Wall clock time and date at job start Mon Mar 30 2020 05:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48505 * 109.47087 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47042 * 120.00217 * 3 2 1 6 6 H 1.48503 * 109.47023 * 240.00446 * 3 2 1 7 7 C 1.40044 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00127 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00321 * 359.97438 * 7 2 1 10 10 O 1.21687 * 119.99681 * 354.99925 * 9 7 2 11 11 N 1.34777 * 120.00313 * 175.00114 * 9 7 2 12 12 C 1.47077 * 120.87886 * 4.94953 * 11 9 7 13 13 C 1.53698 * 108.27700 * 128.75585 * 12 11 9 14 14 N 1.46898 * 109.25562 * 54.08236 * 13 12 11 15 15 C 1.46897 * 111.00153 * 172.60616 * 14 13 12 16 16 C 1.52994 * 109.47226 * 294.30122 * 15 14 13 17 17 C 1.53006 * 109.47270 * 179.97438 * 16 15 14 18 18 C 1.53001 * 109.47153 * 180.02562 * 17 16 15 19 19 C 1.52998 * 109.47012 * 179.97438 * 18 17 16 20 20 F 1.39901 * 109.47361 * 179.97438 * 19 18 17 21 21 C 1.46905 * 111.27013 * 296.75466 * 14 13 12 22 22 C 1.47076 * 120.88062 * 185.22734 * 11 9 7 23 23 H 0.97000 * 120.00181 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.62715 * 248.52147 * 12 11 9 25 25 H 1.09000 * 109.63081 * 9.10385 * 12 11 9 26 26 H 1.09001 * 109.64838 * 294.07883 * 13 12 11 27 27 H 1.09004 * 109.42089 * 173.94552 * 13 12 11 28 28 H 1.09003 * 109.47098 * 54.30008 * 15 14 13 29 29 H 1.09003 * 109.47503 * 174.29843 * 15 14 13 30 30 H 1.08995 * 109.47765 * 299.99680 * 16 15 14 31 31 H 1.08999 * 109.47389 * 60.00185 * 16 15 14 32 32 H 1.09005 * 109.46721 * 300.00044 * 17 16 15 33 33 H 1.09003 * 109.47335 * 59.99796 * 17 16 15 34 34 H 1.08993 * 109.46906 * 299.99824 * 18 17 16 35 35 H 1.09004 * 109.47204 * 60.00104 * 18 17 16 36 36 H 1.09002 * 109.47483 * 300.00356 * 19 18 17 37 37 H 1.09004 * 109.46903 * 60.00101 * 19 18 17 38 38 H 1.08994 * 109.49159 * 303.15220 * 21 14 13 39 39 H 1.08999 * 109.51460 * 183.07675 * 21 14 13 40 40 H 1.08999 * 109.63197 * 350.89564 * 22 11 9 41 41 H 1.09008 * 109.62635 * 111.48013 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 1.2757 2.7464 -0.0006 5 1 3.0945 1.6963 1.2125 6 1 3.0944 1.6963 -1.2126 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0617 -2.4825 0.0918 11 7 1.9449 -3.6455 -0.1028 12 6 3.4155 -3.6728 -0.1066 13 6 3.8814 -4.6906 0.9466 14 7 3.2360 -5.9847 0.6885 15 6 3.7848 -7.0303 1.5623 16 6 5.2539 -7.2709 1.2092 17 6 5.8256 -8.3594 2.1198 18 6 7.2950 -8.5996 1.7671 19 6 7.8668 -9.6876 2.6781 20 9 9.2102 -9.9077 2.3553 21 6 1.7771 -5.8907 0.8322 22 6 1.2249 -4.9226 -0.2195 23 1 -0.4850 0.8400 0.0004 24 1 3.7736 -3.9711 -1.0920 25 1 3.8007 -2.6840 0.1423 26 1 3.6077 -4.3397 1.9417 27 1 4.9637 -4.8053 0.8859 28 1 3.7085 -6.7119 2.6020 29 1 3.2217 -7.9531 1.4227 30 1 5.3303 -7.5893 0.1697 31 1 5.8170 -6.3481 1.3490 32 1 5.7493 -8.0406 3.1594 33 1 5.2626 -9.2824 1.9806 34 1 7.3716 -8.9182 0.7276 35 1 7.8577 -7.6765 1.9068 36 1 7.7901 -9.3687 3.7176 37 1 7.3042 -10.6108 2.5389 38 1 1.5327 -5.5231 1.8288 39 1 1.3329 -6.8757 0.6888 40 1 0.1612 -4.7606 -0.0453 41 1 1.3766 -5.3387 -1.2156 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565167767.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:16 Heat of formation + Delta-G solvation = -120.381599 kcal Electronic energy + Delta-G solvation = -20900.592021 eV Core-core repulsion = 17535.159031 eV Total energy + Delta-G solvation = -3365.432991 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.52296 -40.47709 -38.61667 -36.64422 -34.93551 -34.57317 -32.28544 -31.27892 -28.92850 -27.58166 -25.35382 -24.59882 -22.90622 -22.22328 -21.67327 -20.54010 -18.50527 -17.82627 -17.35847 -16.78653 -16.44757 -16.29558 -16.08289 -15.95574 -15.81496 -15.59361 -15.36932 -15.13040 -14.41753 -14.04590 -13.65737 -13.35502 -13.27871 -13.01364 -12.88828 -12.69809 -12.66853 -12.40080 -12.23164 -12.18783 -12.00829 -11.93242 -11.76762 -11.52166 -11.43617 -11.24353 -10.92429 -9.80998 -9.45663 -9.00920 -8.29952 -6.85280 1.39580 1.43174 1.54761 2.23303 2.44733 2.71915 2.99560 3.58471 3.65033 3.90784 3.99162 4.03001 4.09708 4.12167 4.22785 4.31982 4.39529 4.41678 4.55696 4.59516 4.60544 4.65903 4.75020 4.84270 4.88568 4.94296 4.98994 5.00825 5.03547 5.18999 5.27429 5.37058 5.41504 5.49772 5.73160 6.03507 6.12837 6.15495 6.41073 6.86605 7.41519 8.45148 8.66223 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.029062 B = 0.003163 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.231330 B = 8849.780708 C = 9643.452743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.027 3.973 3 Si 0.997 3.003 4 H -0.276 1.276 5 H -0.253 1.253 6 H -0.252 1.252 7 C -0.570 4.570 8 H 0.094 0.906 9 C 0.540 3.460 10 O -0.635 6.635 11 N -0.650 5.650 12 C 0.123 3.877 13 C 0.049 3.951 14 N -0.539 5.539 15 C 0.055 3.945 16 C -0.110 4.110 17 C -0.109 4.109 18 C -0.149 4.149 19 C 0.054 3.946 20 F -0.242 7.242 21 C 0.058 3.942 22 C 0.121 3.879 23 H 0.274 0.726 24 H 0.063 0.937 25 H 0.085 0.915 26 H 0.018 0.982 27 H 0.109 0.891 28 H 0.028 0.972 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.014 0.986 39 H 0.104 0.896 40 H 0.054 0.946 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.179 -16.090 4.682 22.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.187 4.187 3 Si 0.816 3.184 4 H -0.201 1.201 5 H -0.177 1.177 6 H -0.176 1.176 7 C -0.606 4.606 8 H 0.112 0.888 9 C 0.346 3.654 10 O -0.522 6.522 11 N -0.387 5.387 12 C 0.000 4.000 13 C -0.079 4.079 14 N -0.264 5.264 15 C -0.072 4.072 16 C -0.148 4.148 17 C -0.147 4.147 18 C -0.187 4.187 19 C -0.001 4.001 20 F -0.223 7.223 21 C -0.071 4.071 22 C -0.002 4.002 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.103 0.897 26 H 0.036 0.964 27 H 0.127 0.873 28 H 0.046 0.954 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.033 0.967 39 H 0.122 0.878 40 H 0.072 0.928 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 14.482 -16.154 4.242 22.106 hybrid contribution -0.356 1.045 0.726 1.322 sum 14.126 -15.110 4.968 21.273 Atomic orbital electron populations 1.70191 1.09631 1.28996 1.36556 1.27029 0.95513 1.05046 0.91155 0.85083 0.78234 0.74647 0.80429 1.20052 1.17689 1.17591 1.21476 0.94819 0.89747 1.54537 0.88781 1.18694 0.86569 0.84224 0.75916 1.90529 1.16673 1.87429 1.57604 1.48153 1.06762 1.05519 1.78218 1.21774 0.79925 0.99580 0.98722 1.22586 1.00240 0.88895 0.96226 1.61974 1.03583 1.06219 1.54602 1.22207 0.96746 0.94584 0.93641 1.21533 0.93599 0.99124 1.00498 1.21386 0.94171 0.99285 0.99843 1.22112 0.96921 0.99163 1.00495 1.22252 0.76330 1.00796 1.00707 1.92725 1.38420 1.96378 1.94781 1.22331 0.88702 0.99793 0.96250 1.21322 0.96236 0.84147 0.98538 0.91609 0.91902 0.89695 0.96407 0.87296 0.95354 0.89662 0.91217 0.92037 0.91170 0.90434 0.90995 0.91311 0.89486 0.89209 0.96738 0.87795 0.92767 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.15 11.84 21.83 0.26 -50.89 16 2 C 0.03 1.54 5.50 85.30 0.47 2.01 16 3 Si 1.00 40.89 29.56 68.60 2.03 42.92 16 4 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 6 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 7 C -0.57 -32.47 8.86 24.83 0.22 -32.25 16 8 H 0.09 4.75 5.74 -2.91 -0.02 4.73 16 9 C 0.54 32.21 7.63 86.36 0.66 32.87 16 10 O -0.63 -43.71 14.49 -4.31 -0.06 -43.77 16 11 N -0.65 -30.76 3.00 -822.12 -2.47 -33.23 16 12 C 0.12 4.58 6.50 86.50 0.56 5.14 16 13 C 0.05 1.45 5.48 86.54 0.47 1.93 16 14 N -0.54 -14.73 4.63 -894.31 -4.14 -18.87 16 15 C 0.06 1.10 4.96 86.30 0.43 1.52 16 16 C -0.11 -1.71 5.15 30.59 0.16 -1.55 16 17 C -0.11 -1.19 5.21 30.60 0.16 -1.03 16 18 C -0.15 -1.71 5.67 30.59 0.17 -1.54 16 19 C 0.05 0.58 7.55 71.98 0.54 1.13 16 20 F -0.24 -4.37 17.36 44.97 0.78 -3.59 16 21 C 0.06 1.84 5.62 86.38 0.49 2.32 16 22 C 0.12 4.97 6.61 86.35 0.57 5.54 16 23 H 0.27 15.42 8.29 -92.71 -0.77 14.65 16 24 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 25 H 0.08 3.26 5.46 -2.39 -0.01 3.25 16 26 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.11 2.52 6.16 -2.38 -0.01 2.51 16 28 H 0.03 0.58 8.12 -2.39 -0.02 0.57 16 29 H 0.08 1.47 7.97 -2.39 -0.02 1.45 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.06 1.01 6.40 -2.39 -0.02 1.00 16 32 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.09 0.70 8.14 -2.39 -0.02 0.69 16 37 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 38 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.10 2.63 7.99 -2.39 -0.02 2.61 16 40 H 0.05 2.54 7.04 -2.39 -0.02 2.52 16 41 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 Total: -1.00 -77.47 329.67 2.30 -75.17 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 1.00 Total: 16.17 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: 4.90 Total: 16.09 kcal Atomic # 7 Polarization: -96.64 SS G_CDS: -6.35 Total: -102.99 kcal Atomic # 8 Polarization: -43.71 SS G_CDS: -0.06 Total: -43.77 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.78 Total: -3.59 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Total: -77.47 2.30 -75.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565167767.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.214 kcal (2) G-P(sol) polarization free energy of solvation -77.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds