Wall clock time and date at job start Mon Mar 30 2020 05:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46900 * 111.00134 * 2 1 4 4 C 1.50696 * 109.47359 * 293.95963 * 3 2 1 5 5 H 1.08008 * 119.99724 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00319 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99761 * 359.72066 * 6 4 3 8 8 Si 1.86805 * 119.99951 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46984 * 179.72199 * 8 6 4 10 10 H 1.48497 * 109.47125 * 299.72543 * 8 6 4 11 11 H 1.48499 * 109.47139 * 59.72249 * 8 6 4 12 12 C 1.46900 * 111.00433 * 123.95566 * 2 1 3 13 13 C 1.52997 * 109.47380 * 160.25631 * 12 2 1 14 14 H 1.08995 * 109.47665 * 57.28475 * 13 12 2 15 15 O 1.42904 * 109.46944 * 297.28166 * 13 12 2 16 16 C 1.52997 * 109.47091 * 177.28762 * 13 12 2 17 17 N 1.46904 * 109.47164 * 184.99769 * 16 13 12 18 18 C 1.46902 * 110.99906 * 179.97438 * 17 16 13 19 19 H 1.08994 * 109.52302 * 324.87316 * 18 17 16 20 20 C 1.53181 * 109.51884 * 204.68707 * 18 17 16 21 21 C 1.53183 * 109.03443 * 183.11481 * 20 18 17 22 22 C 1.53097 * 109.15969 * 56.98187 * 21 20 18 23 23 O 1.42899 * 109.41292 * 302.38728 * 22 21 20 24 24 C 1.42898 * 114.09971 * 61.16322 * 23 22 21 25 25 H 1.08992 * 109.47422 * 65.26328 * 1 2 3 26 26 H 1.09003 * 109.46992 * 185.26636 * 1 2 3 27 27 H 1.09010 * 109.46870 * 305.25733 * 1 2 3 28 28 H 1.09004 * 109.47530 * 173.95157 * 3 2 1 29 29 H 1.09001 * 109.47047 * 53.95342 * 3 2 1 30 30 H 0.96996 * 120.00460 * 0.27744 * 7 6 4 31 31 H 1.09002 * 109.47043 * 280.25939 * 12 2 1 32 32 H 1.09004 * 109.46766 * 40.25490 * 12 2 1 33 33 H 0.96700 * 114.00267 * 300.00569 * 15 13 12 34 34 H 1.09003 * 109.47229 * 304.99610 * 16 13 12 35 35 H 1.09003 * 109.47361 * 64.99708 * 16 13 12 36 36 H 1.00903 * 110.99710 * 56.04729 * 17 16 13 37 37 H 1.08997 * 109.54178 * 302.97798 * 20 18 17 38 38 H 1.08996 * 109.54435 * 63.24953 * 20 18 17 39 39 H 1.08996 * 109.52319 * 297.07345 * 21 20 18 40 40 H 1.09000 * 109.52315 * 176.88113 * 21 20 18 41 41 H 1.09000 * 109.47769 * 182.41004 * 22 21 20 42 42 H 1.08990 * 109.49514 * 62.37933 * 22 21 20 43 43 H 1.09002 * 109.48434 * 178.85302 * 24 23 22 44 44 H 1.09002 * 109.48659 * 58.82579 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0472 -1.2983 5 1 1.0744 1.5113 -2.0487 6 6 2.0267 3.3496 -1.5284 7 7 2.7067 4.0039 -0.6125 8 14 1.5827 4.1869 -3.1381 9 1 2.1085 5.5758 -3.1351 10 1 2.1809 3.4336 -4.2694 11 1 0.1058 4.2171 -3.2895 12 6 1.9955 -0.7660 1.1375 13 6 3.4458 -1.1643 0.8567 14 1 4.0379 -0.2695 0.6655 15 8 3.4918 -2.0195 -0.2873 16 6 4.0156 -1.9035 2.0691 17 7 5.4412 -2.1805 1.8481 18 6 6.0234 -2.8905 2.9948 19 1 5.5614 -2.5354 3.9159 20 6 7.5324 -2.6317 3.0446 21 6 8.1399 -3.4385 4.1963 22 6 7.8107 -4.9207 4.0000 23 8 6.3932 -5.0874 3.9313 24 6 5.7760 -4.3939 2.8450 25 1 -0.3634 0.4300 -0.9333 26 1 -0.3633 -1.0234 0.0943 27 1 -0.3633 0.5933 0.8392 28 1 3.0797 1.3444 0.1083 29 1 1.5611 1.9273 0.8309 30 1 2.9376 3.5690 0.2233 31 1 1.9549 -0.1533 2.0381 32 1 1.3935 -1.6633 1.2811 33 1 2.9854 -2.8372 -0.1878 34 1 3.8993 -1.2851 2.9592 35 1 3.4800 -2.8428 2.2067 36 1 5.9489 -1.3304 1.6539 37 1 7.9866 -2.9411 2.1033 38 1 7.7150 -1.5696 3.2074 39 1 7.7216 -3.0947 5.1423 40 1 9.2215 -3.3037 4.2048 41 1 8.2040 -5.4946 4.8391 42 1 8.2636 -5.2743 3.0738 43 1 4.7035 -4.5883 2.8519 44 1 6.2022 -4.7403 1.9034 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573678276.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:01 Heat of formation + Delta-G solvation = -128.669652 kcal Electronic energy + Delta-G solvation = -21589.880306 eV Core-core repulsion = 18347.548224 eV Total energy + Delta-G solvation = -3242.332082 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.54466 -39.49574 -37.55191 -36.32335 -34.83394 -33.87704 -31.74977 -29.84982 -28.92031 -26.88929 -26.09238 -25.25425 -23.62542 -22.75487 -22.03043 -21.12763 -18.99413 -17.80197 -17.39711 -17.25257 -16.73827 -16.38437 -16.26321 -15.89775 -15.74516 -15.59564 -15.45247 -15.10483 -14.57983 -14.20576 -13.86388 -13.70049 -13.55924 -13.31037 -13.25646 -12.99177 -12.68607 -12.60285 -12.50184 -12.35934 -12.14873 -11.94115 -11.79639 -11.70188 -11.28902 -10.93041 -10.69556 -10.58451 -10.54443 -9.47656 -9.08109 -8.69359 -6.39190 1.52334 1.61279 1.80743 2.54821 2.66108 3.02545 3.13622 3.33043 3.61950 3.69243 3.79898 3.88531 3.93780 4.06599 4.14640 4.24453 4.27099 4.33136 4.45030 4.45673 4.49953 4.62462 4.64321 4.66466 4.75312 4.79987 4.83857 4.91362 4.93209 4.97716 5.07585 5.09310 5.11631 5.23172 5.76501 5.85819 5.97532 6.21337 6.28808 6.36601 6.40887 6.63296 7.05966 7.40580 8.69445 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.029554 B = 0.003298 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.205862 B = 8488.405293 C = 9023.795801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.538 5.538 3 C 0.196 3.804 4 C -0.599 4.599 5 H 0.052 0.948 6 C -0.039 4.039 7 N -0.938 5.938 8 Si 1.120 2.880 9 H -0.282 1.282 10 H -0.272 1.272 11 H -0.268 1.268 12 C 0.023 3.977 13 C 0.129 3.871 14 H 0.058 0.942 15 O -0.552 6.552 16 C 0.041 3.959 17 N -0.678 5.678 18 C 0.056 3.944 19 H 0.044 0.956 20 C -0.126 4.126 21 C -0.148 4.148 22 C 0.052 3.948 23 O -0.402 6.402 24 C 0.075 3.925 25 H 0.053 0.947 26 H 0.086 0.914 27 H 0.007 0.993 28 H -0.001 1.001 29 H -0.047 1.047 30 H 0.252 0.748 31 H 0.027 0.973 32 H 0.100 0.900 33 H 0.379 0.621 34 H 0.038 0.962 35 H 0.094 0.906 36 H 0.343 0.657 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.094 0.906 41 H 0.109 0.891 42 H 0.057 0.943 43 H 0.092 0.908 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.333 -17.781 10.074 21.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.261 5.261 3 C 0.070 3.930 4 C -0.637 4.637 5 H 0.071 0.929 6 C -0.235 4.235 7 N -0.575 5.575 8 Si 0.941 3.059 9 H -0.208 1.208 10 H -0.197 1.197 11 H -0.193 1.193 12 C -0.106 4.106 13 C 0.068 3.932 14 H 0.077 0.923 15 O -0.357 6.357 16 C -0.089 4.089 17 N -0.311 5.311 18 C -0.054 4.054 19 H 0.062 0.938 20 C -0.164 4.164 21 C -0.186 4.186 22 C -0.024 4.024 23 O -0.321 6.321 24 C -0.002 4.002 25 H 0.072 0.928 26 H 0.105 0.895 27 H 0.025 0.975 28 H 0.017 0.983 29 H -0.029 1.029 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.118 0.882 33 H 0.227 0.773 34 H 0.057 0.943 35 H 0.112 0.888 36 H 0.162 0.838 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.113 0.887 41 H 0.127 0.873 42 H 0.075 0.925 43 H 0.110 0.890 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.777 -16.833 8.364 20.342 hybrid contribution -0.521 -0.085 2.526 2.580 sum 7.256 -16.919 10.890 21.389 Atomic orbital electron populations 1.22221 0.87196 1.01082 1.00014 1.61845 1.08071 1.14381 1.41817 1.19545 0.93364 0.85194 0.94913 1.22306 1.38263 1.00086 1.03014 0.92929 1.27425 0.93635 0.95879 1.06607 1.70933 1.38631 1.40079 1.07899 0.82895 0.77084 0.75105 0.70802 1.20762 1.19683 1.19289 1.22867 0.97380 0.98723 0.91587 1.21615 0.93731 0.92128 0.85704 0.92349 1.86640 1.75002 1.34815 1.39289 1.22608 0.89780 1.00525 0.95949 1.60318 1.02436 1.28868 1.39447 1.22149 0.95602 0.95775 0.91848 0.93796 1.21798 0.93692 1.00953 0.99940 1.22165 1.02427 0.95647 0.98382 1.22796 0.80724 0.96088 1.02803 1.87910 1.21802 1.71380 1.50975 1.22494 0.98457 0.89912 0.89345 0.92805 0.89530 0.97470 0.98268 1.02917 0.93904 0.95500 0.88207 0.77295 0.94347 0.88796 0.83811 0.90854 0.91322 0.91412 0.88748 0.87271 0.92453 0.89010 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.66 9.31 127.69 1.19 2.84 16 2 N -0.54 -23.43 4.60 -927.05 -4.26 -27.69 16 3 C 0.20 10.64 3.86 85.56 0.33 10.97 16 4 C -0.60 -35.30 8.58 25.60 0.22 -35.08 16 5 H 0.05 3.09 7.10 -2.91 -0.02 3.07 16 6 C -0.04 -2.28 5.46 84.66 0.46 -1.82 16 7 N -0.94 -59.03 13.65 21.45 0.29 -58.74 16 8 Si 1.12 51.57 29.90 68.60 2.05 53.62 16 9 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 10 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 11 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 12 C 0.02 0.78 4.65 86.30 0.40 1.18 16 13 C 0.13 4.11 3.22 30.59 0.10 4.21 16 14 H 0.06 2.33 6.72 -2.39 -0.02 2.32 16 15 O -0.55 -18.37 13.20 -148.98 -1.97 -20.34 16 16 C 0.04 0.98 5.12 86.30 0.44 1.43 16 17 N -0.68 -15.78 6.26 -491.09 -3.07 -18.86 16 18 C 0.06 1.12 2.69 45.01 0.12 1.24 16 19 H 0.04 0.93 7.80 -2.39 -0.02 0.91 16 20 C -0.13 -2.13 5.30 30.72 0.16 -1.97 16 21 C -0.15 -2.02 6.14 30.69 0.19 -1.83 16 22 C 0.05 0.76 6.84 72.01 0.49 1.25 16 23 O -0.40 -8.21 10.76 -148.98 -1.60 -9.82 16 24 C 0.08 1.48 6.33 72.01 0.46 1.94 16 25 H 0.05 2.26 7.01 -2.39 -0.02 2.25 16 26 H 0.09 2.59 7.85 -2.39 -0.02 2.57 16 27 H 0.01 0.26 8.07 -2.38 -0.02 0.25 16 28 H 0.00 -0.04 6.47 -2.38 -0.02 -0.05 16 29 H -0.05 -2.69 7.93 -2.39 -0.02 -2.71 16 30 H 0.25 16.05 7.22 -92.71 -0.67 15.38 16 31 H 0.03 0.92 8.00 -2.39 -0.02 0.90 16 32 H 0.10 2.61 7.75 -2.39 -0.02 2.59 16 33 H 0.38 9.20 9.05 -74.06 -0.67 8.53 16 34 H 0.04 0.91 8.06 -2.39 -0.02 0.89 16 35 H 0.09 1.87 7.49 -2.39 -0.02 1.85 16 36 H 0.34 8.46 8.37 -89.69 -0.75 7.71 16 37 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.11 1.19 8.14 -2.39 -0.02 1.18 16 42 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.09 1.73 7.52 -2.39 -0.02 1.72 16 44 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -71.51 346.60 -4.34 -75.84 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: -0.34 Total: 21.62 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: 4.56 Total: -15.65 kcal Atomic # 7 Polarization: -98.24 SS G_CDS: -7.04 Total: -105.29 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -3.57 Total: -30.15 kcal Atomic # 14 Polarization: 51.57 SS G_CDS: 2.05 Total: 53.62 kcal Total: -71.51 -4.34 -75.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573678276.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.825 kcal (2) G-P(sol) polarization free energy of solvation -71.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds