Wall clock time and date at job start Mon Mar 30 2020 05:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42902 * 114.00135 * 2 1 4 4 C 1.52998 * 109.47516 * 180.02562 * 3 2 1 5 5 N 1.46909 * 109.46881 * 64.05949 * 4 3 2 6 6 C 1.46898 * 110.99736 * 162.56835 * 5 4 3 7 7 C 1.50697 * 109.47139 * 199.26366 * 6 5 4 8 8 O 1.21290 * 120.00319 * 7.02136 * 7 6 5 9 9 N 1.34782 * 120.00133 * 187.02490 * 7 6 5 10 10 C 1.37096 * 119.99919 * 179.97438 * 9 7 6 11 11 H 1.08004 * 120.00038 * 0.02562 * 10 9 7 12 12 C 1.38952 * 120.00032 * 179.97438 * 10 9 7 13 13 N 1.31412 * 120.00013 * 180.27648 * 12 10 9 14 14 Si 1.86797 * 119.99763 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.47262 * 89.99514 * 14 12 10 16 16 H 1.48498 * 109.47458 * 209.99401 * 14 12 10 17 17 H 1.48496 * 109.47235 * 329.99897 * 14 12 10 18 18 C 1.46897 * 111.00282 * 286.52161 * 5 4 3 19 19 H 1.09001 * 110.45701 * 10.60448 * 18 5 4 20 20 C 1.54505 * 110.50980 * 133.20899 * 18 5 4 21 21 C 1.54479 * 104.06204 * 118.64928 * 20 18 5 22 22 O 1.44421 * 104.80457 * 23.97164 * 21 20 18 23 23 C 1.44644 * 105.37251 * 319.57469 * 22 21 20 24 24 H 1.09003 * 109.47457 * 60.00148 * 1 2 3 25 25 H 1.09000 * 109.47015 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46819 * 299.99462 * 1 2 3 27 27 H 1.09000 * 109.46719 * 60.00142 * 3 2 1 28 28 H 1.09002 * 109.47052 * 300.00387 * 3 2 1 29 29 H 1.08997 * 109.46919 * 304.06438 * 4 3 2 30 30 H 1.08997 * 109.47383 * 184.05883 * 4 3 2 31 31 H 1.09004 * 109.47070 * 79.26024 * 6 5 4 32 32 H 1.09010 * 109.47103 * 319.26177 * 6 5 4 33 33 H 0.97002 * 119.99894 * 359.97438 * 9 7 6 34 34 H 0.97002 * 119.99688 * 179.72563 * 13 12 10 35 35 H 1.09006 * 110.51151 * 237.29123 * 20 18 5 36 36 H 1.08994 * 110.51244 * 359.86152 * 20 18 5 37 37 H 1.09000 * 110.37291 * 142.81126 * 21 20 18 38 38 H 1.09003 * 110.36901 * 265.03323 * 21 20 18 39 39 H 1.09003 * 110.33639 * 281.58729 * 23 22 21 40 40 H 1.08997 * 110.50912 * 159.18739 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9752 0.5423 -1.2465 6 6 5.4069 0.7732 -1.4809 7 6 5.7228 0.5340 -2.9348 8 8 4.8256 0.3289 -3.7247 9 7 7.0026 0.5479 -3.3575 10 6 7.2900 0.3297 -4.6801 11 1 6.4910 0.1472 -5.3834 12 6 8.6093 0.3446 -5.1160 13 7 8.8845 0.1409 -6.3847 14 14 9.9913 0.6610 -3.8996 15 1 10.4546 -0.6298 -3.3299 16 1 11.1204 1.3284 -4.5958 17 1 9.4975 1.5358 -2.8060 18 6 3.6687 -0.8943 -1.2348 19 1 3.0192 -1.1384 -0.3941 20 6 3.0119 -1.3185 -2.5674 21 6 3.9938 -2.3554 -3.1564 22 8 4.7133 -2.8719 -2.0157 23 6 4.9696 -1.7248 -1.1726 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.6886 1.8463 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.8525 0.5821 0.8504 30 1 3.9786 2.1779 0.0721 31 1 5.9908 0.0894 -0.8648 32 1 5.6567 1.8015 -1.2191 33 1 7.7202 0.7122 -2.7258 34 1 9.8052 0.1552 -6.6896 35 1 2.0387 -1.7746 -2.3853 36 1 2.9124 -0.4619 -3.2339 37 1 3.4468 -3.1560 -3.6543 38 1 4.6798 -1.8748 -3.8539 39 1 5.8075 -1.1473 -1.5631 40 1 5.1698 -2.0406 -0.1487 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490053410.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:41 Heat of formation + Delta-G solvation = -108.587847 kcal Electronic energy + Delta-G solvation = -22786.218263 eV Core-core repulsion = 19408.923899 eV Total energy + Delta-G solvation = -3377.294365 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.50266 -39.46610 -38.84099 -37.05291 -35.80935 -33.69678 -32.18886 -31.47210 -29.31461 -28.13378 -26.83043 -25.88371 -23.68287 -22.85305 -21.55468 -20.82463 -19.93323 -18.01625 -17.92018 -17.40848 -17.05205 -16.99359 -16.67413 -16.25850 -15.64273 -15.41892 -15.21935 -15.13858 -14.78508 -14.55134 -14.11842 -13.80443 -13.68379 -13.24900 -12.95558 -12.59324 -12.56084 -12.43190 -12.37081 -12.34756 -11.99966 -11.95506 -11.75621 -11.41586 -11.26884 -10.69617 -10.45773 -10.17161 -10.14113 -9.10527 -8.36219 -5.94648 1.30083 1.36420 1.44023 2.04639 2.25519 2.54588 2.95161 3.06313 3.20458 3.37772 3.74452 3.90637 4.09752 4.12563 4.24475 4.33655 4.39558 4.43741 4.48630 4.51518 4.58262 4.62563 4.68843 4.74669 4.77861 4.89834 4.91967 5.02289 5.09442 5.22468 5.40268 5.58777 5.79649 5.95742 6.09683 6.27194 6.39146 6.66779 6.97267 7.48115 8.07614 8.81680 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.027279 B = 0.005464 C = 0.005104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.201239 B = 5123.487017 C = 5484.376446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.407 6.407 3 C 0.066 3.934 4 C 0.054 3.946 5 N -0.522 5.522 6 C 0.034 3.966 7 C 0.453 3.547 8 O -0.581 6.581 9 N -0.600 5.600 10 C -0.315 4.315 11 H 0.057 0.943 12 C -0.017 4.017 13 N -0.939 5.939 14 Si 0.959 3.041 15 H -0.263 1.263 16 H -0.277 1.277 17 H -0.230 1.230 18 C 0.074 3.926 19 H 0.115 0.885 20 C -0.121 4.121 21 C 0.044 3.956 22 O -0.398 6.398 23 C -0.002 4.002 24 H 0.037 0.963 25 H 0.088 0.912 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.111 0.889 31 H 0.086 0.914 32 H 0.122 0.878 33 H 0.385 0.615 34 H 0.276 0.724 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.035 0.965 39 H 0.065 0.935 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.464 2.694 19.842 22.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.326 6.326 3 C -0.011 4.011 4 C -0.073 4.073 5 N -0.247 5.247 6 C -0.096 4.096 7 C 0.240 3.760 8 O -0.463 6.463 9 N -0.243 5.243 10 C -0.444 4.444 11 H 0.075 0.925 12 C -0.215 4.215 13 N -0.581 5.581 14 Si 0.779 3.221 15 H -0.187 1.187 16 H -0.202 1.202 17 H -0.153 1.153 18 C -0.035 4.035 19 H 0.133 0.867 20 C -0.160 4.160 21 C -0.032 4.032 22 O -0.316 6.316 23 C -0.079 4.079 24 H 0.056 0.944 25 H 0.106 0.894 26 H 0.073 0.927 27 H 0.096 0.904 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.129 0.871 31 H 0.104 0.896 32 H 0.140 0.860 33 H 0.220 0.780 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.053 0.947 39 H 0.083 0.917 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.050 2.371 18.805 21.940 hybrid contribution 1.219 0.077 0.083 1.225 sum -9.831 2.448 18.888 21.434 Atomic orbital electron populations 1.22809 0.80403 1.03154 1.00351 1.87840 1.20646 1.28642 1.95521 1.22617 0.92925 0.84675 1.00843 1.22446 0.94490 1.00885 0.89527 1.61644 1.15037 1.11953 1.36038 1.22197 0.90685 1.04408 0.92342 1.20784 0.82167 0.81419 0.91622 1.90499 1.46156 1.52203 1.57474 1.42076 1.07265 1.66664 1.08278 1.18943 0.93752 1.47015 0.84687 0.92497 1.26023 1.00249 0.96856 0.98378 1.69808 1.21042 1.50591 1.16613 0.85448 0.77883 0.79746 0.78981 1.18750 1.20237 1.15278 1.23092 0.95147 0.86303 0.98915 0.86698 1.22741 0.97347 0.98585 0.97294 1.23436 0.94024 0.96848 0.88921 1.89008 1.77210 1.31163 1.34256 1.24666 0.98982 0.88108 0.96147 0.94433 0.89389 0.92747 0.90415 0.93656 0.92404 0.87135 0.89627 0.86036 0.77987 0.91454 0.91072 0.90390 0.89261 0.94654 0.91746 0.87238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.71 16 2 O -0.41 -8.74 7.75 -148.98 -1.15 -9.89 16 3 C 0.07 1.22 6.27 71.98 0.45 1.67 16 4 C 0.05 1.03 5.44 86.30 0.47 1.49 16 5 N -0.52 -14.90 3.86 -869.59 -3.36 -18.26 16 6 C 0.03 1.02 5.03 85.56 0.43 1.45 16 7 C 0.45 19.72 5.96 87.66 0.52 20.24 16 8 O -0.58 -30.12 10.91 -3.06 -0.03 -30.16 16 9 N -0.60 -27.99 5.09 -306.98 -1.56 -29.55 16 10 C -0.31 -18.33 10.16 84.04 0.85 -17.48 16 11 H 0.06 3.94 7.39 -2.91 -0.02 3.92 16 12 C -0.02 -0.97 5.50 84.93 0.47 -0.50 16 13 N -0.94 -57.40 13.96 21.66 0.30 -57.09 16 14 Si 0.96 39.53 27.74 68.60 1.90 41.43 16 15 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 16 H -0.28 -11.38 7.11 99.48 0.71 -10.68 16 17 H -0.23 -7.88 6.52 99.48 0.65 -7.24 16 18 C 0.07 2.25 2.49 45.93 0.11 2.37 16 19 H 0.12 3.20 5.40 -2.39 -0.01 3.19 16 20 C -0.12 -4.35 5.99 31.61 0.19 -4.16 16 21 C 0.04 1.78 7.30 72.48 0.53 2.31 16 22 O -0.40 -15.66 11.65 -148.98 -1.74 -17.40 16 23 C 0.00 -0.06 6.02 72.48 0.44 0.37 16 24 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 0.97 8.00 -2.39 -0.02 0.95 16 30 H 0.11 1.61 7.65 -2.39 -0.02 1.60 16 31 H 0.09 2.19 5.52 -2.39 -0.01 2.18 16 32 H 0.12 2.84 7.64 -2.38 -0.02 2.82 16 33 H 0.39 15.13 5.76 -92.71 -0.53 14.59 16 34 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 35 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 36 H 0.08 3.30 6.20 -2.39 -0.01 3.29 16 37 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 38 H 0.04 1.75 6.37 -2.39 -0.02 1.73 16 39 H 0.06 2.29 3.67 -2.39 -0.01 2.28 16 40 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -75.69 309.91 0.53 -75.16 By element: Atomic # 1 Polarization: 35.81 SS G_CDS: 0.46 Total: 36.27 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 5.71 Total: 9.49 kcal Atomic # 7 Polarization: -100.28 SS G_CDS: -4.62 Total: -104.90 kcal Atomic # 8 Polarization: -54.52 SS G_CDS: -2.92 Total: -57.44 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 1.90 Total: 41.43 kcal Total: -75.69 0.53 -75.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490053410.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.431 kcal (2) G-P(sol) polarization free energy of solvation -75.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds