Wall clock time and date at job start Mon Mar 30 2020 05:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48505 * 109.47087 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47042 * 120.00217 * 3 2 1 6 6 H 1.48503 * 109.47023 * 240.00446 * 3 2 1 7 7 C 1.40044 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00127 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00321 * 359.97438 * 7 2 1 10 10 O 1.21687 * 119.99681 * 354.99925 * 9 7 2 11 11 N 1.34777 * 120.00313 * 175.00114 * 9 7 2 12 12 C 1.47077 * 120.87886 * 4.94953 * 11 9 7 13 13 C 1.53698 * 108.27700 * 128.75585 * 12 11 9 14 14 N 1.46898 * 109.25562 * 54.08236 * 13 12 11 15 15 C 1.46897 * 111.00153 * 172.60616 * 14 13 12 16 16 C 1.52994 * 109.47226 * 294.30122 * 15 14 13 17 17 C 1.53006 * 109.47270 * 179.97438 * 16 15 14 18 18 C 1.53001 * 109.47153 * 180.02562 * 17 16 15 19 19 C 1.52998 * 109.47012 * 179.97438 * 18 17 16 20 20 F 1.39901 * 109.47361 * 179.97438 * 19 18 17 21 21 C 1.46905 * 111.27013 * 296.75466 * 14 13 12 22 22 C 1.47076 * 120.88062 * 185.22734 * 11 9 7 23 23 H 0.97000 * 120.00181 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.62715 * 248.52147 * 12 11 9 25 25 H 1.09000 * 109.63081 * 9.10385 * 12 11 9 26 26 H 1.09001 * 109.64838 * 294.07883 * 13 12 11 27 27 H 1.09004 * 109.42089 * 173.94552 * 13 12 11 28 28 H 1.09003 * 109.47098 * 54.30008 * 15 14 13 29 29 H 1.09003 * 109.47503 * 174.29843 * 15 14 13 30 30 H 1.08995 * 109.47765 * 299.99680 * 16 15 14 31 31 H 1.08999 * 109.47389 * 60.00185 * 16 15 14 32 32 H 1.09005 * 109.46721 * 300.00044 * 17 16 15 33 33 H 1.09003 * 109.47335 * 59.99796 * 17 16 15 34 34 H 1.08993 * 109.46906 * 299.99824 * 18 17 16 35 35 H 1.09004 * 109.47204 * 60.00104 * 18 17 16 36 36 H 1.09002 * 109.47483 * 300.00356 * 19 18 17 37 37 H 1.09004 * 109.46903 * 60.00101 * 19 18 17 38 38 H 1.08994 * 109.49159 * 303.15220 * 21 14 13 39 39 H 1.08999 * 109.51460 * 183.07675 * 21 14 13 40 40 H 1.08999 * 109.63197 * 350.89564 * 22 11 9 41 41 H 1.09008 * 109.62635 * 111.48013 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 1.2757 2.7464 -0.0006 5 1 3.0945 1.6963 1.2125 6 1 3.0944 1.6963 -1.2126 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0617 -2.4825 0.0918 11 7 1.9449 -3.6455 -0.1028 12 6 3.4155 -3.6728 -0.1066 13 6 3.8814 -4.6906 0.9466 14 7 3.2360 -5.9847 0.6885 15 6 3.7848 -7.0303 1.5623 16 6 5.2539 -7.2709 1.2092 17 6 5.8256 -8.3594 2.1198 18 6 7.2950 -8.5996 1.7671 19 6 7.8668 -9.6876 2.6781 20 9 9.2102 -9.9077 2.3553 21 6 1.7771 -5.8907 0.8322 22 6 1.2249 -4.9226 -0.2195 23 1 -0.4850 0.8400 0.0004 24 1 3.7736 -3.9711 -1.0920 25 1 3.8007 -2.6840 0.1423 26 1 3.6077 -4.3397 1.9417 27 1 4.9637 -4.8053 0.8859 28 1 3.7085 -6.7119 2.6020 29 1 3.2217 -7.9531 1.4227 30 1 5.3303 -7.5893 0.1697 31 1 5.8170 -6.3481 1.3490 32 1 5.7493 -8.0406 3.1594 33 1 5.2626 -9.2824 1.9806 34 1 7.3716 -8.9182 0.7276 35 1 7.8577 -7.6765 1.9068 36 1 7.7901 -9.3687 3.7176 37 1 7.3042 -10.6108 2.5389 38 1 1.5327 -5.5231 1.8288 39 1 1.3329 -6.8757 0.6888 40 1 0.1612 -4.7606 -0.0453 41 1 1.3766 -5.3387 -1.2156 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565167767.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:16 Heat of formation + Delta-G solvation = -97.199067 kcal Electronic energy + Delta-G solvation = -20899.586751 eV Core-core repulsion = 17535.159031 eV Total energy + Delta-G solvation = -3364.427721 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -47.88836 -38.94869 -36.99269 -35.58944 -33.40103 -32.48713 -30.94489 -30.17351 -27.26380 -26.01791 -24.28662 -23.13909 -21.92552 -21.17389 -20.52580 -18.79483 -16.81821 -16.67919 -16.10237 -15.77402 -15.44127 -15.33834 -14.88731 -14.54241 -14.31770 -14.18911 -13.91851 -13.80325 -13.01513 -12.62018 -12.49606 -12.29646 -11.86355 -11.64788 -11.53055 -11.34643 -11.17277 -11.06811 -11.00651 -10.90508 -10.86110 -10.77480 -10.63021 -10.28728 -10.18906 -9.94891 -8.86229 -8.16580 -7.59300 -7.17913 -6.20580 -4.65733 3.14462 3.19496 3.21072 3.91041 4.08534 4.33537 4.40252 4.54411 4.56644 4.62138 4.73783 4.82099 5.09733 5.16869 5.24865 5.36626 5.50059 5.52201 5.56913 5.62804 5.64381 5.72669 5.78839 5.86199 5.87542 5.88907 6.07335 6.08478 6.19530 6.30374 6.46721 6.54503 6.71978 7.27672 7.31017 7.44230 7.61907 8.12623 8.36128 9.00921 9.44161 10.56821 10.75400 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.029062 B = 0.003163 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.231330 B = 8849.780708 C = 9643.452743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.072 0.928 9 C 0.560 3.440 10 O -0.579 6.579 11 N -0.645 5.645 12 C 0.128 3.872 13 C 0.039 3.961 14 N -0.537 5.537 15 C 0.055 3.945 16 C -0.116 4.116 17 C -0.117 4.117 18 C -0.153 4.153 19 C 0.060 3.940 20 F -0.222 7.222 21 C 0.046 3.954 22 C 0.125 3.875 23 H 0.269 0.731 24 H 0.050 0.950 25 H 0.093 0.907 26 H 0.034 0.966 27 H 0.076 0.924 28 H 0.029 0.971 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.033 0.967 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.636 -15.327 4.304 20.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.206 1.206 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.090 0.910 9 C 0.366 3.634 10 O -0.462 6.462 11 N -0.384 5.384 12 C 0.004 3.996 13 C -0.090 4.090 14 N -0.262 5.262 15 C -0.073 4.073 16 C -0.153 4.153 17 C -0.155 4.155 18 C -0.190 4.190 19 C 0.005 3.995 20 F -0.203 7.203 21 C -0.083 4.083 22 C 0.001 3.999 23 H 0.080 0.920 24 H 0.068 0.932 25 H 0.111 0.889 26 H 0.052 0.948 27 H 0.094 0.906 28 H 0.047 0.953 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.051 0.949 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 11.879 -15.326 3.863 19.772 hybrid contribution 0.439 0.918 0.869 1.338 sum 12.318 -14.408 4.732 19.538 Atomic orbital electron populations 1.70005 1.07083 1.27412 1.35226 1.25731 0.94617 1.00302 0.92579 0.86448 0.79855 0.81082 0.79472 1.20553 1.19267 1.19202 1.20935 0.93528 0.89278 1.54409 0.91007 1.18248 0.86898 0.82214 0.76082 1.90584 1.14412 1.86123 1.55105 1.48241 1.04789 1.05835 1.79503 1.21574 0.82661 0.98618 0.96796 1.22707 0.98436 0.89293 0.98562 1.61963 1.04804 1.06015 1.53447 1.22089 0.95397 0.95409 0.94402 1.21588 0.95153 0.98477 1.00125 1.21464 0.94285 0.99594 1.00128 1.22173 0.97034 0.99276 1.00559 1.22053 0.77396 1.00042 1.00039 1.92764 1.36739 1.96249 1.94582 1.22505 0.87268 0.99628 0.98923 1.21204 0.97863 0.84431 0.96436 0.92030 0.93215 0.88852 0.94781 0.90618 0.95306 0.91167 0.90945 0.91640 0.91774 0.91610 0.90640 0.90706 0.90878 0.90874 0.94888 0.90968 0.89626 0.93305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.05 11.84 55.55 0.66 -22.40 16 2 C 0.09 2.43 5.50 -17.37 -0.10 2.34 16 3 Si 0.91 19.98 29.56 -169.99 -5.02 14.95 16 4 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.54 -15.27 8.86 -35.63 -0.32 -15.58 16 8 H 0.07 1.82 5.74 -52.49 -0.30 1.52 16 9 C 0.56 16.07 7.63 -12.99 -0.10 15.97 16 10 O -0.58 -18.89 14.49 5.20 0.08 -18.82 16 11 N -0.64 -14.97 3.00 -173.84 -0.52 -15.49 16 12 C 0.13 2.43 6.50 -3.36 -0.02 2.41 16 13 C 0.04 0.61 5.48 -3.46 -0.02 0.59 16 14 N -0.54 -7.95 4.63 -234.02 -1.08 -9.03 16 15 C 0.06 0.63 4.96 -3.83 -0.02 0.61 16 16 C -0.12 -1.08 5.15 -26.73 -0.14 -1.22 16 17 C -0.12 -0.83 5.21 -26.73 -0.14 -0.97 16 18 C -0.15 -1.07 5.67 -26.73 -0.15 -1.22 16 19 C 0.06 0.40 7.55 37.16 0.28 0.68 16 20 F -0.22 -2.18 17.36 2.25 0.04 -2.14 16 21 C 0.05 0.74 5.62 -3.70 -0.02 0.72 16 22 C 0.13 2.52 6.61 -3.60 -0.02 2.49 16 23 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 24 H 0.05 0.90 8.14 -51.92 -0.42 0.47 16 25 H 0.09 1.82 5.46 -51.93 -0.28 1.54 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 0.99 6.16 -51.93 -0.32 0.67 16 28 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 29 H 0.07 0.74 7.97 -51.93 -0.41 0.32 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.64 6.40 -51.93 -0.33 0.31 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 1.00 7.99 -51.93 -0.41 0.58 16 40 H 0.09 1.90 7.04 -51.93 -0.37 1.53 16 41 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 LS Contribution 329.67 15.07 4.97 4.97 Total: -1.00 -33.95 329.67 -8.29 -42.24 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -6.64 Total: -1.09 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: -0.76 Total: 6.81 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: -0.95 Total: -46.92 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: 0.08 Total: -18.82 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.95 -8.29 -42.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565167767.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.963 kcal (2) G-P(sol) polarization free energy of solvation -33.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds