Wall clock time and date at job start Mon Mar 30 2020 05:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46903 * 111.00137 * 2 1 4 4 C 1.53002 * 109.47078 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.99805 * 293.90229 * 4 3 2 6 6 C 1.54320 * 109.87962 * 172.80810 * 4 3 2 7 7 C 1.55164 * 102.94013 * 218.39021 * 6 4 3 8 8 H 1.09003 * 111.00156 * 277.42667 * 7 6 4 9 9 F 1.39897 * 111.00550 * 153.61763 * 7 6 4 10 10 C 1.54686 * 101.67477 * 35.33603 * 7 6 4 11 11 N 1.47025 * 109.88218 * 54.99777 * 4 3 2 12 12 C 1.34777 * 125.65000 * 298.32453 * 11 4 3 13 13 O 1.21283 * 119.99750 * 359.97438 * 12 11 4 14 14 C 1.50702 * 119.99928 * 180.27553 * 12 11 4 15 15 C 1.52996 * 109.47159 * 179.72352 * 14 12 11 16 16 C 1.52994 * 109.47118 * 179.97438 * 15 14 12 17 17 C 1.50708 * 109.47076 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99591 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99904 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99869 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00085 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47180 * 90.00070 * 21 19 17 23 23 H 1.48503 * 109.46903 * 210.00050 * 21 19 17 24 24 H 1.48498 * 109.47152 * 329.99815 * 21 19 17 25 25 H 1.08999 * 109.47253 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46768 * 300.00245 * 1 2 3 27 27 H 1.09000 * 109.46391 * 60.00082 * 1 2 3 28 28 H 1.00907 * 110.99680 * 123.95267 * 2 1 3 29 29 H 1.08998 * 109.47022 * 59.99664 * 3 2 1 30 30 H 1.09003 * 109.46970 * 299.99862 * 3 2 1 31 31 H 1.08996 * 110.72212 * 336.75060 * 6 4 3 32 32 H 1.09005 * 110.72088 * 100.03111 * 6 4 3 33 33 H 1.09005 * 110.39048 * 204.36578 * 10 7 6 34 34 H 1.09004 * 110.23918 * 82.11484 * 10 7 6 35 35 H 1.09004 * 109.46965 * 299.72211 * 14 12 11 36 36 H 1.08994 * 109.46990 * 59.72065 * 14 12 11 37 37 H 1.09004 * 109.47066 * 299.99797 * 15 14 12 38 38 H 1.09000 * 109.47234 * 59.99288 * 15 14 12 39 39 H 1.08998 * 109.46965 * 299.99512 * 16 15 14 40 40 H 1.09003 * 109.47184 * 60.00331 * 16 15 14 41 41 H 0.96996 * 120.00354 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5250 1.3306 0.0006 5 1 3.8861 0.9059 0.9373 6 6 4.0881 2.7558 -0.1810 7 6 5.3157 2.5296 -1.1027 8 1 6.1852 2.2156 -0.5251 9 9 5.6009 3.6780 -1.8490 10 6 4.8167 1.3825 -2.0127 11 7 4.0041 0.5242 -1.1316 12 6 3.7476 -0.7842 -1.3283 13 8 3.0680 -1.3955 -0.5312 14 6 4.3109 -1.4893 -2.5352 15 6 3.8791 -2.9569 -2.5163 16 6 4.4504 -3.6725 -3.7419 17 6 4.0255 -5.1183 -3.7228 18 1 3.4092 -5.4894 -2.9173 19 6 4.4227 -5.9670 -4.7343 20 7 4.0515 -7.2285 -4.7179 21 14 5.4880 -5.3248 -6.1279 22 1 6.9203 -5.4837 -5.7696 23 1 5.1993 -6.0926 -7.3658 24 1 5.1912 -3.8878 -6.3562 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.8306 -0.5261 0.7814 29 1 1.6460 1.8948 0.8899 30 1 1.6460 1.8948 -0.8900 31 1 3.3556 3.4010 -0.6660 32 1 4.3971 3.1735 0.7772 33 1 5.6608 0.8221 -2.4147 34 1 4.2055 1.7820 -2.8220 35 1 3.9378 -1.0124 -3.4416 36 1 5.3991 -1.4304 -2.5154 37 1 4.2522 -3.4337 -1.6099 38 1 2.7908 -3.0157 -2.5360 39 1 4.0768 -3.1956 -4.6480 40 1 5.5387 -3.6138 -3.7224 41 1 4.3311 -7.8256 -5.4293 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594444247.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:24 Heat of formation + Delta-G solvation = -96.592540 kcal Electronic energy + Delta-G solvation = -21547.110578 eV Core-core repulsion = 18182.709159 eV Total energy + Delta-G solvation = -3364.401420 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.62140 -41.09196 -38.40488 -36.49514 -35.99017 -34.07277 -32.48330 -30.85298 -29.93198 -27.04109 -25.81204 -24.51093 -23.06564 -22.37374 -21.57878 -19.88290 -18.82257 -18.29427 -18.01785 -16.84355 -16.60431 -16.19906 -16.03688 -15.98225 -15.70795 -15.24277 -15.05983 -14.75140 -14.63419 -14.12698 -13.84147 -13.79734 -13.61739 -13.25675 -13.08403 -12.94493 -12.62999 -12.59043 -12.40236 -12.17503 -11.77581 -11.75063 -11.61764 -11.57378 -11.43649 -11.28652 -10.73178 -10.39819 -9.64476 -8.93566 -8.26086 -6.31083 1.38978 1.42388 1.54533 1.92414 2.04469 2.40283 3.09117 3.15897 3.27639 3.47873 3.65299 3.88905 3.96917 4.08678 4.22454 4.27616 4.29932 4.42512 4.47137 4.52996 4.60075 4.65108 4.66775 4.81665 4.82948 4.95888 4.99265 5.00102 5.03979 5.09226 5.18877 5.46887 5.61344 5.64476 5.70531 6.20630 6.33119 6.58294 6.64369 6.77566 7.33132 7.51154 8.91619 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.019767 B = 0.004334 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.147907 B = 6459.135730 C = 7618.060942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.687 5.687 3 C 0.050 3.950 4 C 0.137 3.863 5 H 0.075 0.925 6 C -0.139 4.139 7 C 0.083 3.917 8 H 0.122 0.878 9 F -0.209 7.209 10 C 0.072 3.928 11 N -0.614 5.614 12 C 0.532 3.468 13 O -0.527 6.527 14 C -0.126 4.126 15 C -0.074 4.074 16 C -0.010 4.010 17 C -0.537 4.537 18 H 0.021 0.979 19 C -0.002 4.002 20 N -0.957 5.957 21 Si 0.959 3.041 22 H -0.263 1.263 23 H -0.286 1.286 24 H -0.239 1.239 25 H 0.052 0.948 26 H 0.027 0.973 27 H 0.056 0.944 28 H 0.348 0.652 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.039 0.961 38 H 0.035 0.965 39 H 0.025 0.975 40 H 0.027 0.973 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.398 27.127 8.844 28.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.322 5.322 3 C -0.080 4.080 4 C 0.033 3.967 5 H 0.093 0.907 6 C -0.178 4.178 7 C 0.046 3.954 8 H 0.139 0.861 9 F -0.190 7.190 10 C -0.051 4.051 11 N -0.350 5.350 12 C 0.321 3.679 13 O -0.401 6.401 14 C -0.166 4.166 15 C -0.112 4.112 16 C -0.047 4.047 17 C -0.575 4.575 18 H 0.039 0.961 19 C -0.198 4.198 20 N -0.598 5.598 21 Si 0.782 3.218 22 H -0.188 1.188 23 H -0.212 1.212 24 H -0.162 1.162 25 H 0.071 0.929 26 H 0.045 0.955 27 H 0.075 0.925 28 H 0.169 0.831 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.113 0.887 32 H 0.135 0.865 33 H 0.119 0.881 34 H 0.098 0.902 35 H 0.117 0.883 36 H 0.126 0.874 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.043 0.957 40 H 0.046 0.954 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.061 26.483 8.493 27.888 hybrid contribution -0.307 -0.347 0.297 0.551 sum 1.754 26.137 8.790 27.631 Atomic orbital electron populations 1.22138 0.88774 1.01090 0.99884 1.60862 1.06721 1.12797 1.51790 1.22461 0.94223 0.90435 1.00890 1.21662 0.93563 0.91012 0.90424 0.90715 1.23249 0.97129 0.94832 1.02542 1.22662 0.99723 0.81499 0.91479 0.86076 1.92822 1.95050 1.52175 1.78906 1.22884 0.96329 0.92237 0.93697 1.48267 1.52602 1.08285 1.25850 1.20371 0.79588 0.80469 0.87486 1.90575 1.37456 1.64855 1.47263 1.21655 1.02890 0.95363 0.96684 1.20974 0.99271 0.93169 0.97772 1.19549 0.96502 0.93329 0.95323 1.21549 1.31928 0.95549 1.08428 0.96100 1.26158 0.97582 0.94729 1.01311 1.70101 1.48171 1.06273 1.35259 0.85528 0.78960 0.80007 0.77343 1.18788 1.21198 1.16214 0.92904 0.95463 0.92501 0.83074 0.93329 0.91507 0.88705 0.86541 0.88101 0.90237 0.88271 0.87398 0.94238 0.94632 0.95664 0.95440 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.70 127.69 1.37 2.08 16 2 N -0.69 -17.90 3.70 -537.13 -1.99 -19.88 16 3 C 0.05 0.94 5.30 86.30 0.46 1.40 16 4 C 0.14 2.27 3.30 45.34 0.15 2.42 16 5 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 6 C -0.14 -1.38 6.29 31.78 0.20 -1.18 16 7 C 0.08 0.93 4.84 31.91 0.15 1.09 16 8 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 9 F -0.21 -3.13 17.24 44.97 0.78 -2.35 16 10 C 0.07 1.07 6.50 86.78 0.56 1.63 16 11 N -0.61 -12.84 3.07 -788.49 -2.42 -15.26 16 12 C 0.53 15.72 7.39 87.66 0.65 16.37 16 13 O -0.53 -19.19 12.05 -3.04 -0.04 -19.23 16 14 C -0.13 -3.78 4.71 29.85 0.14 -3.64 16 15 C -0.07 -3.11 4.44 30.59 0.14 -2.97 16 16 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 17 C -0.54 -32.55 9.66 25.60 0.25 -32.30 16 18 H 0.02 1.42 7.99 -2.91 -0.02 1.39 16 19 C 0.00 -0.12 5.47 84.65 0.46 0.34 16 20 N -0.96 -62.20 13.96 21.45 0.30 -61.90 16 21 Si 0.96 44.51 27.47 68.60 1.88 46.39 16 22 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 23 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 24 H -0.24 -10.01 6.54 99.48 0.65 -9.36 16 25 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.35 9.80 7.32 -89.69 -0.66 9.15 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 1.29 8.02 -2.39 -0.02 1.27 16 31 H 0.09 0.92 7.77 -2.39 -0.02 0.90 16 32 H 0.12 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.10 1.30 7.47 -2.38 -0.02 1.28 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.10 2.67 8.14 -2.38 -0.02 2.65 16 36 H 0.11 2.68 7.83 -2.39 -0.02 2.67 16 37 H 0.04 1.78 8.10 -2.38 -0.02 1.76 16 38 H 0.03 1.65 8.10 -2.39 -0.02 1.63 16 39 H 0.03 1.15 7.20 -2.39 -0.02 1.13 16 40 H 0.03 1.21 7.57 -2.39 -0.02 1.20 16 41 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 Total: -1.00 -75.24 329.84 3.45 -71.78 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.29 Total: 15.54 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: 4.65 Total: -15.09 kcal Atomic # 7 Polarization: -92.94 SS G_CDS: -4.11 Total: -97.05 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.04 Total: -19.23 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.78 Total: -2.35 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.88 Total: 46.39 kcal Total: -75.24 3.45 -71.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594444247.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.808 kcal (2) G-P(sol) polarization free energy of solvation -75.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds