Wall clock time and date at job start Mon Mar 30 2020 05:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 F 1.39893 * 108.49679 * 2 1 4 4 C 1.52479 * 108.55079 * 242.34799 * 2 1 3 5 5 N 1.43919 * 105.41361 * 148.44750 * 4 2 1 6 6 C 1.48820 * 112.04106 * 98.70889 * 5 4 2 7 7 C 1.54542 * 110.68468 * 320.99634 * 6 5 4 8 8 N 1.43662 * 116.16145 * 318.28342 * 7 6 5 9 9 C 1.34777 * 120.55581 * 269.12106 * 8 7 6 10 10 O 1.21277 * 119.99762 * 180.02562 * 9 8 7 11 11 C 1.50695 * 119.99713 * 0.02933 * 9 8 7 12 12 C 1.53005 * 109.46763 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.46887 * 179.97438 * 12 11 9 14 14 C 1.50700 * 109.46970 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00183 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99876 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00066 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00130 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47282 * 89.99315 * 18 16 14 20 20 H 1.48503 * 109.47205 * 209.99662 * 18 16 14 21 21 H 1.48505 * 109.46887 * 329.99617 * 18 16 14 22 22 C 1.46648 * 108.55607 * 117.79623 * 2 1 3 23 23 H 1.09001 * 109.47002 * 302.20448 * 1 2 3 24 24 H 1.08993 * 109.46955 * 62.20885 * 1 2 3 25 25 H 1.09000 * 109.47050 * 182.20714 * 1 2 3 26 26 H 1.08992 * 110.25028 * 267.42141 * 4 2 1 27 27 H 1.09002 * 110.24719 * 29.48032 * 4 2 1 28 28 H 1.00895 * 111.00286 * 333.98819 * 5 4 2 29 29 H 1.09002 * 109.23874 * 200.68791 * 6 5 4 30 30 H 1.08997 * 109.23976 * 81.30148 * 6 5 4 31 31 H 1.08998 * 108.14241 * 196.55119 * 7 6 5 32 32 H 1.09002 * 108.14298 * 80.01916 * 7 6 5 33 33 H 1.08998 * 109.47011 * 299.99230 * 11 9 8 34 34 H 1.08989 * 109.47500 * 59.99812 * 11 9 8 35 35 H 1.08998 * 109.46832 * 299.99468 * 12 11 9 36 36 H 1.08997 * 109.46936 * 60.00023 * 12 11 9 37 37 H 1.09001 * 109.47263 * 300.00141 * 13 12 11 38 38 H 1.09003 * 109.46846 * 60.00047 * 13 12 11 39 39 H 0.96997 * 119.99658 * 180.02562 * 17 16 14 40 40 H 1.09006 * 109.94774 * 298.69714 * 22 2 1 41 41 H 1.08995 * 109.95076 * 59.87220 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9739 1.3267 0.0000 4 6 2.0152 -0.6709 -1.2805 5 7 3.2577 -0.0215 -1.6054 6 6 4.4356 -0.8147 -1.1601 7 6 4.1667 -1.4660 0.2153 8 7 3.4985 -0.6439 1.1856 9 6 4.2069 0.1182 2.0423 10 8 3.6324 0.8080 2.8577 11 6 5.7128 0.1130 1.9869 12 6 6.2657 1.0564 3.0571 13 6 7.7947 1.0508 3.0012 14 6 8.3393 1.9795 4.0557 15 1 7.6626 2.5200 4.7009 16 6 9.7015 2.1398 4.1962 17 7 10.5256 1.4820 3.4102 18 14 10.3766 3.2916 5.5028 19 1 10.5854 2.5391 6.7659 20 1 11.6708 3.8568 5.0436 21 1 9.4102 4.3944 5.7376 22 6 1.9967 -0.6483 1.2298 23 1 -0.3633 0.5477 0.8696 24 1 -0.3633 0.4791 -0.9091 25 1 -0.3633 -1.0269 0.0396 26 1 2.1788 -1.7349 -1.1102 27 1 1.2912 -0.5225 -2.0817 28 1 3.2872 0.9132 -1.2267 29 1 5.3024 -0.1583 -1.0833 30 1 4.6408 -1.5952 -1.8928 31 1 5.1227 -1.7781 0.6357 32 1 3.5642 -2.3602 0.0555 33 1 6.0796 -0.8973 2.1681 34 1 6.0414 0.4479 1.0031 35 1 5.8989 2.0666 2.8754 36 1 5.9372 0.7219 4.0410 37 1 8.1612 0.0404 3.1830 38 1 8.1236 1.3850 2.0172 39 1 11.4839 1.5946 3.5093 40 1 1.6486 -0.0906 2.0993 41 1 1.6276 -1.6729 1.2732 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594444388.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:32 Heat of formation + Delta-G solvation = -103.472149 kcal Electronic energy + Delta-G solvation = -22023.161343 eV Core-core repulsion = 18658.461602 eV Total energy + Delta-G solvation = -3364.699742 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.11899 -41.25452 -38.84543 -36.21788 -35.37079 -34.94543 -33.93224 -30.07245 -29.53444 -27.72258 -26.56450 -25.52261 -23.11774 -22.06889 -21.53652 -19.95131 -18.56313 -18.16660 -18.02504 -17.64165 -17.21895 -16.58321 -16.43481 -16.01454 -15.50435 -15.20794 -14.71567 -14.60668 -14.41576 -14.19592 -13.85504 -13.69804 -13.50154 -13.27076 -13.13731 -13.11601 -12.70429 -12.55749 -12.52049 -12.42680 -12.35466 -11.92861 -11.80907 -11.59062 -11.48259 -11.27120 -10.75082 -10.55852 -10.02910 -9.24547 -8.21700 -6.31836 1.38461 1.39682 1.51186 1.52011 1.78636 2.40484 3.11152 3.24422 3.38687 3.49505 3.63043 3.73479 3.80475 4.00435 4.11066 4.11781 4.18478 4.32563 4.40884 4.55277 4.61318 4.65732 4.74976 4.83762 4.84529 4.90623 5.00981 5.05354 5.07453 5.13886 5.15030 5.39118 5.51009 5.71507 5.83575 6.05685 6.24367 6.31162 6.32919 6.82780 7.08588 7.36811 8.89825 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.034719 B = 0.003770 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.276824 B = 7425.331345 C = 7775.800146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.059 3.941 3 F -0.223 7.223 4 C 0.053 3.947 5 N -0.709 5.709 6 C 0.038 3.962 7 C 0.063 3.937 8 N -0.609 5.609 9 C 0.517 3.483 10 O -0.579 6.579 11 C -0.126 4.126 12 C -0.082 4.082 13 C 0.029 3.971 14 C -0.550 4.550 15 H 0.049 0.951 16 C 0.005 3.995 17 N -0.928 5.928 18 Si 0.962 3.038 19 H -0.270 1.270 20 H -0.277 1.277 21 H -0.270 1.270 22 C 0.088 3.912 23 H 0.058 0.942 24 H 0.077 0.923 25 H 0.107 0.893 26 H 0.110 0.890 27 H 0.100 0.900 28 H 0.343 0.657 29 H 0.061 0.939 30 H 0.111 0.889 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.035 0.965 36 H 0.041 0.959 37 H 0.003 0.997 38 H 0.000 1.000 39 H 0.265 0.735 40 H 0.081 0.919 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.877 -11.169 -12.091 25.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.038 3.962 3 F -0.204 7.204 4 C -0.077 4.077 5 N -0.344 5.344 6 C -0.093 4.093 7 C -0.062 4.062 8 N -0.341 5.341 9 C 0.307 3.693 10 O -0.459 6.459 11 C -0.165 4.165 12 C -0.120 4.120 13 C -0.008 4.008 14 C -0.587 4.587 15 H 0.068 0.932 16 C -0.193 4.193 17 N -0.568 5.568 18 Si 0.786 3.214 19 H -0.196 1.196 20 H -0.202 1.202 21 H -0.194 1.194 22 C -0.033 4.033 23 H 0.077 0.923 24 H 0.096 0.904 25 H 0.126 0.874 26 H 0.128 0.872 27 H 0.118 0.882 28 H 0.168 0.832 29 H 0.080 0.920 30 H 0.129 0.871 31 H 0.108 0.892 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.118 0.882 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.022 0.978 38 H 0.018 0.982 39 H 0.074 0.926 40 H 0.099 0.901 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -19.958 -11.034 -12.331 25.926 hybrid contribution 0.675 1.163 1.710 2.175 sum -19.283 -9.871 -10.621 24.127 Atomic orbital electron populations 1.22451 0.90940 1.05567 1.03759 1.21219 0.97854 0.78196 0.98896 1.92703 1.90877 1.39526 1.97330 1.22247 0.92302 1.00015 0.93151 1.60058 1.02306 1.07382 1.64624 1.23317 0.92971 0.98805 0.94177 1.22106 1.00204 0.94096 0.89827 1.48135 1.06588 1.45411 1.34008 1.21147 0.90696 0.77834 0.79649 1.90647 1.72936 1.42714 1.39567 1.21689 0.89986 1.02935 1.01919 1.21169 0.96219 0.97541 0.97065 1.18993 0.90699 0.95640 0.95511 1.21669 0.92266 1.26488 1.18326 0.93239 1.25892 0.97370 0.97639 0.98433 1.70062 1.03251 1.43466 1.39991 0.85502 0.77761 0.79021 0.79109 1.19576 1.20173 1.19439 1.21892 0.79080 1.04337 0.97983 0.92335 0.90402 0.87445 0.87208 0.88184 0.83207 0.91997 0.87087 0.89205 0.87525 0.87191 0.88173 0.94613 0.94047 0.97843 0.98170 0.92597 0.90072 0.85129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 8.61 71.98 0.62 -1.30 16 2 C 0.06 1.00 1.08 -12.93 -0.01 0.98 16 3 F -0.22 -6.06 14.19 44.97 0.64 -5.42 16 4 C 0.05 0.70 5.79 86.69 0.50 1.20 16 5 N -0.71 -13.37 6.81 -514.25 -3.50 -16.87 16 6 C 0.04 0.61 7.05 86.46 0.61 1.22 16 7 C 0.06 0.98 4.75 87.43 0.42 1.40 16 8 N -0.61 -14.05 2.56 -826.99 -2.12 -16.17 16 9 C 0.52 17.31 7.70 87.66 0.67 17.98 16 10 O -0.58 -24.67 15.46 -3.02 -0.05 -24.72 16 11 C -0.13 -4.29 4.27 29.85 0.13 -4.16 16 12 C -0.08 -3.74 4.44 30.60 0.14 -3.61 16 13 C 0.03 1.55 4.97 29.85 0.15 1.70 16 14 C -0.55 -32.91 9.11 25.60 0.23 -32.67 16 15 H 0.05 2.95 7.74 -2.91 -0.02 2.92 16 16 C 0.00 0.28 5.46 84.65 0.46 0.75 16 17 N -0.93 -56.63 13.29 21.45 0.28 -56.34 16 18 Si 0.96 45.70 29.54 68.60 2.03 47.72 16 19 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 21 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 22 C 0.09 1.65 4.94 83.68 0.41 2.06 16 23 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.08 0.83 7.98 -2.39 -0.02 0.81 16 25 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.11 0.90 6.13 -2.39 -0.01 0.88 16 27 H 0.10 1.12 7.72 -2.39 -0.02 1.10 16 28 H 0.34 8.42 6.24 -89.70 -0.56 7.86 16 29 H 0.06 1.21 7.75 -2.39 -0.02 1.19 16 30 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.09 1.40 6.37 -2.39 -0.02 1.38 16 32 H 0.11 0.97 6.89 -2.39 -0.02 0.96 16 33 H 0.11 3.25 7.39 -2.39 -0.02 3.24 16 34 H 0.10 3.15 7.72 -2.39 -0.02 3.13 16 35 H 0.03 1.73 8.10 -2.39 -0.02 1.71 16 36 H 0.04 1.96 8.10 -2.39 -0.02 1.95 16 37 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 39 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 40 H 0.08 2.02 7.12 -2.38 -0.02 2.01 16 41 H 0.13 1.36 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -76.15 323.72 2.07 -74.08 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 0.46 Total: 12.17 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: 4.33 Total: -14.45 kcal Atomic # 7 Polarization: -84.04 SS G_CDS: -5.34 Total: -89.38 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.05 Total: -24.72 kcal Atomic # 9 Polarization: -6.06 SS G_CDS: 0.64 Total: -5.42 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -76.15 2.07 -74.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594444388.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.388 kcal (2) G-P(sol) polarization free energy of solvation -76.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds