Wall clock time and date at job start Mon Mar 30 2020 05:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.47074 * 120.88261 * 359.72571 * 13 11 10 15 15 C 1.53695 * 108.27576 * 128.74910 * 14 13 11 16 16 N 1.46904 * 109.25420 * 54.08473 * 15 14 13 17 17 C 1.46897 * 110.99901 * 172.60509 * 16 15 14 18 18 C 1.53001 * 109.47421 * 294.30247 * 17 16 15 19 19 C 1.53000 * 109.47486 * 180.02562 * 18 17 16 20 20 F 1.39897 * 109.46996 * 180.02562 * 19 18 17 21 21 C 1.46897 * 111.26792 * 296.75440 * 16 15 14 22 22 C 1.47075 * 120.87669 * 180.02562 * 13 11 10 23 23 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 25 25 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 26 26 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 27 27 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 28 28 H 1.08994 * 109.63016 * 248.52290 * 14 13 11 29 29 H 1.09001 * 109.62513 * 9.10199 * 14 13 11 30 30 H 1.08997 * 109.65385 * 294.08176 * 15 14 13 31 31 H 1.08999 * 109.42153 * 173.94686 * 15 14 13 32 32 H 1.08994 * 109.47420 * 54.30050 * 17 16 15 33 33 H 1.08997 * 109.47407 * 174.29955 * 17 16 15 34 34 H 1.09003 * 109.47141 * 299.99958 * 18 17 16 35 35 H 1.08997 * 109.47068 * 59.99501 * 18 17 16 36 36 H 1.09003 * 109.46703 * 299.99990 * 19 18 17 37 37 H 1.09001 * 109.47098 * 59.99705 * 19 18 17 38 38 H 1.09001 * 109.49120 * 303.14081 * 21 16 15 39 39 H 1.09004 * 109.51506 * 183.07802 * 21 16 15 40 40 H 1.09003 * 109.63301 * 350.89825 * 22 13 11 41 41 H 1.09003 * 109.62726 * 111.48107 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 8 0.2788 -4.9671 0.0011 13 7 2.1655 -6.1344 0.0008 14 6 3.6360 -6.1571 -0.0064 15 6 4.1094 -7.0751 1.1318 16 7 3.4678 -8.3893 0.9929 17 6 4.0235 -9.3507 1.9545 18 6 5.4923 -9.6170 1.6187 19 6 6.0709 -10.6189 2.6199 20 9 7.4140 -10.8619 2.3131 21 6 2.0091 -8.2876 1.1332 22 6 1.4497 -7.4192 0.0008 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5566 0.8902 26 1 2.8718 -3.6044 0.8905 27 1 2.8718 -3.6044 -0.8895 28 1 3.9917 -6.5409 -0.9625 29 1 4.0185 -5.1487 0.1517 30 1 3.8380 -6.6377 2.0926 31 1 5.1918 -7.1912 1.0774 32 1 3.9497 -8.9410 2.9618 33 1 3.4633 -10.2841 1.9001 34 1 5.5661 -10.0269 0.6113 35 1 6.0524 -8.6836 1.6731 36 1 5.9970 -10.2095 3.6274 37 1 5.5106 -11.5522 2.5650 38 1 1.7670 -7.8333 2.0940 39 1 1.5679 -9.2830 1.0801 40 1 0.3859 -7.2458 0.1636 41 1 1.5996 -7.9219 -0.9547 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600075941.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:19 Heat of formation + Delta-G solvation = -117.823350 kcal Electronic energy + Delta-G solvation = -20932.516442 eV Core-core repulsion = 17567.194385 eV Total energy + Delta-G solvation = -3365.322057 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.52177 -41.22344 -39.27732 -36.25115 -35.61855 -33.63613 -32.88488 -31.95615 -28.98390 -27.50587 -25.34344 -24.86156 -23.71565 -22.25952 -21.71125 -19.80721 -18.87331 -17.81065 -17.29711 -16.86261 -16.81289 -16.69473 -16.47751 -16.28485 -16.02515 -15.41089 -15.23787 -15.02736 -14.72015 -14.38173 -14.21339 -13.73643 -13.39740 -13.17220 -12.86824 -12.79983 -12.51562 -12.46185 -12.39170 -12.30798 -11.96339 -11.95280 -11.79687 -11.57289 -11.38076 -11.28889 -10.68837 -10.58717 -9.81480 -9.30497 -8.18808 -6.33045 1.42132 1.43648 1.56995 1.65391 1.99827 2.42712 2.76936 3.14325 3.65357 3.72726 3.90634 3.93783 4.02363 4.07955 4.19808 4.26263 4.29360 4.37151 4.43444 4.47717 4.50887 4.54262 4.65235 4.75882 4.80710 4.81870 4.87526 5.01133 5.07229 5.12051 5.30063 5.46636 5.56743 5.60514 5.83882 5.96911 6.00686 6.16316 6.39582 6.85570 7.23172 7.37453 8.94265 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.027810 B = 0.003177 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.593200 B = 8811.398189 C = 9621.498877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.975 3.025 4 H -0.251 1.251 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.541 4.541 8 H 0.077 0.923 9 C 0.043 3.957 10 C -0.115 4.115 11 C 0.510 3.490 12 O -0.591 6.591 13 N -0.617 5.617 14 C 0.106 3.894 15 C 0.040 3.960 16 N -0.541 5.541 17 C 0.059 3.941 18 C -0.144 4.144 19 C 0.059 3.941 20 F -0.238 7.238 21 C 0.053 3.947 22 C 0.111 3.889 23 H 0.263 0.737 24 H -0.019 1.019 25 H -0.019 1.019 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.032 0.968 31 H 0.111 0.889 32 H 0.040 0.960 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.026 0.974 39 H 0.110 0.890 40 H 0.071 0.929 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.879 -22.721 4.502 27.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.799 3.201 4 H -0.174 1.174 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.579 4.579 8 H 0.095 0.905 9 C 0.005 3.995 10 C -0.155 4.155 11 C 0.300 3.700 12 O -0.471 6.471 13 N -0.351 5.351 14 C -0.016 4.016 15 C -0.088 4.088 16 N -0.266 5.266 17 C -0.068 4.068 18 C -0.182 4.182 19 C 0.003 3.997 20 F -0.220 7.220 21 C -0.076 4.076 22 C -0.012 4.012 23 H 0.071 0.929 24 H -0.001 1.001 25 H -0.001 1.001 26 H 0.120 0.880 27 H 0.121 0.879 28 H 0.108 0.892 29 H 0.118 0.882 30 H 0.050 0.950 31 H 0.129 0.871 32 H 0.059 0.941 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.044 0.956 39 H 0.128 0.872 40 H 0.089 0.911 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 13.237 -22.808 4.030 26.677 hybrid contribution -0.492 1.323 0.724 1.587 sum 12.744 -21.485 4.754 25.429 Atomic orbital electron populations 1.70193 1.08371 1.27764 1.51556 1.26162 0.95732 1.04027 0.94625 0.85253 0.79362 0.77975 0.77539 1.17446 1.20637 1.20652 1.21733 0.94019 0.91489 1.50654 0.90485 1.18689 0.93668 0.92526 0.94572 1.21627 0.99297 0.90133 1.04402 1.21410 0.87648 0.86681 0.74251 1.90634 1.16622 1.87994 1.51854 1.48349 1.08261 1.05162 1.73297 1.22188 0.77535 1.01606 1.00264 1.22660 1.00866 0.88637 0.96669 1.61927 1.03828 1.08913 1.51922 1.22007 0.95005 0.96531 0.93255 1.22098 0.95503 1.00104 1.00522 1.22110 0.76519 1.01080 0.99945 1.92735 1.38170 1.96018 1.95062 1.22401 0.88203 1.00823 0.96123 1.21732 0.96700 0.82751 0.99967 0.92852 1.00072 1.00105 0.88038 0.87894 0.89232 0.88198 0.95002 0.87054 0.94147 0.88826 0.90305 0.90913 0.89586 0.88939 0.95552 0.87199 0.91081 0.89874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.03 13.29 21.45 0.28 -59.74 16 2 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 3 Si 0.98 44.36 29.54 68.60 2.03 46.39 16 4 H -0.25 -10.47 7.11 99.48 0.71 -9.76 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.54 -30.95 9.11 25.60 0.23 -30.72 16 8 H 0.08 3.99 7.74 -2.91 -0.02 3.97 16 9 C 0.04 2.44 4.26 29.85 0.13 2.56 16 10 C -0.12 -4.72 4.00 29.85 0.12 -4.60 16 11 C 0.51 20.60 7.71 87.66 0.68 21.27 16 12 O -0.59 -29.93 15.43 -3.03 -0.05 -29.97 16 13 N -0.62 -18.02 3.00 -816.99 -2.45 -20.48 16 14 C 0.11 2.19 6.53 86.50 0.57 2.76 16 15 C 0.04 0.67 5.48 86.54 0.47 1.14 16 16 N -0.54 -8.50 4.63 -894.24 -4.14 -12.64 16 17 C 0.06 0.63 4.96 86.30 0.43 1.06 16 18 C -0.14 -1.43 5.60 30.59 0.17 -1.26 16 19 C 0.06 0.52 7.55 71.98 0.54 1.07 16 20 F -0.24 -3.89 17.36 44.97 0.78 -3.11 16 21 C 0.05 0.97 5.62 86.40 0.49 1.46 16 22 C 0.11 2.78 6.60 86.36 0.57 3.35 16 23 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 24 H -0.02 -1.23 8.10 -2.39 -0.02 -1.25 16 25 H -0.02 -1.25 8.10 -2.39 -0.02 -1.27 16 26 H 0.10 3.67 7.67 -2.39 -0.02 3.65 16 27 H 0.10 3.73 7.99 -2.39 -0.02 3.71 16 28 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.10 1.99 6.02 -2.39 -0.01 1.97 16 30 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.11 1.37 6.16 -2.39 -0.01 1.36 16 32 H 0.04 0.43 8.12 -2.39 -0.02 0.41 16 33 H 0.09 0.75 7.97 -2.39 -0.02 0.73 16 34 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 0.78 6.40 -2.39 -0.02 0.77 16 36 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.11 1.48 7.99 -2.38 -0.02 1.46 16 40 H 0.07 2.13 7.06 -2.39 -0.02 2.12 16 41 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -78.21 332.08 2.31 -75.91 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: 1.00 Total: 5.58 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 4.86 Total: -1.93 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -6.31 Total: -92.86 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -0.05 Total: -29.97 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.78 Total: -3.11 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -78.21 2.31 -75.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600075941.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.915 kcal (2) G-P(sol) polarization free energy of solvation -78.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds