Wall clock time and date at job start Mon Mar 30 2020 05:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 F 1.39893 * 108.49679 * 2 1 4 4 C 1.52479 * 108.55079 * 242.34799 * 2 1 3 5 5 N 1.43919 * 105.41361 * 148.44750 * 4 2 1 6 6 C 1.48820 * 112.04106 * 98.70889 * 5 4 2 7 7 C 1.54542 * 110.68468 * 320.99634 * 6 5 4 8 8 N 1.43662 * 116.16145 * 318.28342 * 7 6 5 9 9 C 1.34777 * 120.55581 * 269.12106 * 8 7 6 10 10 O 1.21277 * 119.99762 * 180.02562 * 9 8 7 11 11 C 1.50695 * 119.99713 * 0.02933 * 9 8 7 12 12 C 1.53005 * 109.46763 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.46887 * 179.97438 * 12 11 9 14 14 C 1.50700 * 109.46970 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00183 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99876 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00066 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00130 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47282 * 89.99315 * 18 16 14 20 20 H 1.48503 * 109.47205 * 209.99662 * 18 16 14 21 21 H 1.48505 * 109.46887 * 329.99617 * 18 16 14 22 22 C 1.46648 * 108.55607 * 117.79623 * 2 1 3 23 23 H 1.09001 * 109.47002 * 302.20448 * 1 2 3 24 24 H 1.08993 * 109.46955 * 62.20885 * 1 2 3 25 25 H 1.09000 * 109.47050 * 182.20714 * 1 2 3 26 26 H 1.08992 * 110.25028 * 267.42141 * 4 2 1 27 27 H 1.09002 * 110.24719 * 29.48032 * 4 2 1 28 28 H 1.00895 * 111.00286 * 333.98819 * 5 4 2 29 29 H 1.09002 * 109.23874 * 200.68791 * 6 5 4 30 30 H 1.08997 * 109.23976 * 81.30148 * 6 5 4 31 31 H 1.08998 * 108.14241 * 196.55119 * 7 6 5 32 32 H 1.09002 * 108.14298 * 80.01916 * 7 6 5 33 33 H 1.08998 * 109.47011 * 299.99230 * 11 9 8 34 34 H 1.08989 * 109.47500 * 59.99812 * 11 9 8 35 35 H 1.08998 * 109.46832 * 299.99468 * 12 11 9 36 36 H 1.08997 * 109.46936 * 60.00023 * 12 11 9 37 37 H 1.09001 * 109.47263 * 300.00141 * 13 12 11 38 38 H 1.09003 * 109.46846 * 60.00047 * 13 12 11 39 39 H 0.96997 * 119.99658 * 180.02562 * 17 16 14 40 40 H 1.09006 * 109.94774 * 298.69714 * 22 2 1 41 41 H 1.08995 * 109.95076 * 59.87220 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9739 1.3267 0.0000 4 6 2.0152 -0.6709 -1.2805 5 7 3.2577 -0.0215 -1.6054 6 6 4.4356 -0.8147 -1.1601 7 6 4.1667 -1.4660 0.2153 8 7 3.4985 -0.6439 1.1856 9 6 4.2069 0.1182 2.0423 10 8 3.6324 0.8080 2.8577 11 6 5.7128 0.1130 1.9869 12 6 6.2657 1.0564 3.0571 13 6 7.7947 1.0508 3.0012 14 6 8.3393 1.9795 4.0557 15 1 7.6626 2.5200 4.7009 16 6 9.7015 2.1398 4.1962 17 7 10.5256 1.4820 3.4102 18 14 10.3766 3.2916 5.5028 19 1 10.5854 2.5391 6.7659 20 1 11.6708 3.8568 5.0436 21 1 9.4102 4.3944 5.7376 22 6 1.9967 -0.6483 1.2298 23 1 -0.3633 0.5477 0.8696 24 1 -0.3633 0.4791 -0.9091 25 1 -0.3633 -1.0269 0.0396 26 1 2.1788 -1.7349 -1.1102 27 1 1.2912 -0.5225 -2.0817 28 1 3.2872 0.9132 -1.2267 29 1 5.3024 -0.1583 -1.0833 30 1 4.6408 -1.5952 -1.8928 31 1 5.1227 -1.7781 0.6357 32 1 3.5642 -2.3602 0.0555 33 1 6.0796 -0.8973 2.1681 34 1 6.0414 0.4479 1.0031 35 1 5.8989 2.0666 2.8754 36 1 5.9372 0.7219 4.0410 37 1 8.1612 0.0404 3.1830 38 1 8.1236 1.3850 2.0172 39 1 11.4839 1.5946 3.5093 40 1 1.6486 -0.0906 2.0993 41 1 1.6276 -1.6729 1.2732 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594444388.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:33 Heat of formation + Delta-G solvation = -79.865285 kcal Electronic energy + Delta-G solvation = -22022.137673 eV Core-core repulsion = 18658.461602 eV Total energy + Delta-G solvation = -3363.676071 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.24633 -40.13736 -37.82595 -34.49306 -34.39485 -33.93428 -31.97219 -28.85090 -28.36522 -26.54348 -25.80774 -23.74779 -22.06216 -20.91918 -20.20304 -18.77782 -17.32788 -17.17821 -16.71790 -16.28860 -16.13081 -15.35334 -14.97459 -14.57348 -14.38915 -14.08915 -13.91337 -13.44156 -13.11358 -13.06676 -12.78482 -12.59796 -12.42731 -12.20156 -11.88115 -11.71116 -11.69165 -11.36972 -11.20104 -11.05795 -10.78911 -10.58283 -10.52462 -9.68344 -9.67427 -9.26833 -9.08978 -9.01030 -8.43805 -8.31122 -5.96845 -3.98178 2.71599 2.85621 3.35640 3.41387 3.46512 3.98752 4.09002 4.22365 4.34890 4.47190 4.50209 4.64802 4.84045 4.85923 4.97927 5.09053 5.24455 5.27640 5.39281 5.41369 5.46546 5.48716 5.62330 5.63816 5.68044 5.72474 5.79113 6.21468 6.27810 6.71717 6.75946 6.92382 7.15529 7.18087 7.39490 7.71212 7.83812 8.03632 8.32540 8.47759 9.08723 9.65785 11.14667 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.034719 B = 0.003770 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.276824 B = 7425.331345 C = 7775.800146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.067 3.933 3 F -0.195 7.195 4 C 0.050 3.950 5 N -0.698 5.698 6 C 0.037 3.963 7 C 0.072 3.928 8 N -0.620 5.620 9 C 0.518 3.482 10 O -0.529 6.529 11 C -0.135 4.135 12 C -0.095 4.095 13 C 0.021 3.979 14 C -0.518 4.518 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.898 5.898 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.273 1.273 22 C 0.091 3.909 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.358 0.642 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.015 0.985 38 H 0.016 0.984 39 H 0.260 0.740 40 H 0.108 0.892 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.011 -9.523 -11.269 24.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.046 3.954 3 F -0.176 7.176 4 C -0.081 4.081 5 N -0.334 5.334 6 C -0.094 4.094 7 C -0.055 4.055 8 N -0.355 5.355 9 C 0.309 3.691 10 O -0.404 6.404 11 C -0.175 4.175 12 C -0.133 4.133 13 C -0.016 4.016 14 C -0.556 4.556 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.031 4.031 23 H 0.089 0.911 24 H 0.091 0.909 25 H 0.095 0.905 26 H 0.103 0.897 27 H 0.106 0.894 28 H 0.185 0.815 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.126 0.874 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -19.072 -9.340 -11.461 24.131 hybrid contribution 0.428 0.700 1.524 1.731 sum -18.643 -8.639 -9.937 22.825 Atomic orbital electron populations 1.22472 0.93092 1.03697 1.04058 1.20924 0.96121 0.79681 0.98702 1.92748 1.90396 1.37190 1.97224 1.22113 0.93157 0.99116 0.93762 1.60002 1.01055 1.07791 1.64555 1.23257 0.93789 0.98643 0.93719 1.21823 0.99440 0.93601 0.90603 1.48181 1.05478 1.46880 1.34936 1.21352 0.90922 0.77602 0.79272 1.90666 1.72269 1.40306 1.37135 1.21883 0.89085 1.03192 1.03309 1.21469 0.98914 0.97173 0.95785 1.19124 0.88134 0.97119 0.97189 1.21266 0.91548 1.25485 1.17313 0.92597 1.25015 0.97174 0.96090 0.96200 1.69963 1.02759 1.42381 1.38628 0.86593 0.78345 0.81210 0.81874 1.20689 1.21241 1.19827 1.21647 0.80767 1.02237 0.98477 0.91150 0.90864 0.90489 0.89666 0.89356 0.81507 0.90315 0.89476 0.89508 0.91134 0.89354 0.89427 0.92680 0.92739 0.96642 0.96585 0.93074 0.87356 0.89245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.19 8.61 37.16 0.32 -0.87 16 2 C 0.07 0.63 1.08 -93.92 -0.10 0.52 16 3 F -0.19 -2.62 14.19 2.25 0.03 -2.59 16 4 C 0.05 0.41 5.79 -5.68 -0.03 0.37 16 5 N -0.70 -7.23 6.81 -113.89 -0.78 -8.00 16 6 C 0.04 0.34 7.05 -1.95 -0.01 0.32 16 7 C 0.07 0.67 4.75 -4.74 -0.02 0.65 16 8 N -0.62 -7.63 2.56 -175.32 -0.45 -8.08 16 9 C 0.52 8.64 7.70 -10.99 -0.08 8.56 16 10 O -0.53 -10.86 15.46 5.56 0.09 -10.78 16 11 C -0.14 -2.29 4.27 -27.88 -0.12 -2.41 16 12 C -0.10 -2.10 4.44 -26.73 -0.12 -2.22 16 13 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 14 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 15 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 18 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 22 C 0.09 0.94 4.94 -4.98 -0.02 0.91 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.47 7.98 -51.93 -0.41 0.06 16 25 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.09 0.56 6.13 -51.93 -0.32 0.25 16 27 H 0.09 0.64 7.72 -51.93 -0.40 0.24 16 28 H 0.36 4.46 6.24 -39.29 -0.25 4.22 16 29 H 0.08 0.81 7.75 -51.93 -0.40 0.40 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 0.80 6.37 -51.93 -0.33 0.47 16 32 H 0.07 0.50 6.89 -51.93 -0.36 0.15 16 33 H 0.09 1.35 7.39 -51.93 -0.38 0.97 16 34 H 0.09 1.38 7.72 -51.94 -0.40 0.98 16 35 H 0.05 1.28 8.10 -51.93 -0.42 0.86 16 36 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.11 1.35 7.12 -51.93 -0.37 0.98 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 323.72 15.07 4.88 4.88 Total: -1.00 -33.93 323.72 -7.80 -41.73 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -6.54 Total: -0.21 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -0.75 Total: -7.66 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: -0.49 Total: -42.54 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.78 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.03 Total: -2.59 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.93 -7.80 -41.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594444388.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.131 kcal (2) G-P(sol) polarization free energy of solvation -33.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds