Wall clock time and date at job start Mon Mar 30 2020 05:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.50591 * 2 1 4 4 C 1.53051 * 109.48801 * 239.94688 * 2 1 3 5 5 N 1.46954 * 109.36651 * 298.43366 * 4 2 1 6 6 C 1.46905 * 111.00227 * 176.81183 * 5 4 2 7 7 C 1.46958 * 110.87916 * 300.67967 * 5 4 2 8 8 C 1.53045 * 109.36610 * 59.32381 * 7 5 4 9 9 H 1.09000 * 109.50911 * 61.57195 * 8 7 5 10 10 C 1.52997 * 109.49091 * 181.63372 * 8 7 5 11 11 N 1.46958 * 109.49013 * 120.05605 * 2 1 3 12 12 C 1.46900 * 111.00154 * 296.78314 * 11 2 1 13 13 C 1.53003 * 109.46542 * 293.80042 * 12 11 2 14 14 C 1.53004 * 109.46888 * 180.02562 * 13 12 11 15 15 S 1.81004 * 109.47049 * 179.97438 * 14 13 12 16 16 C 1.76194 * 99.99738 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00441 * 0.02562 * 16 15 14 18 18 C 1.38798 * 120.00052 * 179.97438 * 16 15 14 19 19 N 1.31634 * 119.99969 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00388 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47228 * 179.97438 * 20 18 16 22 22 H 1.48501 * 109.46793 * 299.99994 * 20 18 16 23 23 H 1.48500 * 109.47000 * 60.00087 * 20 18 16 24 24 H 1.08999 * 109.47003 * 299.93912 * 1 2 3 25 25 H 1.08995 * 109.46973 * 59.94616 * 1 2 3 26 26 H 1.09005 * 109.46819 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.48658 * 178.46738 * 4 2 1 28 28 H 1.09006 * 109.50816 * 58.41023 * 4 2 1 29 29 H 1.09000 * 109.46965 * 183.79968 * 6 5 4 30 30 H 1.08996 * 109.46896 * 303.79957 * 6 5 4 31 31 H 1.09001 * 109.46535 * 63.80004 * 6 5 4 32 32 H 1.08992 * 109.48967 * 299.34908 * 7 5 4 33 33 H 1.09006 * 109.50594 * 179.30094 * 7 5 4 34 34 H 1.09000 * 109.47146 * 179.88680 * 10 8 7 35 35 H 1.09001 * 109.47087 * 299.88249 * 10 8 7 36 36 H 1.08996 * 109.47251 * 59.88734 * 10 8 7 37 37 H 1.09000 * 109.47297 * 173.79940 * 12 11 2 38 38 H 1.09001 * 109.47218 * 53.79339 * 12 11 2 39 39 H 1.09000 * 109.47408 * 59.99966 * 13 12 11 40 40 H 1.09001 * 109.46790 * 299.99559 * 13 12 11 41 41 H 1.09000 * 109.47368 * 59.99642 * 14 13 12 42 42 H 1.09001 * 109.46801 * 299.99254 * 14 13 12 43 43 H 0.97005 * 119.99723 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0406 -0.7226 -1.2489 5 7 1.5809 -2.1182 -1.2266 6 6 1.9877 -2.8261 -2.4478 7 6 2.0712 -2.8120 -0.0275 8 6 1.5606 -2.0896 1.2214 9 1 0.4709 -2.1133 1.2356 10 6 2.1028 -2.7856 2.4713 11 7 2.0204 -0.6939 1.1991 12 6 1.6134 0.0140 2.4203 13 6 2.3130 1.3734 2.4788 14 6 1.8898 2.1105 3.7510 15 16 2.7179 3.7184 3.8206 16 6 2.0675 4.3321 5.3388 17 1 1.3730 3.7337 5.9099 18 6 2.4484 5.5840 5.8014 19 7 3.2959 6.3127 5.1061 20 14 1.7593 6.2344 7.4113 21 1 2.3191 7.5833 7.6803 22 1 0.2799 6.3216 7.3171 23 1 2.1318 5.3151 8.5164 24 1 -0.3633 0.5129 0.8905 25 1 -0.3633 0.5146 -0.8895 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1303 -0.6988 -1.2627 28 1 1.6547 -0.2268 -2.1396 29 1 1.5776 -3.8359 -2.4361 30 1 1.6119 -2.2914 -3.3200 31 1 3.0757 -2.8763 -2.4932 32 1 3.1611 -2.8121 -0.0275 33 1 1.7076 -3.8397 -0.0273 34 1 1.7405 -2.2696 3.3605 35 1 1.7616 -3.8207 2.4877 36 1 3.1924 -2.7624 2.4564 37 1 1.8931 -0.5765 3.2928 38 1 0.5335 0.1612 2.4122 39 1 2.0333 1.9639 1.6063 40 1 3.3930 1.2262 2.4869 41 1 2.1698 1.5199 4.6233 42 1 0.8098 2.2577 3.7433 43 1 3.6540 5.9748 4.2703 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685985963.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:33 Heat of formation + Delta-G solvation = -5.818084 kcal Electronic energy + Delta-G solvation = -19465.294429 eV Core-core repulsion = 16671.042461 eV Total energy + Delta-G solvation = -2794.251968 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.16706 -36.33398 -33.55333 -32.95097 -32.48456 -29.10142 -27.42062 -27.00214 -25.44988 -24.59794 -23.11237 -21.78551 -20.79321 -18.67688 -18.09963 -16.38760 -16.14260 -15.43622 -15.29216 -14.76724 -14.52453 -14.16476 -13.98416 -13.81432 -13.21926 -13.00700 -12.65909 -12.65089 -12.42859 -12.37539 -12.13156 -11.85306 -11.74460 -11.60162 -11.38760 -11.09506 -10.97314 -10.90399 -10.78851 -10.45843 -10.16371 -10.10135 -9.31979 -8.98687 -8.59060 -8.28348 -8.23290 -6.67145 -6.60646 -3.98012 3.27922 3.38755 3.42087 3.58598 3.69775 3.84748 4.27594 4.60793 4.74005 4.79423 5.01176 5.08777 5.18817 5.22061 5.22991 5.24392 5.27143 5.34187 5.42138 5.45860 5.49154 5.56679 5.57758 5.59368 5.65839 5.73458 5.76197 5.85577 5.91923 5.98975 6.06224 6.17134 6.24354 6.34475 6.53814 6.68118 6.76884 6.78484 7.13012 7.14119 7.96505 8.52243 9.29512 10.83767 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.039439 B = 0.003350 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.791418 B = 8356.778370 C = 8659.584839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.078 3.922 3 H 0.092 0.908 4 C 0.062 3.938 5 N -0.543 5.543 6 C 0.026 3.974 7 C 0.064 3.936 8 C 0.079 3.921 9 H 0.052 0.948 10 C -0.149 4.149 11 N -0.528 5.528 12 C 0.052 3.948 13 C -0.094 4.094 14 C -0.088 4.088 15 S -0.189 6.189 16 C -0.588 4.588 17 H 0.065 0.935 18 C 0.033 3.967 19 N -0.887 5.887 20 Si 1.083 2.917 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.285 1.285 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.042 0.958 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.025 0.975 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.038 0.962 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.988 -19.187 -12.029 22.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.030 4.030 3 H 0.110 0.890 4 C -0.066 4.066 5 N -0.268 5.268 6 C -0.123 4.123 7 C -0.065 4.065 8 C -0.029 4.029 9 H 0.070 0.930 10 C -0.207 4.207 11 N -0.253 5.253 12 C -0.077 4.077 13 C -0.132 4.132 14 C -0.238 4.238 15 S 0.039 5.961 16 C -0.736 4.736 17 H 0.083 0.917 18 C -0.177 4.177 19 N -0.522 5.522 20 Si 0.909 3.091 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.211 1.211 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.060 0.940 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.043 0.957 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.056 0.944 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.195 -17.405 -11.739 21.235 hybrid contribution -1.018 -1.888 -0.084 2.147 sum -4.213 -19.293 -11.823 23.016 Atomic orbital electron populations 1.22318 0.96881 1.02635 1.01808 1.21798 0.93650 0.98219 0.89356 0.88970 1.22192 0.98174 0.88382 0.97832 1.62136 1.59805 1.02527 1.02309 1.22336 0.98312 0.99160 0.92457 1.22189 0.98112 0.97111 0.89042 1.21646 0.98070 0.88666 0.94567 0.93012 1.21908 1.02137 0.99688 0.96959 1.62395 1.59331 1.01349 1.02202 1.22293 0.97898 0.95286 0.92181 1.21293 1.01159 0.93687 0.97104 1.23038 1.02121 0.99353 0.99289 1.84145 1.62591 1.15532 1.33879 1.23532 1.34681 1.08119 1.07262 0.91715 1.26077 0.95047 0.92554 1.04066 1.70803 1.27187 1.38851 1.15320 0.83336 0.75771 0.76401 0.73560 1.20288 1.21152 1.21141 0.92673 0.92388 0.91450 0.93984 0.90408 0.91512 0.91424 0.95661 0.93999 0.90656 0.91850 0.92295 0.91750 0.90331 0.94394 0.91753 0.90930 0.91954 0.92149 0.91084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.04 8.38 37.16 0.31 -1.73 16 2 C 0.08 0.93 2.77 -67.65 -0.19 0.74 16 3 H 0.09 1.19 6.34 -51.93 -0.33 0.86 16 4 C 0.06 0.66 5.05 -3.77 -0.02 0.64 16 5 N -0.54 -5.40 4.28 -242.75 -1.04 -6.44 16 6 C 0.03 0.20 9.60 60.07 0.58 0.78 16 7 C 0.06 0.63 4.90 -3.77 -0.02 0.61 16 8 C 0.08 0.85 2.18 -67.65 -0.15 0.71 16 9 H 0.05 0.60 6.35 -51.93 -0.33 0.27 16 10 C -0.15 -1.44 8.89 37.16 0.33 -1.11 16 11 N -0.53 -6.58 4.48 -218.56 -0.98 -7.56 16 12 C 0.05 0.72 4.54 -3.82 -0.02 0.70 16 13 C -0.09 -1.56 5.15 -26.73 -0.14 -1.70 16 14 C -0.09 -1.82 5.67 37.16 0.21 -1.61 16 15 S -0.19 -5.00 20.46 -107.50 -2.20 -7.20 16 16 C -0.59 -17.31 9.50 30.94 0.29 -17.01 16 17 H 0.06 1.86 7.80 -52.49 -0.41 1.45 16 18 C 0.03 0.96 5.49 -17.43 -0.10 0.86 16 19 N -0.89 -27.69 13.67 55.49 0.76 -26.93 16 20 Si 1.08 25.34 29.92 -169.99 -5.09 20.25 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 23 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 24 H 0.05 0.68 6.35 -51.93 -0.33 0.35 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.79 5.94 -51.93 -0.31 0.48 16 27 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.74 8.13 -51.93 -0.42 0.32 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.48 8.13 -51.93 -0.42 0.06 16 31 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.64 6.15 -51.93 -0.32 0.32 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 1.05 5.73 -51.93 -0.30 0.75 16 38 H 0.04 0.53 6.10 -51.93 -0.32 0.21 16 39 H 0.06 1.08 6.49 -51.93 -0.34 0.75 16 40 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.06 1.28 8.14 -51.92 -0.42 0.85 16 42 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 43 H 0.28 8.74 7.12 -40.82 -0.29 8.44 16 LS Contribution 336.46 15.07 5.07 5.07 Total: -1.00 -31.54 336.46 -9.93 -41.47 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -7.56 Total: -0.54 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: 1.10 Total: -18.13 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: -1.26 Total: -40.93 kcal Atomic # 14 Polarization: 25.34 SS G_CDS: -5.09 Total: 20.25 kcal Atomic # 16 Polarization: -5.00 SS G_CDS: -2.20 Total: -7.20 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.54 -9.93 -41.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685985963.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.656 kcal (2) G-P(sol) polarization free energy of solvation -31.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds