Wall clock time and date at job start Mon Mar 30 2020 05:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.46877 * 2 1 4 4 N 1.46896 * 109.47633 * 120.00215 * 2 1 3 5 5 C 1.46904 * 110.99850 * 274.99884 * 4 2 1 6 6 C 1.50707 * 109.46888 * 179.97438 * 5 4 2 7 7 O 1.21290 * 119.99760 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99549 * 180.02562 * 6 5 4 9 9 C 1.37092 * 119.99669 * 180.02562 * 8 6 5 10 10 H 1.08006 * 120.00003 * 359.97438 * 9 8 6 11 11 C 1.38947 * 120.00183 * 179.97438 * 9 8 6 12 12 N 1.31413 * 119.99809 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00257 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46912 * 60.00207 * 13 11 9 15 15 H 1.48503 * 109.47157 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47196 * 300.00511 * 13 11 9 17 17 C 1.53002 * 109.47005 * 240.00527 * 2 1 3 18 18 C 1.52997 * 109.46817 * 304.99460 * 17 2 1 19 19 C 1.52999 * 109.47317 * 179.97438 * 18 17 2 20 20 C 1.53005 * 109.47159 * 300.00546 * 19 18 17 21 21 F 1.39900 * 109.46972 * 179.97438 * 20 19 18 22 22 C 1.52997 * 109.47452 * 59.99536 * 20 19 18 23 23 C 1.53000 * 109.47233 * 64.99266 * 17 2 1 24 24 H 1.09003 * 109.46952 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47027 * 299.99508 * 1 2 3 26 26 H 1.08997 * 109.47805 * 60.00035 * 1 2 3 27 27 H 1.00906 * 110.99670 * 38.95289 * 4 2 1 28 28 H 1.08997 * 109.47107 * 300.00130 * 5 4 2 29 29 H 1.09004 * 109.46949 * 60.00337 * 5 4 2 30 30 H 0.96999 * 120.00197 * 0.02562 * 8 6 5 31 31 H 0.97000 * 120.00178 * 179.97438 * 12 11 9 32 32 H 1.09002 * 109.47070 * 184.99640 * 17 2 1 33 33 H 1.08996 * 109.47853 * 300.00202 * 18 17 2 34 34 H 1.09002 * 109.47153 * 60.00231 * 18 17 2 35 35 H 1.09000 * 109.47486 * 180.02562 * 19 18 17 36 36 H 1.09002 * 109.46716 * 60.00091 * 19 18 17 37 37 H 1.09002 * 109.46935 * 299.99411 * 20 19 18 38 38 H 1.08993 * 109.47194 * 179.97438 * 22 20 19 39 39 H 1.09002 * 109.46695 * 59.99734 * 22 20 19 40 40 H 1.08992 * 109.47399 * 300.00166 * 23 17 2 41 41 H 1.09004 * 109.46724 * 60.00652 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0198 -0.6925 1.1993 5 6 2.0826 0.2226 2.3468 6 6 2.5876 -0.5219 3.5559 7 8 2.8680 -1.6988 3.4700 8 7 2.7276 0.1202 4.7326 9 6 3.1875 -0.5569 5.8324 10 1 3.4372 -1.6049 5.7560 11 6 3.3324 0.1051 7.0454 12 7 3.0281 1.3801 7.1386 13 14 3.9583 -0.8176 8.5442 14 1 5.3143 -1.3544 8.2642 15 1 4.0213 0.1073 9.7043 16 1 3.0365 -1.9395 8.8555 17 6 2.0400 -0.7211 -1.2493 18 6 1.4300 -2.1228 -1.3138 19 6 1.9394 -2.8438 -2.5634 20 6 1.5340 -2.0533 -3.8091 21 9 2.0003 -2.7123 -4.9517 22 6 2.1440 -0.6517 -3.7447 23 6 1.6350 0.0690 -2.4954 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.4496 -1.4980 1.4099 28 1 2.7589 1.0462 2.1181 29 1 1.0872 0.6162 2.5526 30 1 2.5030 1.0613 4.8014 31 1 3.1288 1.8422 7.9855 32 1 3.1263 -0.7993 -1.2057 33 1 1.7183 -2.6858 -0.4261 34 1 0.3436 -2.0446 -1.3574 35 1 1.5044 -3.8422 -2.6095 36 1 3.0257 -2.9219 -2.5202 37 1 0.4477 -1.9752 -3.8523 38 1 1.8557 -0.0888 -4.6324 39 1 3.2304 -0.7299 -3.7015 40 1 0.5488 0.1472 -2.5390 41 1 2.0697 1.0676 -2.4494 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595817641.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:35 Heat of formation + Delta-G solvation = -115.492469 kcal Electronic energy + Delta-G solvation = -21111.610777 eV Core-core repulsion = 17746.389795 eV Total energy + Delta-G solvation = -3365.220982 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -47.76646 -39.34300 -38.08420 -35.61603 -33.87966 -31.50330 -31.14580 -30.98003 -28.22400 -26.41505 -24.30218 -23.46441 -22.73054 -20.96167 -19.40521 -19.13059 -17.88670 -16.43985 -16.08172 -15.93002 -15.44928 -15.16854 -14.80132 -14.60969 -14.31184 -13.99400 -13.73111 -13.69708 -13.36119 -12.89237 -12.47971 -12.43668 -12.22354 -11.95353 -11.81083 -11.57527 -11.55274 -11.44658 -11.04576 -11.00237 -10.81080 -10.64380 -10.43951 -10.24663 -10.18712 -10.07506 -9.49278 -8.43603 -8.00924 -7.94060 -6.41022 -3.81861 3.20556 3.26058 3.30588 3.92381 4.08141 4.26280 4.29497 4.41593 4.45519 4.70175 4.81241 4.99600 5.05596 5.16083 5.18519 5.23409 5.25019 5.31454 5.35034 5.46419 5.51342 5.68097 5.73127 5.77408 5.87755 5.91647 5.92945 5.97888 6.02595 6.09590 6.15845 6.25805 6.32204 6.42904 7.29149 7.55584 7.71520 8.07108 8.62343 9.18633 9.55413 10.07071 10.76736 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.044180 B = 0.003048 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.620172 B = 9183.181794 C = 9532.526878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.088 3.912 3 H 0.076 0.924 4 N -0.662 5.662 5 C 0.050 3.950 6 C 0.441 3.559 7 O -0.584 6.584 8 N -0.564 5.564 9 C -0.300 4.300 10 H 0.102 0.898 11 C 0.022 3.978 12 N -0.903 5.903 13 Si 0.931 3.069 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.274 1.274 17 C -0.077 4.077 18 C -0.114 4.114 19 C -0.144 4.144 20 C 0.090 3.910 21 F -0.220 7.220 22 C -0.143 4.143 23 C -0.113 4.113 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.349 0.651 28 H 0.085 0.915 29 H 0.042 0.958 30 H 0.392 0.608 31 H 0.272 0.728 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.884 -0.001 -18.789 19.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.023 4.023 3 H 0.095 0.905 4 N -0.294 5.294 5 C -0.082 4.082 6 C 0.226 3.774 7 O -0.468 6.468 8 N -0.201 5.201 9 C -0.429 4.429 10 H 0.120 0.880 11 C -0.179 4.179 12 N -0.544 5.544 13 Si 0.758 3.242 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.199 1.199 17 C -0.096 4.096 18 C -0.152 4.152 19 C -0.182 4.182 20 C 0.054 3.946 21 F -0.201 7.201 22 C -0.181 4.181 23 C -0.151 4.151 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.169 0.831 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.225 0.775 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.002 -0.605 -18.842 19.504 hybrid contribution -0.771 0.350 1.025 1.330 sum -5.773 -0.255 -17.816 18.730 Atomic orbital electron populations 1.22652 0.97791 1.02331 1.01983 1.21569 0.92253 0.97814 0.90643 0.90536 1.60188 1.57669 1.09052 1.02517 1.21700 0.99786 0.95767 0.90971 1.19850 0.85081 0.88246 0.84196 1.90518 1.55295 1.16312 1.84648 1.41861 1.57833 1.12462 1.07952 1.19657 1.40037 0.96428 0.86807 0.87994 1.25255 0.97664 0.95772 0.99236 1.69605 1.48702 1.08871 1.27249 0.85921 0.79472 0.78815 0.80037 1.19870 1.20988 1.19931 1.21176 1.01409 0.94297 0.92707 1.21596 1.00170 0.95948 0.97474 1.22122 1.02773 0.99260 0.93998 1.21652 0.98922 0.91958 0.82080 1.92796 1.90917 1.82989 1.53376 1.22091 1.01937 0.94852 0.99191 1.21577 1.01232 0.99021 0.93304 0.92022 0.92740 0.92090 0.83133 0.89720 0.93974 0.77482 0.91838 0.89985 0.90098 0.91758 0.91070 0.90673 0.90268 0.91118 0.90712 0.91507 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.88 8.43 37.16 0.31 -1.57 16 2 C 0.09 1.00 2.37 -67.71 -0.16 0.84 16 3 H 0.08 0.87 7.80 -51.92 -0.40 0.47 16 4 N -0.66 -10.27 5.53 -107.98 -0.60 -10.87 16 5 C 0.05 0.88 5.97 -4.97 -0.03 0.85 16 6 C 0.44 10.39 7.82 -10.98 -0.09 10.30 16 7 O -0.58 -15.83 15.78 5.55 0.09 -15.74 16 8 N -0.56 -14.34 5.29 -10.96 -0.06 -14.40 16 9 C -0.30 -8.40 9.68 -14.94 -0.14 -8.54 16 10 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 11 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 12 N -0.90 -24.62 13.05 55.50 0.72 -23.90 16 13 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 14 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 17 C -0.08 -0.78 2.17 -90.62 -0.20 -0.98 16 18 C -0.11 -1.13 4.53 -26.73 -0.12 -1.25 16 19 C -0.14 -1.36 5.66 -26.73 -0.15 -1.51 16 20 C 0.09 0.82 3.88 -26.73 -0.10 0.71 16 21 F -0.22 -2.51 17.08 2.25 0.04 -2.47 16 22 C -0.14 -1.18 5.66 -26.76 -0.15 -1.33 16 23 C -0.11 -0.92 4.96 -26.76 -0.13 -1.05 16 24 H 0.06 0.60 6.33 -51.93 -0.33 0.28 16 25 H 0.05 0.59 7.45 -51.93 -0.39 0.20 16 26 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 27 H 0.35 5.64 7.50 -39.29 -0.29 5.35 16 28 H 0.08 1.37 8.05 -51.93 -0.42 0.95 16 29 H 0.04 0.67 7.44 -51.93 -0.39 0.28 16 30 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 31 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.08 0.94 7.33 -51.93 -0.38 0.56 16 34 H 0.06 0.57 6.35 -51.93 -0.33 0.24 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.49 6.56 -51.93 -0.34 0.15 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 325.96 15.07 4.91 4.91 Total: -1.00 -30.54 325.96 -7.38 -37.92 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -6.40 Total: 11.47 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -1.06 Total: -3.02 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: 0.07 Total: -49.17 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: 0.09 Total: -15.74 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.04 Total: -2.47 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.54 -7.38 -37.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595817641.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.573 kcal (2) G-P(sol) polarization free energy of solvation -30.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds