Wall clock time and date at job start Mon Mar 30 2020 04:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00357 * 2 1 4 4 H 1.48502 * 109.47050 * 269.99647 * 3 2 1 5 5 H 1.48493 * 109.47032 * 29.99949 * 3 2 1 6 6 H 1.48506 * 109.47247 * 149.99770 * 3 2 1 7 7 C 1.37880 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00424 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99951 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47385 * 180.02562 * 9 7 2 11 11 N 1.46503 * 109.47235 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00075 * 179.97438 * 11 10 9 13 13 O 1.21590 * 119.99729 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99988 * 179.97438 * 12 11 10 15 15 C 1.46497 * 119.99866 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.46969 * 180.02562 * 15 14 12 17 17 C 1.53003 * 109.47123 * 180.02562 * 16 15 14 18 18 O 1.42901 * 110.56720 * 302.68189 * 17 16 15 19 19 C 1.54510 * 110.51322 * 180.02562 * 17 16 15 20 20 C 1.54487 * 104.06095 * 241.35571 * 19 17 16 21 21 O 1.44421 * 104.80329 * 336.02102 * 20 19 17 22 22 C 1.44419 * 105.27770 * 40.51345 * 21 20 19 23 23 H 0.97000 * 119.99622 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47248 * 59.99407 * 9 7 2 25 25 H 1.09005 * 109.46908 * 299.99954 * 9 7 2 26 26 H 1.08996 * 109.47423 * 59.99500 * 10 9 7 27 27 H 1.09005 * 109.47049 * 299.99854 * 10 9 7 28 28 H 0.96999 * 120.00233 * 359.97438 * 11 10 9 29 29 H 0.96994 * 119.99634 * 0.02562 * 14 12 11 30 30 H 1.09005 * 109.47172 * 60.00329 * 15 14 12 31 31 H 1.09005 * 109.47191 * 300.00735 * 15 14 12 32 32 H 1.08997 * 109.47581 * 60.00470 * 16 15 14 33 33 H 1.08997 * 109.47512 * 299.99852 * 16 15 14 34 34 H 0.96700 * 114.00285 * 178.02115 * 18 17 16 35 35 H 1.08991 * 110.51125 * 122.71135 * 19 17 16 36 36 H 1.08995 * 110.50842 * 359.97438 * 19 17 16 37 37 H 1.08996 * 110.36985 * 94.85432 * 20 19 17 38 38 H 1.09005 * 110.37004 * 217.07525 * 20 19 17 39 39 H 1.09002 * 110.37652 * 78.31690 * 22 21 20 40 40 H 1.08999 * 110.37409 * 200.54837 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 7 1.5125 -4.9308 0.0012 12 6 2.1863 -6.0981 0.0016 13 8 3.4022 -6.0981 0.0030 14 7 1.5123 -7.2652 0.0016 15 6 2.2447 -8.5340 0.0026 16 6 1.2504 -9.6968 0.0017 17 6 2.0154 -11.0219 0.0034 18 8 2.8937 -11.0960 -1.1214 19 6 1.0327 -12.2143 0.0018 20 6 1.3460 -12.9605 1.3177 21 8 2.7068 -12.5949 1.6343 22 6 2.8060 -11.1888 1.3200 23 1 -0.4849 0.8401 -0.0004 24 1 0.6245 -2.5571 -0.8896 25 1 0.6239 -2.5567 0.8903 26 1 2.8711 -3.6040 0.8922 27 1 2.8724 -3.6048 -0.8878 28 1 0.5425 -4.9308 0.0005 29 1 0.5424 -7.2651 0.0009 30 1 2.8707 -8.5914 0.8931 31 1 2.8722 -8.5920 -0.8869 32 1 0.6248 -9.6393 -0.8890 33 1 0.6228 -9.6389 0.8909 34 1 3.4255 -11.9030 -1.1528 35 1 1.2172 -12.8600 -0.8566 36 1 0.0021 -11.8598 0.0003 37 1 0.6714 -12.6337 2.1090 38 1 1.2648 -14.0377 1.1717 39 1 2.3554 -10.5902 2.1117 40 1 3.8486 -10.9045 1.1771 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593391386.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:11 Heat of formation + Delta-G solvation = -170.095050 kcal Electronic energy + Delta-G solvation = -20547.321125 eV Core-core repulsion = 17167.359608 eV Total energy + Delta-G solvation = -3379.961517 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.23378 -40.76684 -37.42758 -36.71116 -35.94429 -34.81295 -33.17238 -31.68705 -30.80528 -28.45056 -26.63273 -24.81490 -23.35555 -22.76290 -22.05928 -21.37736 -19.40738 -18.42718 -18.40468 -17.32599 -17.07086 -16.89098 -16.54264 -16.44218 -15.59830 -15.57160 -15.47613 -15.15925 -14.96697 -14.57992 -14.25986 -14.20784 -13.61803 -13.20500 -12.95186 -12.73522 -12.66432 -12.51640 -12.39521 -12.21054 -12.11375 -11.82861 -11.67109 -11.48820 -11.26821 -11.16744 -10.59964 -10.54938 -10.34188 -9.70629 -8.23500 -6.33517 1.42544 1.43128 1.54507 1.76351 2.17081 2.42068 2.91656 3.11372 3.20530 3.36195 3.45948 3.68755 3.90511 4.01576 4.12546 4.26565 4.31670 4.49116 4.51396 4.53095 4.68973 4.75083 4.81817 4.87245 4.92848 4.99681 5.09795 5.11757 5.32219 5.49373 5.52990 5.60575 5.75115 5.79903 6.06610 6.18315 6.75118 6.79600 7.15265 7.35735 7.61001 8.88471 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.056590 B = 0.002463 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.667838 B =11364.476821 C =11502.023286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.160 3.840 11 N -0.733 5.733 12 C 0.695 3.305 13 O -0.643 6.643 14 N -0.732 5.732 15 C 0.143 3.857 16 C -0.104 4.104 17 C 0.109 3.891 18 O -0.566 6.566 19 C -0.175 4.175 20 C 0.036 3.964 21 O -0.397 6.397 22 C 0.012 3.988 23 H 0.266 0.734 24 H 0.009 0.991 25 H 0.010 0.990 26 H 0.043 0.957 27 H 0.041 0.959 28 H 0.408 0.592 29 H 0.413 0.587 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.392 0.608 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.073 0.927 38 H 0.106 0.894 39 H 0.077 0.923 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.699 -27.236 1.215 27.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.076 0.924 9 C -0.013 4.013 10 C 0.035 3.965 11 N -0.387 5.387 12 C 0.395 3.605 13 O -0.525 6.525 14 N -0.389 5.389 15 C 0.019 3.981 16 C -0.141 4.141 17 C 0.067 3.933 18 O -0.374 6.374 19 C -0.213 4.213 20 C -0.040 4.040 21 O -0.317 6.317 22 C -0.065 4.065 23 H 0.075 0.925 24 H 0.027 0.973 25 H 0.028 0.972 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.243 0.757 29 H 0.249 0.751 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.110 0.890 33 H 0.127 0.873 34 H 0.242 0.758 35 H 0.110 0.890 36 H 0.123 0.877 37 H 0.091 0.909 38 H 0.124 0.876 39 H 0.096 0.904 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.842 -26.696 1.176 26.786 hybrid contribution -0.288 0.632 0.029 0.695 sum -2.130 -26.064 1.205 26.179 Atomic orbital electron populations 1.70052 1.07502 1.27993 1.51051 1.25865 0.95818 1.03067 0.94427 0.85443 0.78620 0.78451 0.78520 1.19772 1.20446 1.19124 1.21472 0.93602 0.91952 1.51492 0.92364 1.19123 0.94204 0.91564 0.96413 1.21071 0.94662 0.81207 0.99522 1.45201 1.10397 1.04364 1.78780 1.16220 0.85156 0.81407 0.77764 1.90863 1.13971 1.87398 1.60251 1.44937 1.10346 1.03684 1.79978 1.21101 0.94731 0.80936 1.01344 1.21781 0.97155 0.89822 1.05377 1.22470 0.89684 0.95325 0.85833 1.86553 1.57459 1.47329 1.46049 1.23655 1.01466 0.96775 0.99408 1.23653 0.83058 1.01495 0.95808 1.89152 1.30550 1.24574 1.87384 1.24325 1.02362 0.83143 0.96708 0.92530 0.97252 0.97170 0.93885 0.94013 0.75668 0.75086 0.92781 0.93153 0.89040 0.87251 0.75777 0.89042 0.87670 0.90916 0.87562 0.90440 0.88783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.38 13.29 21.45 0.28 -54.10 16 2 C 0.01 0.39 5.46 84.66 0.46 0.85 16 3 Si 0.97 43.88 29.54 68.60 2.03 45.91 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.55 -30.86 9.11 25.60 0.23 -30.63 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 9 C 0.02 1.25 5.09 29.85 0.15 1.40 16 10 C 0.16 7.10 5.61 86.38 0.48 7.58 16 11 N -0.73 -26.17 5.56 -478.53 -2.66 -28.83 16 12 C 0.69 24.81 8.57 179.05 1.53 26.34 16 13 O -0.64 -29.06 16.34 -4.00 -0.07 -29.12 16 14 N -0.73 -17.77 5.56 -478.53 -2.66 -20.43 16 15 C 0.14 3.15 5.35 86.38 0.46 3.61 16 16 C -0.10 -1.33 4.33 30.59 0.13 -1.20 16 17 C 0.11 1.40 1.11 -9.77 -0.01 1.39 16 18 O -0.57 -9.07 12.32 -148.98 -1.83 -10.91 16 19 C -0.18 -1.46 6.52 31.61 0.21 -1.25 16 20 C 0.04 0.34 7.63 72.49 0.55 0.90 16 21 O -0.40 -6.51 11.65 -148.98 -1.74 -8.24 16 22 C 0.01 0.17 5.97 72.49 0.43 0.60 16 23 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 24 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 26 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 28 H 0.41 12.08 8.49 -92.71 -0.79 11.29 16 29 H 0.41 6.90 8.49 -92.71 -0.79 6.12 16 30 H 0.05 1.29 7.45 -2.38 -0.02 1.27 16 31 H 0.05 1.38 7.67 -2.38 -0.02 1.37 16 32 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.11 0.91 8.08 -2.39 -0.02 0.89 16 34 H 0.39 3.98 9.04 -74.06 -0.67 3.31 16 35 H 0.09 0.71 8.00 -2.39 -0.02 0.69 16 36 H 0.10 0.55 7.73 -2.39 -0.02 0.54 16 37 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 39 H 0.08 1.05 7.82 -2.39 -0.02 1.04 16 40 H 0.09 1.55 8.09 -2.39 -0.02 1.53 16 Total: -1.00 -74.66 334.22 -3.19 -77.84 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -1.18 Total: 18.29 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 4.64 Total: 9.59 kcal Atomic # 7 Polarization: -98.33 SS G_CDS: -5.04 Total: -103.36 kcal Atomic # 8 Polarization: -44.64 SS G_CDS: -3.64 Total: -48.27 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -74.66 -3.19 -77.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593391386.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.251 kcal (2) G-P(sol) polarization free energy of solvation -74.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds