Wall clock time and date at job start Mon Mar 30 2020 04:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00357 * 2 1 4 4 H 1.48502 * 109.47050 * 269.99647 * 3 2 1 5 5 H 1.48493 * 109.47032 * 29.99949 * 3 2 1 6 6 H 1.48506 * 109.47247 * 149.99770 * 3 2 1 7 7 C 1.37880 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00424 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99951 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47385 * 180.02562 * 9 7 2 11 11 N 1.46503 * 109.47235 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00075 * 179.97438 * 11 10 9 13 13 O 1.21590 * 119.99729 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99988 * 179.97438 * 12 11 10 15 15 C 1.46497 * 119.99866 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.46969 * 180.02562 * 15 14 12 17 17 C 1.53003 * 109.47123 * 180.02562 * 16 15 14 18 18 O 1.42901 * 110.56720 * 302.68189 * 17 16 15 19 19 C 1.54510 * 110.51322 * 180.02562 * 17 16 15 20 20 C 1.54487 * 104.06095 * 241.35571 * 19 17 16 21 21 O 1.44421 * 104.80329 * 336.02102 * 20 19 17 22 22 C 1.44419 * 105.27770 * 40.51345 * 21 20 19 23 23 H 0.97000 * 119.99622 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47248 * 59.99407 * 9 7 2 25 25 H 1.09005 * 109.46908 * 299.99954 * 9 7 2 26 26 H 1.08996 * 109.47423 * 59.99500 * 10 9 7 27 27 H 1.09005 * 109.47049 * 299.99854 * 10 9 7 28 28 H 0.96999 * 120.00233 * 359.97438 * 11 10 9 29 29 H 0.96994 * 119.99634 * 0.02562 * 14 12 11 30 30 H 1.09005 * 109.47172 * 60.00329 * 15 14 12 31 31 H 1.09005 * 109.47191 * 300.00735 * 15 14 12 32 32 H 1.08997 * 109.47581 * 60.00470 * 16 15 14 33 33 H 1.08997 * 109.47512 * 299.99852 * 16 15 14 34 34 H 0.96700 * 114.00285 * 178.02115 * 18 17 16 35 35 H 1.08991 * 110.51125 * 122.71135 * 19 17 16 36 36 H 1.08995 * 110.50842 * 359.97438 * 19 17 16 37 37 H 1.08996 * 110.36985 * 94.85432 * 20 19 17 38 38 H 1.09005 * 110.37004 * 217.07525 * 20 19 17 39 39 H 1.09002 * 110.37652 * 78.31690 * 22 21 20 40 40 H 1.08999 * 110.37409 * 200.54837 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 7 1.5125 -4.9308 0.0012 12 6 2.1863 -6.0981 0.0016 13 8 3.4022 -6.0981 0.0030 14 7 1.5123 -7.2652 0.0016 15 6 2.2447 -8.5340 0.0026 16 6 1.2504 -9.6968 0.0017 17 6 2.0154 -11.0219 0.0034 18 8 2.8937 -11.0960 -1.1214 19 6 1.0327 -12.2143 0.0018 20 6 1.3460 -12.9605 1.3177 21 8 2.7068 -12.5949 1.6343 22 6 2.8060 -11.1888 1.3200 23 1 -0.4849 0.8401 -0.0004 24 1 0.6245 -2.5571 -0.8896 25 1 0.6239 -2.5567 0.8903 26 1 2.8711 -3.6040 0.8922 27 1 2.8724 -3.6048 -0.8878 28 1 0.5425 -4.9308 0.0005 29 1 0.5424 -7.2651 0.0009 30 1 2.8707 -8.5914 0.8931 31 1 2.8722 -8.5920 -0.8869 32 1 0.6248 -9.6393 -0.8890 33 1 0.6228 -9.6389 0.8909 34 1 3.4255 -11.9030 -1.1528 35 1 1.2172 -12.8600 -0.8566 36 1 0.0021 -11.8598 0.0003 37 1 0.6714 -12.6337 2.1090 38 1 1.2648 -14.0377 1.1717 39 1 2.3554 -10.5902 2.1117 40 1 3.8486 -10.9045 1.1771 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593391386.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:11 Heat of formation + Delta-G solvation = -140.841110 kcal Electronic energy + Delta-G solvation = -20546.052579 eV Core-core repulsion = 17167.359608 eV Total energy + Delta-G solvation = -3378.692971 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.54445 -39.44872 -36.71731 -35.33547 -34.51620 -32.86765 -32.30579 -30.67600 -29.39879 -27.61367 -24.86195 -23.92917 -22.59158 -21.05754 -20.92004 -20.38825 -18.02961 -17.81589 -16.62163 -16.41090 -16.13821 -15.70147 -15.39771 -15.03915 -14.72189 -14.48939 -14.21883 -13.97983 -13.73210 -13.42774 -13.15218 -12.89526 -12.26335 -12.08752 -11.96938 -11.75118 -11.60663 -11.17414 -11.16225 -11.00442 -10.71800 -10.61311 -10.28907 -9.99169 -9.90627 -9.53224 -9.24021 -8.97449 -8.46348 -8.21051 -6.07634 -4.10005 3.03428 3.31137 3.37109 3.41756 3.44956 3.64217 3.72469 3.98193 4.22278 4.34159 4.43726 4.50928 4.65518 4.81101 4.87316 4.97018 5.14230 5.17981 5.24918 5.29570 5.33550 5.46378 5.51029 5.80920 5.95285 6.25189 6.33344 6.43112 6.63298 6.80917 7.03912 7.20599 7.27497 7.59329 7.65714 7.91922 8.28335 8.47357 8.95143 9.04197 9.54635 11.04114 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.056590 B = 0.002463 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.667838 B =11364.476821 C =11502.023286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.739 5.739 12 C 0.698 3.302 13 O -0.597 6.597 14 N -0.756 5.756 15 C 0.142 3.858 16 C -0.113 4.113 17 C 0.110 3.890 18 O -0.546 6.546 19 C -0.184 4.184 20 C 0.041 3.959 21 O -0.375 6.375 22 C 0.013 3.987 23 H 0.262 0.738 24 H 0.022 0.978 25 H 0.022 0.978 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.393 0.607 29 H 0.393 0.607 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.381 0.619 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.768 -26.494 1.120 26.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.017 3.983 11 N -0.393 5.393 12 C 0.397 3.603 13 O -0.476 6.476 14 N -0.413 5.413 15 C 0.018 3.982 16 C -0.151 4.151 17 C 0.068 3.932 18 O -0.352 6.352 19 C -0.222 4.222 20 C -0.036 4.036 21 O -0.293 6.293 22 C -0.064 4.064 23 H 0.071 0.929 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.226 0.774 29 H 0.226 0.774 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.230 0.770 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.112 0.888 39 H 0.092 0.908 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.855 -25.898 1.083 25.935 hybrid contribution -0.564 0.484 0.058 0.746 sum -1.419 -25.414 1.140 25.479 Atomic orbital electron populations 1.69956 1.06096 1.26826 1.50541 1.24999 0.94900 0.99415 0.95036 0.86505 0.79844 0.82972 0.78192 1.20565 1.21201 1.19711 1.21064 0.93293 0.90371 1.51145 0.92203 1.19324 0.94262 0.91099 0.97779 1.21585 0.95631 0.80427 1.00648 1.45532 1.09801 1.05342 1.78601 1.16063 0.85657 0.80484 0.78062 1.90892 1.11789 1.86667 1.58269 1.45121 1.09339 1.04853 1.81946 1.21032 0.93843 0.80475 1.02865 1.21782 0.97958 0.91620 1.03735 1.22427 0.89469 0.94779 0.86536 1.86585 1.56873 1.46234 1.45536 1.23704 1.01260 0.97769 0.99467 1.23455 0.84215 1.00569 0.95331 1.89174 1.28745 1.24307 1.87120 1.24335 1.02736 0.83204 0.96143 0.92885 0.95982 0.95990 0.92798 0.92800 0.77443 0.77405 0.92015 0.90712 0.89958 0.89698 0.77035 0.89490 0.89314 0.91888 0.88804 0.90832 0.87661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.30 13.29 55.43 0.74 -25.56 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 10 C 0.14 3.08 5.61 -4.04 -0.02 3.05 16 11 N -0.74 -13.37 5.56 -65.22 -0.36 -13.74 16 12 C 0.70 12.61 8.57 -86.92 -0.74 11.87 16 13 O -0.60 -13.36 16.34 5.29 0.09 -13.27 16 14 N -0.76 -9.71 5.56 -65.22 -0.36 -10.08 16 15 C 0.14 1.63 5.35 -4.05 -0.02 1.61 16 16 C -0.11 -0.86 4.33 -26.73 -0.12 -0.98 16 17 C 0.11 0.80 1.11 -89.05 -0.10 0.70 16 18 O -0.55 -4.60 12.32 -35.23 -0.43 -5.03 16 19 C -0.18 -1.01 6.52 -25.16 -0.16 -1.17 16 20 C 0.04 0.24 7.63 37.94 0.29 0.53 16 21 O -0.37 -3.27 11.65 -35.23 -0.41 -3.68 16 22 C 0.01 0.10 5.97 37.94 0.23 0.33 16 23 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 24 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 28 H 0.39 6.03 8.49 -40.82 -0.35 5.69 16 29 H 0.39 3.79 8.49 -40.82 -0.35 3.45 16 30 H 0.06 0.75 7.45 -51.93 -0.39 0.36 16 31 H 0.07 1.03 7.67 -51.93 -0.40 0.63 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.50 8.08 -51.93 -0.42 0.08 16 34 H 0.38 2.03 9.04 45.56 0.41 2.44 16 35 H 0.09 0.44 8.00 -51.93 -0.42 0.03 16 36 H 0.09 0.39 7.73 -51.93 -0.40 -0.01 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.54 7.82 -51.93 -0.41 0.14 16 40 H 0.11 0.85 8.09 -51.93 -0.42 0.43 16 LS Contribution 334.22 15.07 5.04 5.04 Total: -1.00 -34.72 334.22 -7.57 -42.28 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -5.63 Total: 4.74 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -1.20 Total: 2.77 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: 0.01 Total: -49.38 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.76 Total: -21.98 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.72 -7.57 -42.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593391386.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.557 kcal (2) G-P(sol) polarization free energy of solvation -34.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds