Wall clock time and date at job start Mon Mar 30 2020 05:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.47074 * 120.88261 * 359.72571 * 13 11 10 15 15 C 1.53695 * 108.27576 * 128.74910 * 14 13 11 16 16 N 1.46904 * 109.25420 * 54.08473 * 15 14 13 17 17 C 1.46897 * 110.99901 * 172.60509 * 16 15 14 18 18 C 1.53001 * 109.47421 * 294.30247 * 17 16 15 19 19 C 1.53000 * 109.47486 * 180.02562 * 18 17 16 20 20 F 1.39897 * 109.46996 * 180.02562 * 19 18 17 21 21 C 1.46897 * 111.26792 * 296.75440 * 16 15 14 22 22 C 1.47075 * 120.87669 * 180.02562 * 13 11 10 23 23 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 25 25 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 26 26 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 27 27 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 28 28 H 1.08994 * 109.63016 * 248.52290 * 14 13 11 29 29 H 1.09001 * 109.62513 * 9.10199 * 14 13 11 30 30 H 1.08997 * 109.65385 * 294.08176 * 15 14 13 31 31 H 1.08999 * 109.42153 * 173.94686 * 15 14 13 32 32 H 1.08994 * 109.47420 * 54.30050 * 17 16 15 33 33 H 1.08997 * 109.47407 * 174.29955 * 17 16 15 34 34 H 1.09003 * 109.47141 * 299.99958 * 18 17 16 35 35 H 1.08997 * 109.47068 * 59.99501 * 18 17 16 36 36 H 1.09003 * 109.46703 * 299.99990 * 19 18 17 37 37 H 1.09001 * 109.47098 * 59.99705 * 19 18 17 38 38 H 1.09001 * 109.49120 * 303.14081 * 21 16 15 39 39 H 1.09004 * 109.51506 * 183.07802 * 21 16 15 40 40 H 1.09003 * 109.63301 * 350.89825 * 22 13 11 41 41 H 1.09003 * 109.62726 * 111.48107 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 8 0.2788 -4.9671 0.0011 13 7 2.1655 -6.1344 0.0008 14 6 3.6360 -6.1571 -0.0064 15 6 4.1094 -7.0751 1.1318 16 7 3.4678 -8.3893 0.9929 17 6 4.0235 -9.3507 1.9545 18 6 5.4923 -9.6170 1.6187 19 6 6.0709 -10.6189 2.6199 20 9 7.4140 -10.8619 2.3131 21 6 2.0091 -8.2876 1.1332 22 6 1.4497 -7.4192 0.0008 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5566 0.8902 26 1 2.8718 -3.6044 0.8905 27 1 2.8718 -3.6044 -0.8895 28 1 3.9917 -6.5409 -0.9625 29 1 4.0185 -5.1487 0.1517 30 1 3.8380 -6.6377 2.0926 31 1 5.1918 -7.1912 1.0774 32 1 3.9497 -8.9410 2.9618 33 1 3.4633 -10.2841 1.9001 34 1 5.5661 -10.0269 0.6113 35 1 6.0524 -8.6836 1.6731 36 1 5.9970 -10.2095 3.6274 37 1 5.5106 -11.5522 2.5650 38 1 1.7670 -7.8333 2.0940 39 1 1.5679 -9.2830 1.0801 40 1 0.3859 -7.2458 0.1636 41 1 1.5996 -7.9219 -0.9547 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600075941.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:19 Heat of formation + Delta-G solvation = -94.265716 kcal Electronic energy + Delta-G solvation = -20931.494906 eV Core-core repulsion = 17567.194385 eV Total energy + Delta-G solvation = -3364.300521 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -47.94970 -39.98260 -38.14992 -35.20453 -33.53521 -32.65425 -31.48054 -30.62065 -27.88907 -25.79680 -24.45827 -23.91348 -22.19955 -21.44232 -20.52731 -18.50330 -17.17789 -16.78730 -16.34368 -16.00596 -15.60123 -15.42571 -15.32254 -15.26888 -14.62538 -14.46812 -14.34911 -14.06457 -13.28221 -13.21299 -12.54117 -12.28161 -12.13871 -11.97757 -11.82886 -11.60826 -11.46893 -11.34496 -11.13402 -11.06252 -10.95128 -10.82097 -10.56906 -9.97242 -9.62252 -9.17494 -8.99263 -8.80831 -8.36201 -8.29628 -5.96652 -4.01057 3.16747 3.21539 3.32130 3.39298 3.42494 3.52468 4.27500 4.36756 4.46285 4.50374 4.63378 4.74717 4.81083 4.84969 5.04980 5.14695 5.16781 5.20793 5.31562 5.34732 5.38385 5.48958 5.52189 5.62263 5.75511 5.79221 5.85406 5.97689 6.18720 6.21057 6.64289 6.70719 6.75808 6.90511 7.73999 7.75340 7.85599 8.06646 8.37889 8.73204 9.07613 9.62569 11.14376 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.027810 B = 0.003177 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.593200 B = 8811.398189 C = 9621.498877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.128 4.128 11 C 0.513 3.487 12 O -0.535 6.535 13 N -0.628 5.628 14 C 0.114 3.886 15 C 0.036 3.964 16 N -0.538 5.538 17 C 0.058 3.942 18 C -0.152 4.152 19 C 0.063 3.937 20 F -0.219 7.219 21 C 0.043 3.957 22 C 0.116 3.884 23 H 0.260 0.740 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.041 0.959 31 H 0.088 0.912 32 H 0.037 0.963 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.039 0.961 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.979 -21.758 4.173 24.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.168 4.168 11 C 0.303 3.697 12 O -0.410 6.410 13 N -0.365 5.365 14 C -0.009 4.009 15 C -0.093 4.093 16 N -0.262 5.262 17 C -0.071 4.071 18 C -0.190 4.190 19 C 0.007 3.993 20 F -0.200 7.200 21 C -0.085 4.085 22 C -0.007 4.007 23 H 0.070 0.930 24 H 0.042 0.958 25 H 0.041 0.959 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.055 0.945 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.058 0.942 39 H 0.102 0.898 40 H 0.113 0.887 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.266 -21.786 3.696 24.365 hybrid contribution 0.412 1.126 0.835 1.461 sum 10.678 -20.660 4.531 23.693 Atomic orbital electron populations 1.70013 1.06065 1.26469 1.50294 1.25033 0.94828 0.99251 0.95317 0.86534 0.80010 0.83831 0.77590 1.19727 1.20997 1.21035 1.21253 0.92944 0.90987 1.51250 0.92561 1.18909 0.93181 0.89396 0.98597 1.21877 1.00729 0.91964 1.02221 1.21602 0.88417 0.85451 0.74205 1.90655 1.14407 1.87138 1.48780 1.48366 1.06560 1.05855 1.75681 1.21863 0.80153 1.00456 0.98450 1.22685 0.99566 0.88836 0.98190 1.61917 1.04579 1.08822 1.50917 1.21960 0.94693 0.96618 0.93786 1.22193 0.95974 1.00154 1.00647 1.21933 0.77606 1.00214 0.99525 1.92774 1.36479 1.95877 1.94881 1.22506 0.87331 1.00383 0.98288 1.21566 0.97834 0.83414 0.97920 0.93003 0.95818 0.95888 0.90391 0.90217 0.90878 0.88625 0.94030 0.89408 0.94475 0.90351 0.89721 0.90505 0.90908 0.90734 0.94244 0.89769 0.88747 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.52 13.29 55.43 0.74 -26.79 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 7 C -0.53 -14.94 9.11 -34.44 -0.31 -15.25 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.04 0.99 4.26 -27.89 -0.12 0.87 16 10 C -0.13 -2.63 4.00 -27.88 -0.11 -2.74 16 11 C 0.51 10.13 7.71 -10.98 -0.08 10.05 16 12 O -0.53 -12.78 15.43 5.56 0.09 -12.69 16 13 N -0.63 -9.41 3.00 -172.16 -0.52 -9.92 16 14 C 0.11 1.32 6.53 -3.37 -0.02 1.30 16 15 C 0.04 0.35 5.48 -3.46 -0.02 0.33 16 16 N -0.54 -5.00 4.63 -234.00 -1.08 -6.08 16 17 C 0.06 0.40 4.96 -3.82 -0.02 0.38 16 18 C -0.15 -0.98 5.60 -26.73 -0.15 -1.13 16 19 C 0.06 0.37 7.55 37.16 0.28 0.65 16 20 F -0.22 -1.99 17.36 2.25 0.04 -1.95 16 21 C 0.04 0.44 5.62 -3.68 -0.02 0.42 16 22 C 0.12 1.49 6.60 -3.58 -0.02 1.47 16 23 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 24 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 25 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 26 H 0.08 1.46 7.67 -51.93 -0.40 1.06 16 27 H 0.08 1.50 7.99 -51.93 -0.41 1.08 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.10 1.08 6.02 -51.93 -0.31 0.77 16 30 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.70 6.16 -51.93 -0.32 0.38 16 32 H 0.04 0.26 8.12 -51.93 -0.42 -0.16 16 33 H 0.08 0.46 7.97 -51.93 -0.41 0.05 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.53 6.40 -51.93 -0.33 0.20 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.68 7.99 -51.93 -0.41 0.27 16 40 H 0.09 1.37 7.06 -51.93 -0.37 1.00 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 332.08 15.07 5.00 5.00 Total: -1.00 -34.27 332.08 -8.19 -42.46 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -6.74 Total: -4.58 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -0.70 Total: -2.08 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: -0.86 Total: -42.80 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.09 Total: -12.69 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.27 -8.19 -42.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600075941.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.803 kcal (2) G-P(sol) polarization free energy of solvation -34.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds