Wall clock time and date at job start Mon Mar 30 2020 05:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46903 * 111.00137 * 2 1 4 4 C 1.53002 * 109.47078 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.99805 * 293.90229 * 4 3 2 6 6 C 1.54320 * 109.87962 * 172.80810 * 4 3 2 7 7 C 1.55164 * 102.94013 * 218.39021 * 6 4 3 8 8 H 1.09003 * 111.00156 * 277.42667 * 7 6 4 9 9 F 1.39897 * 111.00550 * 153.61763 * 7 6 4 10 10 C 1.54686 * 101.67477 * 35.33603 * 7 6 4 11 11 N 1.47025 * 109.88218 * 54.99777 * 4 3 2 12 12 C 1.34777 * 125.65000 * 298.32453 * 11 4 3 13 13 O 1.21283 * 119.99750 * 359.97438 * 12 11 4 14 14 C 1.50702 * 119.99928 * 180.27553 * 12 11 4 15 15 C 1.52996 * 109.47159 * 179.72352 * 14 12 11 16 16 C 1.52994 * 109.47118 * 179.97438 * 15 14 12 17 17 C 1.50708 * 109.47076 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99591 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99904 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99869 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00085 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47180 * 90.00070 * 21 19 17 23 23 H 1.48503 * 109.46903 * 210.00050 * 21 19 17 24 24 H 1.48498 * 109.47152 * 329.99815 * 21 19 17 25 25 H 1.08999 * 109.47253 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46768 * 300.00245 * 1 2 3 27 27 H 1.09000 * 109.46391 * 60.00082 * 1 2 3 28 28 H 1.00907 * 110.99680 * 123.95267 * 2 1 3 29 29 H 1.08998 * 109.47022 * 59.99664 * 3 2 1 30 30 H 1.09003 * 109.46970 * 299.99862 * 3 2 1 31 31 H 1.08996 * 110.72212 * 336.75060 * 6 4 3 32 32 H 1.09005 * 110.72088 * 100.03111 * 6 4 3 33 33 H 1.09005 * 110.39048 * 204.36578 * 10 7 6 34 34 H 1.09004 * 110.23918 * 82.11484 * 10 7 6 35 35 H 1.09004 * 109.46965 * 299.72211 * 14 12 11 36 36 H 1.08994 * 109.46990 * 59.72065 * 14 12 11 37 37 H 1.09004 * 109.47066 * 299.99797 * 15 14 12 38 38 H 1.09000 * 109.47234 * 59.99288 * 15 14 12 39 39 H 1.08998 * 109.46965 * 299.99512 * 16 15 14 40 40 H 1.09003 * 109.47184 * 60.00331 * 16 15 14 41 41 H 0.96996 * 120.00354 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5250 1.3306 0.0006 5 1 3.8861 0.9059 0.9373 6 6 4.0881 2.7558 -0.1810 7 6 5.3157 2.5296 -1.1027 8 1 6.1852 2.2156 -0.5251 9 9 5.6009 3.6780 -1.8490 10 6 4.8167 1.3825 -2.0127 11 7 4.0041 0.5242 -1.1316 12 6 3.7476 -0.7842 -1.3283 13 8 3.0680 -1.3955 -0.5312 14 6 4.3109 -1.4893 -2.5352 15 6 3.8791 -2.9569 -2.5163 16 6 4.4504 -3.6725 -3.7419 17 6 4.0255 -5.1183 -3.7228 18 1 3.4092 -5.4894 -2.9173 19 6 4.4227 -5.9670 -4.7343 20 7 4.0515 -7.2285 -4.7179 21 14 5.4880 -5.3248 -6.1279 22 1 6.9203 -5.4837 -5.7696 23 1 5.1993 -6.0926 -7.3658 24 1 5.1912 -3.8878 -6.3562 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.8306 -0.5261 0.7814 29 1 1.6460 1.8948 0.8899 30 1 1.6460 1.8948 -0.8900 31 1 3.3556 3.4010 -0.6660 32 1 4.3971 3.1735 0.7772 33 1 5.6608 0.8221 -2.4147 34 1 4.2055 1.7820 -2.8220 35 1 3.9378 -1.0124 -3.4416 36 1 5.3991 -1.4304 -2.5154 37 1 4.2522 -3.4337 -1.6099 38 1 2.7908 -3.0157 -2.5360 39 1 4.0768 -3.1956 -4.6480 40 1 5.5387 -3.6138 -3.7224 41 1 4.3311 -7.8256 -5.4293 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594444247.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:25 Heat of formation + Delta-G solvation = -74.647324 kcal Electronic energy + Delta-G solvation = -21546.158962 eV Core-core repulsion = 18182.709159 eV Total energy + Delta-G solvation = -3363.449804 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -47.99390 -40.13225 -37.36538 -35.58078 -34.16953 -32.14173 -31.44596 -30.08886 -28.21457 -26.24049 -24.23154 -23.49239 -22.06779 -21.45514 -19.98274 -18.86432 -17.48820 -17.14816 -16.59945 -15.75483 -15.64679 -15.30031 -15.19500 -14.67045 -14.36953 -14.23391 -13.93617 -13.59313 -13.19542 -12.92299 -12.76472 -12.58068 -12.43089 -12.13553 -11.90999 -11.74184 -11.49674 -11.40614 -11.17282 -10.93958 -10.87032 -10.72628 -9.89209 -9.70691 -9.62662 -9.22247 -9.04983 -8.72617 -8.47127 -8.01138 -5.97035 -3.94288 2.91132 3.10410 3.34476 3.41651 3.45075 3.82041 3.95532 4.09409 4.40568 4.50738 4.50941 4.69621 4.99307 5.08682 5.11341 5.20060 5.26308 5.30977 5.34611 5.36670 5.45026 5.50442 5.65563 5.68077 5.73750 5.83402 5.94825 6.14950 6.32016 6.65061 6.77833 6.99537 7.06649 7.44538 7.52512 7.57193 7.65454 7.87454 8.61288 8.64363 9.10092 9.65477 11.16780 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.019767 B = 0.004334 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.147907 B = 6459.135730 C = 7618.060942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.663 5.663 3 C 0.049 3.951 4 C 0.140 3.860 5 H 0.076 0.924 6 C -0.151 4.151 7 C 0.078 3.922 8 H 0.103 0.897 9 F -0.201 7.201 10 C 0.080 3.920 11 N -0.618 5.618 12 C 0.535 3.465 13 O -0.490 6.490 14 C -0.135 4.135 15 C -0.084 4.084 16 C -0.015 4.015 17 C -0.516 4.516 18 H 0.072 0.928 19 C 0.064 3.936 20 N -0.906 5.906 21 Si 0.880 3.120 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.266 1.266 25 H 0.067 0.933 26 H 0.010 0.990 27 H 0.056 0.944 28 H 0.355 0.645 29 H 0.030 0.970 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.014 0.986 40 H 0.009 0.991 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.479 23.798 9.631 25.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.299 5.299 3 C -0.082 4.082 4 C 0.036 3.964 5 H 0.094 0.906 6 C -0.189 4.189 7 C 0.041 3.959 8 H 0.121 0.879 9 F -0.181 7.181 10 C -0.045 4.045 11 N -0.357 5.357 12 C 0.324 3.676 13 O -0.361 6.361 14 C -0.175 4.175 15 C -0.122 4.122 16 C -0.052 4.052 17 C -0.554 4.554 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.545 5.545 21 Si 0.708 3.292 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.190 1.190 25 H 0.086 0.914 26 H 0.029 0.971 27 H 0.075 0.925 28 H 0.178 0.822 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.032 0.968 40 H 0.028 0.972 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.137 23.089 9.271 24.881 hybrid contribution 0.371 0.732 -0.026 0.821 sum 0.508 23.821 9.244 25.557 Atomic orbital electron populations 1.22196 0.89118 1.01810 0.99118 1.60904 1.06142 1.11067 1.51776 1.22425 0.93709 0.91806 1.00249 1.21487 0.93990 0.89735 0.91228 0.90628 1.23268 0.97515 0.96833 1.01310 1.22630 0.98821 0.82519 0.91968 0.87921 1.92832 1.94979 1.51747 1.78589 1.22675 0.96272 0.91872 0.93658 1.48427 1.53105 1.09146 1.24998 1.20577 0.79754 0.79218 0.88008 1.90567 1.35771 1.63571 1.46221 1.21831 1.01284 0.99009 0.95369 1.21238 1.01214 0.89714 1.00072 1.19610 0.95522 0.96528 0.93569 1.21172 1.32349 0.92334 1.09578 0.90955 1.25046 0.95944 0.94731 0.97922 1.69922 1.46374 1.04410 1.33806 0.86771 0.81009 0.79422 0.82015 1.20378 1.21487 1.19040 0.91370 0.97145 0.92533 0.82217 0.95162 0.91210 0.89100 0.88996 0.89197 0.90404 0.89854 0.89979 0.92251 0.91962 0.96750 0.97236 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.70 60.07 0.64 0.96 16 2 N -0.66 -8.67 3.70 -121.13 -0.45 -9.12 16 3 C 0.05 0.50 5.30 -3.82 -0.02 0.48 16 4 C 0.14 1.32 3.30 -66.95 -0.22 1.10 16 5 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 6 C -0.15 -1.01 6.29 -24.89 -0.16 -1.17 16 7 C 0.08 0.58 4.84 -24.70 -0.12 0.46 16 8 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 9 F -0.20 -1.84 17.24 2.25 0.04 -1.80 16 10 C 0.08 0.72 6.50 -2.65 -0.02 0.70 16 11 N -0.62 -7.13 3.07 -163.15 -0.50 -7.63 16 12 C 0.53 8.16 7.39 -10.98 -0.08 8.08 16 13 O -0.49 -8.77 12.05 5.55 0.07 -8.70 16 14 C -0.13 -2.14 4.71 -27.88 -0.13 -2.27 16 15 C -0.08 -1.76 4.44 -26.74 -0.12 -1.88 16 16 C -0.01 -0.36 4.04 -27.88 -0.11 -0.47 16 17 C -0.52 -15.18 9.66 -34.44 -0.33 -15.51 16 18 H 0.07 2.31 7.99 -52.49 -0.42 1.89 16 19 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 20 N -0.91 -28.59 13.96 55.43 0.77 -27.81 16 21 Si 0.88 21.97 27.47 -169.99 -4.67 17.31 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.27 -6.31 6.54 56.52 0.37 -5.95 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.01 0.10 8.14 -51.93 -0.42 -0.32 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.36 4.90 7.32 -39.29 -0.29 4.61 16 29 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.74 8.02 -51.93 -0.42 0.32 16 31 H 0.09 0.60 7.77 -51.93 -0.40 0.20 16 32 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.75 7.47 -51.93 -0.39 0.36 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.08 1.16 7.83 -51.93 -0.41 0.75 16 37 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 38 H 0.06 1.39 8.10 -51.93 -0.42 0.97 16 39 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 40 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 41 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 329.84 15.07 4.97 4.97 Total: -1.00 -33.21 329.84 -7.44 -40.64 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -6.90 Total: -0.14 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -0.77 Total: -7.72 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: -0.18 Total: -44.56 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.07 Total: -8.70 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.21 -7.44 -40.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594444247.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.003 kcal (2) G-P(sol) polarization free energy of solvation -33.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds