Wall clock time and date at job start Mon Mar 30 2020 05:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00109 * 2 1 4 4 C 1.52992 * 109.47166 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47009 * 55.00376 * 4 3 2 6 6 O 1.42901 * 109.47281 * 295.00007 * 4 3 2 7 7 C 1.53007 * 109.47133 * 175.00084 * 4 3 2 8 8 N 1.46895 * 109.47472 * 187.03259 * 7 4 3 9 9 C 1.46900 * 110.99923 * 290.85659 * 8 7 4 10 10 C 1.53242 * 109.34050 * 187.25418 * 9 8 7 11 11 N 1.47080 * 108.51739 * 306.16591 * 10 9 8 12 12 C 1.34778 * 120.87937 * 231.18719 * 11 10 9 13 13 O 1.21689 * 120.00198 * 5.23941 * 12 11 10 14 14 C 1.46375 * 119.99809 * 185.24174 * 12 11 10 15 15 H 1.08001 * 120.00093 * 354.98234 * 14 12 11 16 16 C 1.40049 * 119.99808 * 174.99109 * 14 12 11 17 17 N 1.30673 * 120.00128 * 359.97438 * 16 14 12 18 18 Si 1.86808 * 119.99923 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46873 * 179.97438 * 18 16 14 20 20 H 1.48503 * 109.46792 * 299.99289 * 18 16 14 21 21 H 1.48493 * 109.47186 * 59.99403 * 18 16 14 22 22 C 1.47070 * 118.23831 * 51.46016 * 11 10 9 23 23 C 1.46903 * 110.99748 * 55.15129 * 8 7 4 24 24 H 1.08991 * 109.47227 * 59.99794 * 1 2 3 25 25 H 1.09001 * 109.47060 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46574 * 299.99325 * 1 2 3 27 27 H 1.09003 * 109.46578 * 60.00192 * 3 2 1 28 28 H 1.08998 * 109.46759 * 300.00530 * 3 2 1 29 29 H 0.96700 * 114.00014 * 300.00243 * 6 4 3 30 30 H 1.08998 * 109.46528 * 67.03216 * 7 4 3 31 31 H 1.08996 * 109.47141 * 307.03326 * 7 4 3 32 32 H 1.09005 * 109.49884 * 67.28823 * 9 8 7 33 33 H 1.09002 * 109.49358 * 307.21038 * 9 8 7 34 34 H 1.08997 * 109.62450 * 186.46004 * 10 9 8 35 35 H 1.08998 * 109.62961 * 65.87532 * 10 9 8 36 36 H 0.97003 * 120.00101 * 180.02562 * 17 16 14 37 37 H 1.08999 * 109.63203 * 68.24543 * 22 11 10 38 38 H 1.09000 * 109.62961 * 188.83226 * 22 11 10 39 39 H 1.08997 * 109.49551 * 292.70753 * 23 8 7 40 40 H 1.08995 * 109.49059 * 52.76556 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8507 0.5685 -0.8428 6 8 3.9658 0.5792 1.2201 7 6 4.1573 2.5770 -0.1264 8 7 5.6109 2.4506 -0.2962 9 6 6.2448 1.9658 0.9371 10 6 7.7682 2.0200 0.7799 11 7 8.1384 1.2859 -0.4396 12 6 9.0880 0.3300 -0.4102 13 8 9.5840 -0.0025 0.6501 14 6 9.5228 -0.3082 -1.6537 15 1 9.0271 -0.0723 -2.5837 16 6 10.5814 -1.2249 -1.6372 17 7 11.1814 -1.5101 -0.5120 18 14 11.1359 -2.0400 -3.2241 19 1 12.2654 -2.9610 -2.9390 20 1 10.0061 -2.8071 -3.8074 21 1 11.5772 -0.9994 -4.1871 22 6 7.4491 1.6269 -1.6933 23 6 5.9341 1.5841 -1.4376 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.6886 1.8463 0.8901 28 1 1.6885 1.8464 -0.8899 29 1 3.7192 1.0745 2.0131 30 1 3.9454 3.1521 0.7750 31 1 3.7335 3.0874 -0.9911 32 1 5.9349 0.9379 1.1257 33 1 5.9428 2.5963 1.7734 34 1 8.2422 1.5559 1.6448 35 1 8.0908 3.0577 0.6948 36 1 11.9149 -2.1448 -0.5007 37 1 7.7416 2.6276 -2.0115 38 1 7.7122 0.9028 -2.4644 39 1 5.6286 0.5615 -1.2160 40 1 5.4065 1.9375 -2.3234 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563544713.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:39 Heat of formation + Delta-G solvation = -112.407245 kcal Electronic energy + Delta-G solvation = -21973.453366 eV Core-core repulsion = 18595.993380 eV Total energy + Delta-G solvation = -3377.459986 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.59979 -38.18605 -37.05209 -35.65697 -33.28864 -32.41780 -30.90742 -30.21057 -27.76790 -26.55780 -25.68996 -23.67941 -23.07516 -22.01521 -20.45874 -18.68874 -17.21975 -16.71958 -16.39408 -16.25136 -15.68977 -15.23463 -15.14222 -14.64474 -14.30804 -14.26654 -14.05462 -13.86190 -13.46914 -12.68570 -12.46841 -12.28773 -11.97290 -11.84385 -11.54532 -11.31481 -11.14586 -11.08191 -10.91146 -10.84507 -10.79057 -10.40432 -10.17632 -10.09075 -9.96278 -9.91556 -8.80677 -7.97480 -7.52225 -7.08705 -6.14649 -4.59507 3.18708 3.23372 3.25093 3.41538 4.06983 4.16104 4.29495 4.60661 4.67264 4.68727 4.83331 4.99090 5.02531 5.04406 5.11822 5.16142 5.39337 5.43832 5.60784 5.61888 5.75216 5.79951 5.88519 5.99790 6.11654 6.22190 6.35553 6.54685 6.62409 6.83595 6.86731 7.24717 7.32837 7.49654 7.59068 7.68928 8.18957 8.42854 9.06744 9.51320 10.63316 10.82108 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.023774 B = 0.004385 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.489712 B = 6383.153567 C = 6832.429179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.381 6.381 3 C 0.032 3.968 4 C 0.068 3.932 5 H 0.110 0.890 6 O -0.541 6.541 7 C 0.028 3.972 8 N -0.526 5.526 9 C 0.032 3.968 10 C 0.124 3.876 11 N -0.643 5.643 12 C 0.561 3.439 13 O -0.579 6.579 14 C -0.545 4.545 15 H 0.072 0.928 16 C 0.088 3.912 17 N -0.769 5.769 18 Si 0.906 3.094 19 H -0.281 1.281 20 H -0.268 1.268 21 H -0.268 1.268 22 C 0.130 3.870 23 C 0.034 3.966 24 H 0.039 0.961 25 H 0.086 0.914 26 H 0.039 0.961 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.368 0.632 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.044 0.956 36 H 0.268 0.732 37 H 0.048 0.952 38 H 0.094 0.906 39 H 0.044 0.956 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.822 7.862 -1.137 20.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.299 6.299 3 C -0.046 4.046 4 C 0.007 3.993 5 H 0.128 0.872 6 O -0.346 6.346 7 C -0.101 4.101 8 N -0.249 5.249 9 C -0.096 4.096 10 C 0.000 4.000 11 N -0.382 5.382 12 C 0.366 3.634 13 O -0.461 6.461 14 C -0.582 4.582 15 H 0.090 0.910 16 C -0.132 4.132 17 N -0.397 5.397 18 Si 0.731 3.269 19 H -0.206 1.206 20 H -0.193 1.193 21 H -0.193 1.193 22 C 0.005 3.995 23 C -0.095 4.095 24 H 0.058 0.942 25 H 0.104 0.896 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.215 0.785 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.112 0.888 39 H 0.062 0.938 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.806 7.412 -0.950 19.310 hybrid contribution -0.783 -0.372 -0.376 0.945 sum -18.589 7.040 -1.326 19.921 Atomic orbital electron populations 1.22758 0.81379 1.02824 0.99700 1.88009 1.19322 1.27286 1.95295 1.23319 0.95320 0.85352 1.00567 1.22884 0.90389 0.96651 0.89352 0.87193 1.86750 1.79979 1.52895 1.14958 1.22833 0.89606 0.94785 1.02898 1.62283 1.06623 1.50507 1.05516 1.22780 0.95835 1.00520 0.90493 1.21222 0.92204 0.95561 0.91023 1.48200 1.42430 1.40906 1.06625 1.18228 0.77169 0.77530 0.90433 1.90584 1.57874 1.64944 1.32739 1.20937 1.17986 1.25884 0.93378 0.91047 1.25723 0.95357 0.95322 0.96766 1.70009 1.17211 1.26359 1.26170 0.86462 0.78619 0.79382 0.82462 1.20576 1.19267 1.19261 1.21547 0.88687 1.00298 0.89000 1.22735 0.98530 0.95295 0.92901 0.94206 0.89590 0.94248 0.93154 0.92538 0.78493 0.90515 0.89943 0.91293 0.91668 0.89727 0.93798 0.92082 0.93336 0.88840 0.93820 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.61 10.67 -40.08 -0.43 -5.04 16 3 C 0.03 0.31 5.57 37.15 0.21 0.52 16 4 C 0.07 0.80 2.91 -26.73 -0.08 0.73 16 5 H 0.11 1.55 6.11 -51.93 -0.32 1.23 16 6 O -0.54 -7.41 10.27 -40.08 -0.41 -7.82 16 7 C 0.03 0.30 5.19 -3.82 -0.02 0.28 16 8 N -0.53 -7.75 4.83 -234.02 -1.13 -8.88 16 9 C 0.03 0.53 4.84 -3.70 -0.02 0.51 16 10 C 0.12 2.57 6.61 -3.60 -0.02 2.55 16 11 N -0.64 -15.25 3.00 -173.84 -0.52 -15.77 16 12 C 0.56 16.45 7.63 -12.99 -0.10 16.35 16 13 O -0.58 -19.24 14.49 5.20 0.08 -19.17 16 14 C -0.55 -15.59 8.86 -35.63 -0.32 -15.91 16 15 H 0.07 1.85 5.74 -52.49 -0.30 1.55 16 16 C 0.09 2.49 5.50 -17.37 -0.10 2.40 16 17 N -0.77 -23.46 11.84 55.55 0.66 -22.80 16 18 Si 0.91 20.37 29.56 -169.99 -5.02 15.35 16 19 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 21 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 22 C 0.13 2.51 6.50 -3.37 -0.02 2.49 16 23 C 0.03 0.54 4.86 -3.46 -0.02 0.53 16 24 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.37 3.57 9.05 45.56 0.41 3.99 16 30 H 0.08 0.71 7.99 -51.93 -0.41 0.29 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 1.30 5.79 -51.93 -0.30 1.00 16 33 H 0.06 0.91 8.00 -51.93 -0.42 0.49 16 34 H 0.08 1.94 7.04 -51.93 -0.37 1.57 16 35 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.27 7.45 8.29 -40.82 -0.34 7.11 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.09 1.87 5.46 -51.93 -0.28 1.58 16 39 H 0.04 0.78 6.52 -51.93 -0.34 0.44 16 40 H 0.07 0.94 8.11 -51.93 -0.42 0.52 16 LS Contribution 318.67 15.07 4.80 4.80 Total: -1.00 -36.65 318.67 -6.61 -43.26 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -5.26 Total: 4.27 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: 0.63 Total: 11.79 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: -0.99 Total: -47.46 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -0.76 Total: -32.02 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -36.65 -6.61 -43.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563544713.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.144 kcal (2) G-P(sol) polarization free energy of solvation -36.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds