Wall clock time and date at job start Mon Mar 30 2020 05:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47134 * 2 1 4 4 N 1.46901 * 109.46830 * 240.00491 * 2 1 3 5 5 C 1.46902 * 110.99844 * 84.99930 * 4 2 1 6 6 C 1.50702 * 109.47027 * 179.97438 * 5 4 2 7 7 O 1.21293 * 120.00255 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99928 * 179.72353 * 6 5 4 9 9 C 1.37101 * 120.00327 * 180.27606 * 8 6 5 10 10 H 1.08001 * 119.99426 * 0.02562 * 9 8 6 11 11 C 1.38942 * 120.00412 * 180.02562 * 9 8 6 12 12 N 1.31411 * 120.00042 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 120.00013 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47483 * 89.99599 * 13 11 9 15 15 H 1.48494 * 109.47201 * 209.99761 * 13 11 9 16 16 H 1.48507 * 109.46904 * 329.99936 * 13 11 9 17 17 C 1.52995 * 109.47243 * 120.00882 * 2 1 3 18 18 C 1.53004 * 109.47239 * 59.99686 * 17 2 1 19 19 C 1.53000 * 109.46653 * 180.02562 * 18 17 2 20 20 C 1.52998 * 109.47318 * 60.00419 * 19 18 17 21 21 F 1.39902 * 109.46870 * 179.97438 * 20 19 18 22 22 C 1.52996 * 109.46843 * 299.99216 * 20 19 18 23 23 C 1.52998 * 109.47001 * 299.99676 * 17 2 1 24 24 H 1.09001 * 109.47089 * 299.99716 * 1 2 3 25 25 H 1.09004 * 109.47615 * 59.99461 * 1 2 3 26 26 H 1.09000 * 109.47422 * 179.97438 * 1 2 3 27 27 H 1.00895 * 111.00207 * 208.95273 * 4 2 1 28 28 H 1.09004 * 109.47131 * 60.00016 * 5 4 2 29 29 H 1.08994 * 109.47471 * 299.99766 * 5 4 2 30 30 H 0.97000 * 120.00317 * 0.28382 * 8 6 5 31 31 H 0.97005 * 120.00014 * 180.02562 * 12 11 9 32 32 H 1.08994 * 109.47231 * 179.97438 * 17 2 1 33 33 H 1.08999 * 109.46649 * 299.99744 * 18 17 2 34 34 H 1.08996 * 109.46932 * 60.00179 * 18 17 2 35 35 H 1.08999 * 109.47202 * 299.99182 * 19 18 17 36 36 H 1.09008 * 109.46675 * 180.02562 * 19 18 17 37 37 H 1.08994 * 109.47333 * 59.99481 * 20 19 18 38 38 H 1.09006 * 109.47491 * 300.00640 * 22 20 19 39 39 H 1.09001 * 109.47238 * 179.97438 * 22 20 19 40 40 H 1.09008 * 109.47233 * 300.00164 * 23 17 2 41 41 H 1.09008 * 109.47443 * 59.99857 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 2.0823 0.2228 -2.3469 6 6 2.5883 -0.5212 -3.5558 7 8 2.8686 -1.6982 -3.4702 8 7 2.7236 0.1198 -4.7337 9 6 3.1785 -0.5584 -5.8350 10 1 3.4281 -1.6064 -5.7586 11 6 3.3185 0.1025 -7.0491 12 7 3.7541 -0.5478 -8.1047 13 14 2.8875 1.9153 -7.1809 14 1 4.0900 2.7332 -6.8802 15 1 2.4176 2.2136 -8.5576 16 1 1.8123 2.2403 -6.2094 17 6 2.0400 -0.7214 1.2491 18 6 1.5299 -2.1639 1.2489 19 6 2.0395 -2.8851 2.4984 20 6 1.5290 -2.1638 3.7474 21 9 1.9945 -2.8236 4.8899 22 6 2.0391 -0.7214 3.7476 23 6 1.5301 -0.0003 2.4984 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 2.9172 -1.1204 -1.0289 28 1 2.7587 1.0464 -2.1182 29 1 1.0870 0.6165 -2.5525 30 1 2.4992 1.0610 -4.8023 31 1 3.8522 -0.0863 -8.9523 32 1 3.1299 -0.7218 1.2489 33 1 0.4399 -2.1638 1.2490 34 1 1.8932 -2.6776 0.3589 35 1 3.1295 -2.8852 2.4987 36 1 1.6765 -3.9129 2.4981 37 1 0.4391 -2.1638 3.7470 38 1 3.1291 -0.7214 3.7479 39 1 1.6750 -0.2073 4.6372 40 1 1.8934 1.0274 2.4985 41 1 0.4400 -0.0002 2.4985 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595817642.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:37 Heat of formation + Delta-G solvation = -129.901556 kcal Electronic energy + Delta-G solvation = -21177.954580 eV Core-core repulsion = 17812.108774 eV Total energy + Delta-G solvation = -3365.845807 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.58321 -40.52050 -39.78983 -36.68727 -35.89006 -33.75794 -32.52111 -31.78463 -29.09960 -28.28061 -25.86110 -24.11039 -23.53772 -21.65156 -21.28415 -20.34387 -20.05728 -17.83772 -17.22688 -16.98153 -16.74966 -16.53966 -16.16890 -15.90640 -15.53711 -15.30649 -14.99075 -14.65360 -14.52920 -14.15715 -14.07892 -13.60306 -13.37434 -13.18173 -13.02855 -12.86869 -12.67509 -12.51371 -12.42119 -12.37868 -11.98365 -11.78626 -11.60772 -11.51090 -11.35532 -11.03219 -10.88452 -10.40862 -10.24900 -9.25499 -8.41479 -6.02467 1.30244 1.35484 1.44701 1.96463 2.23063 2.74505 3.15234 3.41578 3.53203 3.65481 3.68470 3.88654 4.05558 4.14555 4.21496 4.28505 4.43574 4.43653 4.51100 4.53273 4.56344 4.65256 4.71634 4.84863 4.98031 5.02582 5.10069 5.15451 5.23077 5.25309 5.28916 5.42748 5.47302 5.53831 5.65139 5.92524 6.15241 6.46119 6.60260 6.88255 7.40117 7.97069 8.76354 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.042578 B = 0.003229 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.452548 B = 8668.484494 C = 9057.921853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.089 3.911 3 H 0.056 0.944 4 N -0.680 5.680 5 C 0.063 3.937 6 C 0.448 3.552 7 O -0.614 6.614 8 N -0.592 5.592 9 C -0.329 4.329 10 H 0.054 0.946 11 C -0.016 4.016 12 N -0.936 5.936 13 Si 0.966 3.034 14 H -0.257 1.257 15 H -0.275 1.275 16 H -0.231 1.231 17 C -0.086 4.086 18 C -0.104 4.104 19 C -0.144 4.144 20 C 0.086 3.914 21 F -0.234 7.234 22 C -0.140 4.140 23 C -0.104 4.104 24 H 0.081 0.919 25 H 0.046 0.954 26 H 0.055 0.945 27 H 0.342 0.658 28 H 0.075 0.925 29 H 0.110 0.890 30 H 0.390 0.610 31 H 0.279 0.721 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.699 8.358 23.886 26.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.020 4.020 3 H 0.074 0.926 4 N -0.313 5.313 5 C -0.070 4.070 6 C 0.236 3.764 7 O -0.498 6.498 8 N -0.234 5.234 9 C -0.458 4.458 10 H 0.072 0.928 11 C -0.214 4.214 12 N -0.576 5.576 13 Si 0.786 3.214 14 H -0.181 1.181 15 H -0.201 1.201 16 H -0.154 1.154 17 C -0.105 4.105 18 C -0.141 4.141 19 C -0.182 4.182 20 C 0.050 3.950 21 F -0.215 7.215 22 C -0.177 4.177 23 C -0.142 4.142 24 H 0.100 0.900 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.161 0.839 28 H 0.092 0.908 29 H 0.128 0.872 30 H 0.225 0.775 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.114 0.886 38 H 0.085 0.915 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.062 7.293 23.593 25.977 hybrid contribution 1.034 0.726 -0.667 1.428 sum -7.028 8.019 22.926 25.285 Atomic orbital electron populations 1.21933 0.93965 1.02249 1.01922 1.21644 0.96617 0.95881 0.87868 0.92600 1.60178 1.34519 1.32625 1.03954 1.21665 1.02623 0.93872 0.88797 1.21047 0.82152 0.87942 0.85223 1.90542 1.55261 1.18566 1.85467 1.42045 1.60765 1.11858 1.08711 1.19010 1.42439 0.96064 0.88330 0.92774 1.26130 0.96408 1.05088 0.93807 1.69810 1.46507 1.39604 1.01718 0.85350 0.80210 0.76419 0.79441 1.18103 1.20054 1.15408 1.21319 0.99912 0.95087 0.94132 1.21437 1.01498 0.94898 0.96291 1.22119 1.01671 0.99971 0.94414 1.21809 1.00018 0.92162 0.80965 1.92770 1.91209 1.83355 1.54190 1.22075 1.01879 0.93823 0.99958 1.21527 1.02060 0.99218 0.91356 0.90027 0.93481 0.92629 0.83888 0.90761 0.87219 0.77485 0.91144 0.91707 0.90634 0.92321 0.91721 0.91177 0.88564 0.91450 0.89704 0.89989 0.89804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.71 71.98 0.63 -1.82 16 2 C 0.09 1.68 2.44 44.91 0.11 1.79 16 3 H 0.06 0.94 7.80 -2.39 -0.02 0.92 16 4 N -0.68 -19.03 5.21 -495.59 -2.58 -21.61 16 5 C 0.06 1.88 5.97 85.56 0.51 2.39 16 6 C 0.45 20.21 7.82 87.66 0.69 20.90 16 7 O -0.61 -34.13 15.78 -3.07 -0.05 -34.18 16 8 N -0.59 -27.95 5.09 -306.98 -1.56 -29.52 16 9 C -0.33 -19.41 10.16 84.04 0.85 -18.55 16 10 H 0.05 3.81 7.39 -2.91 -0.02 3.79 16 11 C -0.02 -0.89 5.50 84.92 0.47 -0.42 16 12 N -0.94 -56.72 13.96 21.66 0.30 -56.42 16 13 Si 0.97 38.70 27.74 68.60 1.90 40.60 16 14 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 15 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 16 H -0.23 -7.75 6.52 99.48 0.65 -7.10 16 17 C -0.09 -1.39 1.88 -10.79 -0.02 -1.42 16 18 C -0.10 -1.93 4.69 30.60 0.14 -1.79 16 19 C -0.14 -2.54 5.66 30.59 0.17 -2.36 16 20 C 0.09 1.35 3.87 30.59 0.12 1.47 16 21 F -0.23 -4.92 17.08 44.97 0.77 -4.16 16 22 C -0.14 -1.77 5.66 30.58 0.17 -1.59 16 23 C -0.10 -1.18 4.85 30.58 0.15 -1.03 16 24 H 0.08 0.96 6.43 -2.39 -0.02 0.95 16 25 H 0.05 0.87 7.45 -2.38 -0.02 0.85 16 26 H 0.05 1.08 6.43 -2.39 -0.02 1.06 16 27 H 0.34 10.48 7.89 -89.70 -0.71 9.77 16 28 H 0.07 1.81 8.06 -2.38 -0.02 1.79 16 29 H 0.11 2.84 7.44 -2.39 -0.02 2.82 16 30 H 0.39 15.15 5.76 -92.71 -0.53 14.62 16 31 H 0.28 15.43 8.31 -92.70 -0.77 14.66 16 32 H 0.06 1.15 8.12 -2.39 -0.02 1.13 16 33 H 0.08 1.31 6.43 -2.39 -0.02 1.29 16 34 H 0.06 1.43 7.48 -2.39 -0.02 1.41 16 35 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 41 H 0.08 0.79 6.43 -2.38 -0.02 0.78 16 Total: -1.00 -74.56 323.05 2.51 -72.05 By element: Atomic # 1 Polarization: 35.93 SS G_CDS: -0.26 Total: 35.67 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: 3.99 Total: -2.44 kcal Atomic # 7 Polarization: -103.70 SS G_CDS: -3.84 Total: -107.55 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -0.05 Total: -34.18 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 0.77 Total: -4.16 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 1.90 Total: 40.60 kcal Total: -74.56 2.51 -72.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595817642.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.847 kcal (2) G-P(sol) polarization free energy of solvation -74.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds