Wall clock time and date at job start Mon Mar 30 2020 05:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47134 * 2 1 4 4 N 1.46901 * 109.46830 * 240.00491 * 2 1 3 5 5 C 1.46902 * 110.99844 * 84.99930 * 4 2 1 6 6 C 1.50702 * 109.47027 * 179.97438 * 5 4 2 7 7 O 1.21293 * 120.00255 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99928 * 179.72353 * 6 5 4 9 9 C 1.37101 * 120.00327 * 180.27606 * 8 6 5 10 10 H 1.08001 * 119.99426 * 0.02562 * 9 8 6 11 11 C 1.38942 * 120.00412 * 180.02562 * 9 8 6 12 12 N 1.31411 * 120.00042 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 120.00013 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47483 * 89.99599 * 13 11 9 15 15 H 1.48494 * 109.47201 * 209.99761 * 13 11 9 16 16 H 1.48507 * 109.46904 * 329.99936 * 13 11 9 17 17 C 1.52995 * 109.47243 * 120.00882 * 2 1 3 18 18 C 1.53004 * 109.47239 * 59.99686 * 17 2 1 19 19 C 1.53000 * 109.46653 * 180.02562 * 18 17 2 20 20 C 1.52998 * 109.47318 * 60.00419 * 19 18 17 21 21 F 1.39902 * 109.46870 * 179.97438 * 20 19 18 22 22 C 1.52996 * 109.46843 * 299.99216 * 20 19 18 23 23 C 1.52998 * 109.47001 * 299.99676 * 17 2 1 24 24 H 1.09001 * 109.47089 * 299.99716 * 1 2 3 25 25 H 1.09004 * 109.47615 * 59.99461 * 1 2 3 26 26 H 1.09000 * 109.47422 * 179.97438 * 1 2 3 27 27 H 1.00895 * 111.00207 * 208.95273 * 4 2 1 28 28 H 1.09004 * 109.47131 * 60.00016 * 5 4 2 29 29 H 1.08994 * 109.47471 * 299.99766 * 5 4 2 30 30 H 0.97000 * 120.00317 * 0.28382 * 8 6 5 31 31 H 0.97005 * 120.00014 * 180.02562 * 12 11 9 32 32 H 1.08994 * 109.47231 * 179.97438 * 17 2 1 33 33 H 1.08999 * 109.46649 * 299.99744 * 18 17 2 34 34 H 1.08996 * 109.46932 * 60.00179 * 18 17 2 35 35 H 1.08999 * 109.47202 * 299.99182 * 19 18 17 36 36 H 1.09008 * 109.46675 * 180.02562 * 19 18 17 37 37 H 1.08994 * 109.47333 * 59.99481 * 20 19 18 38 38 H 1.09006 * 109.47491 * 300.00640 * 22 20 19 39 39 H 1.09001 * 109.47238 * 179.97438 * 22 20 19 40 40 H 1.09008 * 109.47233 * 300.00164 * 23 17 2 41 41 H 1.09008 * 109.47443 * 59.99857 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 2.0823 0.2228 -2.3469 6 6 2.5883 -0.5212 -3.5558 7 8 2.8686 -1.6982 -3.4702 8 7 2.7236 0.1198 -4.7337 9 6 3.1785 -0.5584 -5.8350 10 1 3.4281 -1.6064 -5.7586 11 6 3.3185 0.1025 -7.0491 12 7 3.7541 -0.5478 -8.1047 13 14 2.8875 1.9153 -7.1809 14 1 4.0900 2.7332 -6.8802 15 1 2.4176 2.2136 -8.5576 16 1 1.8123 2.2403 -6.2094 17 6 2.0400 -0.7214 1.2491 18 6 1.5299 -2.1639 1.2489 19 6 2.0395 -2.8851 2.4984 20 6 1.5290 -2.1638 3.7474 21 9 1.9945 -2.8236 4.8899 22 6 2.0391 -0.7214 3.7476 23 6 1.5301 -0.0003 2.4984 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 2.9172 -1.1204 -1.0289 28 1 2.7587 1.0464 -2.1182 29 1 1.0870 0.6165 -2.5525 30 1 2.4992 1.0610 -4.8023 31 1 3.8522 -0.0863 -8.9523 32 1 3.1299 -0.7218 1.2489 33 1 0.4399 -2.1638 1.2490 34 1 1.8932 -2.6776 0.3589 35 1 3.1295 -2.8852 2.4987 36 1 1.6765 -3.9129 2.4981 37 1 0.4391 -2.1638 3.7470 38 1 3.1291 -0.7214 3.7479 39 1 1.6750 -0.2073 4.6372 40 1 1.8934 1.0274 2.4985 41 1 0.4400 -0.0002 2.4985 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595817642.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:38 Heat of formation + Delta-G solvation = -107.474547 kcal Electronic energy + Delta-G solvation = -21176.982072 eV Core-core repulsion = 17812.108774 eV Total energy + Delta-G solvation = -3364.873299 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -47.80114 -39.43094 -38.27148 -35.60999 -33.93492 -31.75390 -31.44357 -31.07349 -28.30637 -26.77228 -24.24662 -23.28541 -22.68187 -20.90387 -19.47432 -19.27400 -18.33683 -16.53601 -16.19336 -15.98994 -15.43917 -15.38194 -15.08050 -14.72519 -14.40833 -13.97667 -13.86054 -13.53081 -13.07163 -12.89391 -12.69476 -12.48448 -12.22143 -12.16734 -11.92572 -11.91613 -11.69025 -11.54085 -11.17793 -11.05482 -10.87409 -10.61094 -10.59179 -10.27342 -10.17368 -9.97388 -9.57036 -8.56408 -8.19197 -8.11653 -6.31020 -3.82409 3.02449 3.06270 3.14696 3.74992 4.03777 4.10453 4.20915 4.35211 4.37609 4.60012 4.74670 4.80823 4.95048 5.01013 5.14269 5.18242 5.21785 5.24707 5.36616 5.47044 5.52708 5.61089 5.65094 5.71385 5.77825 5.83969 5.88964 5.92619 5.94258 5.95060 6.04301 6.16417 6.27695 6.41349 7.16423 7.58503 7.61864 8.14972 8.60203 8.95317 9.42841 9.83436 10.82206 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.042578 B = 0.003229 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.452548 B = 8668.484494 C = 9057.921853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.087 3.913 3 H 0.041 0.959 4 N -0.662 5.662 5 C 0.048 3.952 6 C 0.450 3.550 7 O -0.564 6.564 8 N -0.592 5.592 9 C -0.305 4.305 10 H 0.119 0.881 11 C 0.041 3.959 12 N -0.882 5.882 13 Si 0.880 3.120 14 H -0.271 1.271 15 H -0.277 1.277 16 H -0.269 1.269 17 C -0.090 4.090 18 C -0.109 4.109 19 C -0.146 4.146 20 C 0.090 3.910 21 F -0.220 7.220 22 C -0.143 4.143 23 C -0.112 4.112 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.350 0.650 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.370 0.630 31 H 0.273 0.727 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.129 4.706 21.945 23.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.022 4.022 3 H 0.059 0.941 4 N -0.296 5.296 5 C -0.085 4.085 6 C 0.236 3.764 7 O -0.446 6.446 8 N -0.231 5.231 9 C -0.433 4.433 10 H 0.137 0.863 11 C -0.162 4.162 12 N -0.522 5.522 13 Si 0.706 3.294 14 H -0.197 1.197 15 H -0.202 1.202 16 H -0.195 1.195 17 C -0.109 4.109 18 C -0.147 4.147 19 C -0.184 4.184 20 C 0.054 3.946 21 F -0.201 7.201 22 C -0.181 4.181 23 C -0.150 4.150 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.170 0.830 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.203 0.797 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.476 3.631 21.616 22.855 hybrid contribution 0.513 2.035 -0.097 2.101 sum -5.963 5.666 21.519 23.037 Atomic orbital electron populations 1.21921 0.94774 1.02616 1.00893 1.21531 0.96145 0.95452 0.89120 0.94097 1.60148 1.34763 1.31920 1.02731 1.21752 1.01181 0.94039 0.91507 1.19740 0.84409 0.88222 0.84022 1.90562 1.53753 1.15845 1.84458 1.42217 1.60311 1.11120 1.09471 1.19433 1.40198 0.97994 0.85716 0.86300 1.25036 0.97516 0.98404 0.95226 1.69623 1.45350 1.36517 1.00729 0.86669 0.78983 0.85160 0.78557 1.19684 1.20179 1.19478 1.21361 1.00257 0.95582 0.93697 1.21534 1.01280 0.94498 0.97347 1.22167 1.02169 0.99958 0.94108 1.21654 0.99129 0.91749 0.82113 1.92798 1.90949 1.82908 1.53402 1.22098 1.02188 0.94612 0.99206 1.21568 1.01419 0.99020 0.92946 0.92704 0.92868 0.91526 0.82991 0.93928 0.89576 0.79722 0.91626 0.91077 0.91218 0.89517 0.90919 0.90845 0.90114 0.90859 0.91013 0.91321 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.71 37.16 0.32 -1.14 16 2 C 0.09 0.95 2.44 -67.72 -0.17 0.79 16 3 H 0.04 0.43 7.80 -51.93 -0.40 0.03 16 4 N -0.66 -9.72 5.21 -107.99 -0.56 -10.29 16 5 C 0.05 0.78 5.97 -4.97 -0.03 0.75 16 6 C 0.45 10.15 7.82 -10.98 -0.09 10.07 16 7 O -0.56 -15.05 15.78 5.55 0.09 -14.97 16 8 N -0.59 -14.08 5.09 -10.96 -0.06 -14.14 16 9 C -0.30 -8.64 10.16 -14.93 -0.15 -8.79 16 10 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 11 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 12 N -0.88 -25.84 13.96 55.50 0.77 -25.07 16 13 Si 0.88 19.35 27.74 -169.99 -4.71 14.64 16 14 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 15 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 16 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 17 C -0.09 -0.83 1.88 -90.62 -0.17 -1.00 16 18 C -0.11 -1.06 4.69 -26.73 -0.13 -1.18 16 19 C -0.15 -1.32 5.66 -26.73 -0.15 -1.48 16 20 C 0.09 0.78 3.87 -26.73 -0.10 0.67 16 21 F -0.22 -2.44 17.08 2.25 0.04 -2.40 16 22 C -0.14 -1.09 5.66 -26.76 -0.15 -1.25 16 23 C -0.11 -0.83 4.85 -26.76 -0.13 -0.96 16 24 H 0.05 0.44 6.43 -51.93 -0.33 0.11 16 25 H 0.05 0.58 7.45 -51.93 -0.39 0.20 16 26 H 0.07 0.72 6.43 -51.93 -0.33 0.39 16 27 H 0.35 5.38 7.89 -39.29 -0.31 5.07 16 28 H 0.04 0.61 8.06 -51.93 -0.42 0.19 16 29 H 0.09 1.28 7.44 -51.93 -0.39 0.90 16 30 H 0.37 7.73 5.76 -40.82 -0.24 7.49 16 31 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 33 H 0.07 0.65 6.43 -51.93 -0.33 0.32 16 34 H 0.09 1.02 7.48 -51.93 -0.39 0.64 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.66 8.14 -51.92 -0.42 0.23 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 41 H 0.07 0.50 6.43 -51.92 -0.33 0.16 16 LS Contribution 323.05 15.07 4.87 4.87 Total: -1.00 -31.78 323.05 -6.98 -38.76 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -6.38 Total: 11.07 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -1.04 Total: -2.48 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: 0.16 Total: -49.49 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: 0.09 Total: -14.97 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.04 Total: -2.40 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.71 Total: 14.64 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.78 -6.98 -38.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595817642.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.711 kcal (2) G-P(sol) polarization free energy of solvation -31.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds