Wall clock time and date at job start Mon Mar 30 2020 05:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42902 * 114.00135 * 2 1 4 4 C 1.52998 * 109.47516 * 180.02562 * 3 2 1 5 5 N 1.46909 * 109.46881 * 64.05949 * 4 3 2 6 6 C 1.46898 * 110.99736 * 162.56835 * 5 4 3 7 7 C 1.50697 * 109.47139 * 199.26366 * 6 5 4 8 8 O 1.21290 * 120.00319 * 7.02136 * 7 6 5 9 9 N 1.34782 * 120.00133 * 187.02490 * 7 6 5 10 10 C 1.37096 * 119.99919 * 179.97438 * 9 7 6 11 11 H 1.08004 * 120.00038 * 0.02562 * 10 9 7 12 12 C 1.38952 * 120.00032 * 179.97438 * 10 9 7 13 13 N 1.31412 * 120.00013 * 180.27648 * 12 10 9 14 14 Si 1.86797 * 119.99763 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.47262 * 89.99514 * 14 12 10 16 16 H 1.48498 * 109.47458 * 209.99401 * 14 12 10 17 17 H 1.48496 * 109.47235 * 329.99897 * 14 12 10 18 18 C 1.46897 * 111.00282 * 286.52161 * 5 4 3 19 19 H 1.09001 * 110.45701 * 10.60448 * 18 5 4 20 20 C 1.54505 * 110.50980 * 133.20899 * 18 5 4 21 21 C 1.54479 * 104.06204 * 118.64928 * 20 18 5 22 22 O 1.44421 * 104.80457 * 23.97164 * 21 20 18 23 23 C 1.44644 * 105.37251 * 319.57469 * 22 21 20 24 24 H 1.09003 * 109.47457 * 60.00148 * 1 2 3 25 25 H 1.09000 * 109.47015 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46819 * 299.99462 * 1 2 3 27 27 H 1.09000 * 109.46719 * 60.00142 * 3 2 1 28 28 H 1.09002 * 109.47052 * 300.00387 * 3 2 1 29 29 H 1.08997 * 109.46919 * 304.06438 * 4 3 2 30 30 H 1.08997 * 109.47383 * 184.05883 * 4 3 2 31 31 H 1.09004 * 109.47070 * 79.26024 * 6 5 4 32 32 H 1.09010 * 109.47103 * 319.26177 * 6 5 4 33 33 H 0.97002 * 119.99894 * 359.97438 * 9 7 6 34 34 H 0.97002 * 119.99688 * 179.72563 * 13 12 10 35 35 H 1.09006 * 110.51151 * 237.29123 * 20 18 5 36 36 H 1.08994 * 110.51244 * 359.86152 * 20 18 5 37 37 H 1.09000 * 110.37291 * 142.81126 * 21 20 18 38 38 H 1.09003 * 110.36901 * 265.03323 * 21 20 18 39 39 H 1.09003 * 110.33639 * 281.58729 * 23 22 21 40 40 H 1.08997 * 110.50912 * 159.18739 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9752 0.5423 -1.2465 6 6 5.4069 0.7732 -1.4809 7 6 5.7228 0.5340 -2.9348 8 8 4.8256 0.3289 -3.7247 9 7 7.0026 0.5479 -3.3575 10 6 7.2900 0.3297 -4.6801 11 1 6.4910 0.1472 -5.3834 12 6 8.6093 0.3446 -5.1160 13 7 8.8845 0.1409 -6.3847 14 14 9.9913 0.6610 -3.8996 15 1 10.4546 -0.6298 -3.3299 16 1 11.1204 1.3284 -4.5958 17 1 9.4975 1.5358 -2.8060 18 6 3.6687 -0.8943 -1.2348 19 1 3.0192 -1.1384 -0.3941 20 6 3.0119 -1.3185 -2.5674 21 6 3.9938 -2.3554 -3.1564 22 8 4.7133 -2.8719 -2.0157 23 6 4.9696 -1.7248 -1.1726 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.6886 1.8463 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.8525 0.5821 0.8504 30 1 3.9786 2.1779 0.0721 31 1 5.9908 0.0894 -0.8648 32 1 5.6567 1.8015 -1.2191 33 1 7.7202 0.7122 -2.7258 34 1 9.8052 0.1552 -6.6896 35 1 2.0387 -1.7746 -2.3853 36 1 2.9124 -0.4619 -3.2339 37 1 3.4468 -3.1560 -3.6543 38 1 4.6798 -1.8748 -3.8539 39 1 5.8075 -1.1473 -1.5631 40 1 5.1698 -2.0406 -0.1487 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490053410.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:42 Heat of formation + Delta-G solvation = -82.377684 kcal Electronic energy + Delta-G solvation = -22785.081705 eV Core-core repulsion = 19408.923899 eV Total energy + Delta-G solvation = -3376.157807 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.07707 -37.99098 -37.67213 -35.79176 -33.86315 -31.67677 -30.93989 -30.20252 -27.87970 -26.93249 -25.83484 -24.12799 -22.43974 -21.62070 -19.99070 -19.08861 -18.14475 -16.81030 -16.65785 -16.09407 -15.88102 -15.63749 -15.14026 -14.75732 -14.57758 -14.18810 -13.69472 -13.52907 -13.28330 -12.96883 -12.48877 -12.36981 -12.17078 -12.08840 -11.66708 -11.53873 -11.35295 -11.18944 -10.97406 -10.84572 -10.58187 -10.37508 -9.96690 -9.94542 -9.67233 -9.51527 -9.11118 -8.44339 -8.12428 -7.87287 -6.27788 -3.78446 3.04244 3.09340 3.17357 3.71505 3.76067 3.81240 4.13330 4.56319 4.82051 4.93998 5.07431 5.16792 5.21099 5.26647 5.27466 5.30894 5.34757 5.46579 5.55652 5.62264 5.68400 5.78551 5.84551 5.85300 5.95335 5.99650 6.11709 6.35836 6.43744 6.75545 6.86769 7.06923 7.20236 7.25373 7.54581 7.62523 8.17872 8.64450 8.99605 9.46030 9.88363 10.85438 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.027279 B = 0.005464 C = 0.005104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.201239 B = 5123.487017 C = 5484.376446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.067 3.933 4 C 0.055 3.945 5 N -0.502 5.502 6 C 0.025 3.975 7 C 0.453 3.547 8 O -0.547 6.547 9 N -0.594 5.594 10 C -0.300 4.300 11 H 0.120 0.880 12 C 0.042 3.958 13 N -0.882 5.882 14 Si 0.877 3.123 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.270 1.270 18 C 0.062 3.938 19 H 0.100 0.900 20 C -0.128 4.128 21 C 0.042 3.958 22 O -0.382 6.382 23 C 0.006 3.994 24 H 0.041 0.959 25 H 0.082 0.918 26 H 0.035 0.965 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.041 0.959 30 H 0.087 0.913 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.368 0.632 34 H 0.272 0.728 35 H 0.053 0.947 36 H 0.108 0.892 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.704 1.725 15.503 18.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.302 6.302 3 C -0.010 4.010 4 C -0.073 4.073 5 N -0.227 5.227 6 C -0.106 4.106 7 C 0.238 3.762 8 O -0.428 6.428 9 N -0.234 5.234 10 C -0.429 4.429 11 H 0.137 0.863 12 C -0.161 4.161 13 N -0.523 5.523 14 Si 0.704 3.296 15 H -0.197 1.197 16 H -0.203 1.203 17 H -0.196 1.196 18 C -0.046 4.046 19 H 0.118 0.882 20 C -0.166 4.166 21 C -0.034 4.034 22 O -0.301 6.301 23 C -0.072 4.072 24 H 0.060 0.940 25 H 0.100 0.900 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.106 0.894 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.201 0.799 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.127 0.873 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.254 1.384 14.427 18.350 hybrid contribution 1.485 0.406 1.493 2.145 sum -9.769 1.791 15.920 18.764 Atomic orbital electron populations 1.22692 0.81690 1.02444 0.99621 1.87915 1.19167 1.27810 1.95350 1.22559 0.93352 0.84938 1.00154 1.22269 0.93978 0.99872 0.91210 1.61769 1.15516 1.12371 1.33038 1.22279 0.89594 1.01776 0.96963 1.19549 0.83254 0.84216 0.89151 1.90487 1.45075 1.51731 1.55472 1.42237 1.05944 1.65395 1.09844 1.19387 0.94712 1.45607 0.83203 0.86259 1.25010 0.97300 0.97755 0.96034 1.69619 1.20057 1.48900 1.13699 0.86712 0.82840 0.78941 0.81125 1.19659 1.20266 1.19577 1.23178 0.95804 0.85735 0.99891 0.88234 1.22845 0.96793 1.00212 0.96749 1.23585 0.94519 0.96065 0.89276 1.89032 1.77080 1.29820 1.34157 1.24442 0.98943 0.88650 0.95161 0.94031 0.89981 0.94639 0.93365 0.92131 0.94038 0.89445 0.92139 0.89458 0.79913 0.91697 0.92819 0.87347 0.90767 0.89960 0.90261 0.90490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.41 16 2 O -0.38 -4.67 7.75 -35.23 -0.27 -4.94 16 3 C 0.07 0.73 6.27 37.16 0.23 0.96 16 4 C 0.06 0.64 5.44 -3.82 -0.02 0.62 16 5 N -0.50 -7.83 3.86 -226.21 -0.87 -8.71 16 6 C 0.03 0.41 5.03 -4.98 -0.03 0.38 16 7 C 0.45 9.87 5.96 -10.98 -0.07 9.80 16 8 O -0.55 -13.55 10.91 5.55 0.06 -13.49 16 9 N -0.59 -13.86 5.09 -10.96 -0.06 -13.91 16 10 C -0.30 -8.34 10.16 -14.93 -0.15 -8.50 16 11 H 0.12 3.77 7.39 -52.48 -0.39 3.39 16 12 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 13 N -0.88 -25.77 13.96 55.50 0.77 -25.00 16 14 Si 0.88 19.45 27.74 -169.99 -4.71 14.74 16 15 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 18 C 0.06 1.01 2.49 -66.15 -0.16 0.85 16 19 H 0.10 1.55 5.40 -51.93 -0.28 1.27 16 20 C -0.13 -2.28 5.99 -25.17 -0.15 -2.43 16 21 C 0.04 0.82 7.30 37.93 0.28 1.09 16 22 O -0.38 -7.62 11.65 -35.23 -0.41 -8.03 16 23 C 0.01 0.10 6.02 37.93 0.23 0.33 16 24 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.04 0.46 8.00 -51.93 -0.42 0.04 16 30 H 0.09 0.87 7.65 -51.93 -0.40 0.47 16 31 H 0.06 0.90 5.52 -51.93 -0.29 0.61 16 32 H 0.09 1.23 7.64 -51.92 -0.40 0.83 16 33 H 0.37 7.66 5.76 -40.82 -0.24 7.43 16 34 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.11 2.21 6.20 -51.93 -0.32 1.89 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.08 1.90 6.37 -51.93 -0.33 1.57 16 39 H 0.08 1.48 3.67 -51.93 -0.19 1.29 16 40 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 309.91 15.07 4.67 4.67 Total: -1.00 -31.87 309.91 -5.44 -37.31 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -5.79 Total: 11.80 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 1.18 Total: 5.56 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: -0.16 Total: -47.62 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.62 Total: -26.46 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.71 Total: 14.74 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.87 -5.44 -37.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490053410.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.065 kcal (2) G-P(sol) polarization free energy of solvation -31.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds