1.49935 1.26092 0.95793 1.03982 0.93861 0.85194 0.77889 0.76530 0.79519 1.18564 1.21142 1.18678 1.21600 0.94334 0.90586 1.52949 0.89745 1.18516 0.88725 0.84394 0.93978 1.46186 1.11207 1.05537 1.73058 1.21449 0.89969 0.84965 0.75723 1.90636 1.19354 1.85409 1.51937 1.21747 0.94015 0.86998 1.04759 1.60060 1.20063 1.00713 1.51697 1.21973 0.94042 0.88718 1.01506 1.21498 0.96922 0.91362 1.03711 1.22473 0.91077 0.95013 0.84623 1.86548 1.59583 1.53323 1.37686 1.23684 1.02057 0.96795 0.99352 1.23646 0.83574 0.99859 0.96714 1.89198 1.29908 1.24395 1.88044 1.24304 1.01251 0.84365 0.96203 0.92248 0.99461 0.99720 0.75552 0.86451 0.89557 0.83500 0.90670 0.93583 0.89272 0.91152 0.75876 0.89009 0.88675 0.87483 0.91213 0.90705 0.87901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.62 13.29 21.45 0.28 -56.34 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.99 42.36 29.54 68.60 2.03 44.38 16 4 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 5 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 7 C -0.56 -30.42 9.28 25.60 0.24 -30.18 16 8 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 9 C 0.27 14.80 5.43 85.63 0.46 15.27 16 10 N -0.71 -29.96 5.55 -466.79 -2.59 -32.55 16 11 C 0.49 19.68 7.87 87.66 0.69 20.37 16 12 O -0.59 -29.69 16.20 -3.03 -0.05 -29.74 16 13 C 0.06 1.51 6.17 85.56 0.53 2.03 16 14 N -0.69 -18.12 6.13 -517.95 -3.17 -21.29 16 15 C 0.07 1.26 5.32 86.30 0.46 1.72 16 16 C -0.10 -1.63 4.50 30.59 0.14 -1.49 16 17 C 0.11 1.54 1.12 -9.78 -0.01 1.53 16 18 O -0.56 -8.80 12.68 -148.98 -1.89 -10.69 16 19 C -0.18 -1.96 6.50 31.61 0.21 -1.76 16 20 C 0.04 0.42 7.63 72.48 0.55 0.97 16 21 O -0.40 -6.41 11.67 -148.98 -1.74 -8.15 16 22 C 0.02 0.22 5.78 72.49 0.42 0.63 16 23 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 24 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 25 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 26 H 0.41 14.02 8.32 -92.71 -0.77 13.25 16 27 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 28 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.35 9.36 8.43 -89.69 -0.76 8.60 16 30 H 0.07 1.55 7.91 -2.39 -0.02 1.53 16 31 H 0.05 0.72 6.88 -2.39 -0.02 0.70 16 32 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.39 3.61 9.04 -74.06 -0.67 2.94 16 35 H 0.09 0.89 8.00 -2.39 -0.02 0.87 16 36 H 0.09 0.94 7.73 -2.38 -0.02 0.92 16 37 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.07 0.96 7.42 -2.39 -0.02 0.95 16 40 H 0.10 1.36 8.09 -2.39 -0.02 1.34 16 Total: -1.00 -75.40 334.27 -4.12 -79.52 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: -1.13 Total: 25.18 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: 4.14 Total: 9.68 kcal Atomic # 7 Polarization: -104.70 SS G_CDS: -5.48 Total: -110.18 kcal Atomic # 8 Polarization: -44.90 SS G_CDS: -3.68 Total: -48.58 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Total: -75.40 -4.12 -79.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404194575.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.043 kcal (2) G-P(sol) polarization free energy of solvation -75.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds