Wall clock time and date at job start Mon Mar 30 2020 05:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.46877 * 2 1 4 4 N 1.46896 * 109.47633 * 120.00215 * 2 1 3 5 5 C 1.46904 * 110.99850 * 274.99884 * 4 2 1 6 6 C 1.50707 * 109.46888 * 179.97438 * 5 4 2 7 7 O 1.21290 * 119.99760 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99549 * 180.02562 * 6 5 4 9 9 C 1.37092 * 119.99669 * 180.02562 * 8 6 5 10 10 H 1.08006 * 120.00003 * 359.97438 * 9 8 6 11 11 C 1.38947 * 120.00183 * 179.97438 * 9 8 6 12 12 N 1.31413 * 119.99809 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00257 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46912 * 60.00207 * 13 11 9 15 15 H 1.48503 * 109.47157 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47196 * 300.00511 * 13 11 9 17 17 C 1.53002 * 109.47005 * 240.00527 * 2 1 3 18 18 C 1.52997 * 109.46817 * 304.99460 * 17 2 1 19 19 C 1.52999 * 109.47317 * 179.97438 * 18 17 2 20 20 C 1.53005 * 109.47159 * 300.00546 * 19 18 17 21 21 F 1.39900 * 109.46972 * 179.97438 * 20 19 18 22 22 C 1.52997 * 109.47452 * 59.99536 * 20 19 18 23 23 C 1.53000 * 109.47233 * 64.99266 * 17 2 1 24 24 H 1.09003 * 109.46952 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47027 * 299.99508 * 1 2 3 26 26 H 1.08997 * 109.47805 * 60.00035 * 1 2 3 27 27 H 1.00906 * 110.99670 * 38.95289 * 4 2 1 28 28 H 1.08997 * 109.47107 * 300.00130 * 5 4 2 29 29 H 1.09004 * 109.46949 * 60.00337 * 5 4 2 30 30 H 0.96999 * 120.00197 * 0.02562 * 8 6 5 31 31 H 0.97000 * 120.00178 * 179.97438 * 12 11 9 32 32 H 1.09002 * 109.47070 * 184.99640 * 17 2 1 33 33 H 1.08996 * 109.47853 * 300.00202 * 18 17 2 34 34 H 1.09002 * 109.47153 * 60.00231 * 18 17 2 35 35 H 1.09000 * 109.47486 * 180.02562 * 19 18 17 36 36 H 1.09002 * 109.46716 * 60.00091 * 19 18 17 37 37 H 1.09002 * 109.46935 * 299.99411 * 20 19 18 38 38 H 1.08993 * 109.47194 * 179.97438 * 22 20 19 39 39 H 1.09002 * 109.46695 * 59.99734 * 22 20 19 40 40 H 1.08992 * 109.47399 * 300.00166 * 23 17 2 41 41 H 1.09004 * 109.46724 * 60.00652 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0198 -0.6925 1.1993 5 6 2.0826 0.2226 2.3468 6 6 2.5876 -0.5219 3.5559 7 8 2.8680 -1.6988 3.4700 8 7 2.7276 0.1202 4.7326 9 6 3.1875 -0.5569 5.8324 10 1 3.4372 -1.6049 5.7560 11 6 3.3324 0.1051 7.0454 12 7 3.0281 1.3801 7.1386 13 14 3.9583 -0.8176 8.5442 14 1 5.3143 -1.3544 8.2642 15 1 4.0213 0.1073 9.7043 16 1 3.0365 -1.9395 8.8555 17 6 2.0400 -0.7211 -1.2493 18 6 1.4300 -2.1228 -1.3138 19 6 1.9394 -2.8438 -2.5634 20 6 1.5340 -2.0533 -3.8091 21 9 2.0003 -2.7123 -4.9517 22 6 2.1440 -0.6517 -3.7447 23 6 1.6350 0.0690 -2.4954 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.4496 -1.4980 1.4099 28 1 2.7589 1.0462 2.1181 29 1 1.0872 0.6162 2.5526 30 1 2.5030 1.0613 4.8014 31 1 3.1288 1.8422 7.9855 32 1 3.1263 -0.7993 -1.2057 33 1 1.7183 -2.6858 -0.4261 34 1 0.3436 -2.0446 -1.3574 35 1 1.5044 -3.8422 -2.6095 36 1 3.0257 -2.9219 -2.5202 37 1 0.4477 -1.9752 -3.8523 38 1 1.8557 -0.0888 -4.6324 39 1 3.2304 -0.7299 -3.7015 40 1 0.5488 0.1472 -2.5390 41 1 2.0697 1.0676 -2.4494 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595817641.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:35 Heat of formation + Delta-G solvation = -135.609988 kcal Electronic energy + Delta-G solvation = -21112.483138 eV Core-core repulsion = 17746.389795 eV Total energy + Delta-G solvation = -3366.093343 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.57634 -40.43987 -39.70216 -36.74662 -35.85763 -33.30000 -32.40890 -31.78389 -29.09721 -27.96891 -25.93487 -24.38130 -23.56999 -21.75646 -21.10441 -20.11789 -19.89402 -17.81140 -17.16364 -16.85756 -16.68941 -16.37675 -16.11338 -15.91364 -15.67962 -15.39175 -14.86486 -14.68502 -14.58240 -14.05241 -13.70296 -13.53732 -13.34051 -13.16993 -13.04911 -12.80602 -12.68155 -12.63421 -12.43613 -12.28633 -12.12823 -11.80588 -11.56204 -11.51413 -11.48575 -11.02802 -10.82798 -10.31934 -10.01567 -9.21778 -8.46670 -5.95504 1.39714 1.41458 1.52448 2.06070 2.29274 2.95184 3.20701 3.52616 3.58787 3.64957 3.71331 3.97262 4.03037 4.23621 4.27795 4.33696 4.43337 4.45777 4.49084 4.51309 4.57670 4.63537 4.70047 4.79440 4.96709 5.00674 5.09570 5.17417 5.22184 5.26495 5.28622 5.35426 5.40476 5.48523 5.63025 5.93709 6.18821 6.49561 6.60625 7.12654 7.56730 8.12240 8.70594 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.044180 B = 0.003048 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.620172 B = 9183.181794 C = 9532.526878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.088 3.912 3 H 0.082 0.918 4 N -0.677 5.677 5 C 0.066 3.934 6 C 0.437 3.563 7 O -0.624 6.624 8 N -0.574 5.574 9 C -0.335 4.335 10 H 0.078 0.922 11 C -0.013 4.013 12 N -0.921 5.921 13 Si 0.992 3.008 14 H -0.272 1.272 15 H -0.270 1.270 16 H -0.271 1.271 17 C -0.073 4.073 18 C -0.109 4.109 19 C -0.142 4.142 20 C 0.087 3.913 21 F -0.234 7.234 22 C -0.140 4.140 23 C -0.105 4.105 24 H 0.061 0.939 25 H 0.046 0.954 26 H 0.084 0.916 27 H 0.343 0.657 28 H 0.101 0.899 29 H 0.065 0.935 30 H 0.396 0.604 31 H 0.278 0.722 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.083 0.917 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.902 1.015 -19.579 20.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.021 4.021 3 H 0.101 0.899 4 N -0.309 5.309 5 C -0.066 4.066 6 C 0.225 3.775 7 O -0.510 6.510 8 N -0.211 5.211 9 C -0.465 4.465 10 H 0.096 0.904 11 C -0.212 4.212 12 N -0.562 5.562 13 Si 0.816 3.184 14 H -0.198 1.198 15 H -0.194 1.194 16 H -0.197 1.197 17 C -0.092 4.092 18 C -0.147 4.147 19 C -0.180 4.180 20 C 0.052 3.948 21 F -0.215 7.215 22 C -0.178 4.178 23 C -0.143 4.143 24 H 0.080 0.920 25 H 0.065 0.935 26 H 0.103 0.897 27 H 0.162 0.838 28 H 0.119 0.881 29 H 0.082 0.918 30 H 0.230 0.770 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.117 0.883 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.102 0.898 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.029 0.441 -19.654 20.563 hybrid contribution -0.447 0.014 1.217 1.297 sum -6.477 0.455 -18.437 19.547 Atomic orbital electron populations 1.22589 0.96129 1.02665 1.02811 1.21673 0.93564 0.97741 0.89132 0.89941 1.60198 1.58686 1.09068 1.02979 1.21547 1.00856 0.95409 0.88830 1.20956 0.83358 0.88035 0.85196 1.90486 1.56648 1.18395 1.85490 1.41935 1.58356 1.12611 1.08209 1.19635 1.42284 0.95973 0.88612 0.90382 1.26032 0.97202 0.96619 1.01370 1.69664 1.48600 1.09701 1.28206 0.85000 0.78727 0.77858 0.76826 1.19768 1.19427 1.19652 1.21116 1.00072 0.94699 0.93314 1.21527 1.01062 0.95547 0.96552 1.22085 1.01914 0.99640 0.94362 1.21805 1.00074 0.91991 0.80978 1.92769 1.91200 1.83388 1.54151 1.22073 1.01320 0.94513 0.99896 1.21526 1.02269 0.98823 0.91679 0.91959 0.93461 0.89674 0.83819 0.88091 0.91756 0.76991 0.91276 0.92166 0.92452 0.90161 0.90838 0.92076 0.88285 0.89715 0.91737 0.89814 0.90355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.15 8.43 71.98 0.61 -2.54 16 2 C 0.09 1.86 2.37 44.92 0.11 1.96 16 3 H 0.08 1.66 7.80 -2.38 -0.02 1.64 16 4 N -0.68 -20.61 5.53 -495.55 -2.74 -23.35 16 5 C 0.07 2.24 5.97 85.56 0.51 2.75 16 6 C 0.44 20.88 7.82 87.66 0.69 21.57 16 7 O -0.62 -34.80 15.78 -3.06 -0.05 -34.85 16 8 N -0.57 -29.63 5.29 -306.98 -1.62 -31.25 16 9 C -0.34 -19.21 9.68 84.04 0.81 -18.39 16 10 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 11 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 12 N -0.92 -49.85 13.05 21.66 0.28 -49.56 16 13 Si 0.99 43.09 29.55 68.60 2.03 45.11 16 14 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 15 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 16 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 17 C -0.07 -1.37 2.17 -10.79 -0.02 -1.40 16 18 C -0.11 -2.05 4.53 30.59 0.14 -1.92 16 19 C -0.14 -2.60 5.66 30.60 0.17 -2.43 16 20 C 0.09 1.43 3.88 30.60 0.12 1.54 16 21 F -0.23 -5.06 17.08 44.97 0.77 -4.30 16 22 C -0.14 -2.02 5.66 30.58 0.17 -1.84 16 23 C -0.11 -1.40 4.96 30.58 0.15 -1.25 16 24 H 0.06 1.07 6.33 -2.39 -0.02 1.06 16 25 H 0.05 0.89 7.45 -2.39 -0.02 0.88 16 26 H 0.08 1.07 6.56 -2.39 -0.02 1.05 16 27 H 0.34 11.10 7.50 -89.69 -0.67 10.43 16 28 H 0.10 3.12 8.05 -2.39 -0.02 3.10 16 29 H 0.06 1.92 7.44 -2.38 -0.02 1.90 16 30 H 0.40 19.38 7.90 -92.71 -0.73 18.65 16 31 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.06 1.36 7.33 -2.39 -0.02 1.34 16 34 H 0.08 1.25 6.35 -2.39 -0.02 1.23 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.08 0.88 6.56 -2.39 -0.02 0.86 16 41 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -66.48 325.96 2.22 -64.26 By element: Atomic # 1 Polarization: 36.46 SS G_CDS: -0.36 Total: 36.09 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: 3.92 Total: -2.15 kcal Atomic # 7 Polarization: -100.09 SS G_CDS: -4.08 Total: -104.17 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -0.05 Total: -34.85 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 0.77 Total: -4.30 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -66.48 2.22 -64.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595817641.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.351 kcal (2) G-P(sol) polarization free energy of solvation -66.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds