Wall clock time and date at job start Mon Mar 30 2020 05:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.50591 * 2 1 4 4 C 1.53051 * 109.48801 * 239.94688 * 2 1 3 5 5 N 1.46954 * 109.36651 * 298.43366 * 4 2 1 6 6 C 1.46905 * 111.00227 * 176.81183 * 5 4 2 7 7 C 1.46958 * 110.87916 * 300.67967 * 5 4 2 8 8 C 1.53045 * 109.36610 * 59.32381 * 7 5 4 9 9 H 1.09000 * 109.50911 * 61.57195 * 8 7 5 10 10 C 1.52997 * 109.49091 * 181.63372 * 8 7 5 11 11 N 1.46958 * 109.49013 * 120.05605 * 2 1 3 12 12 C 1.46900 * 111.00154 * 296.78314 * 11 2 1 13 13 C 1.53003 * 109.46542 * 293.80042 * 12 11 2 14 14 C 1.53004 * 109.46888 * 180.02562 * 13 12 11 15 15 S 1.81004 * 109.47049 * 179.97438 * 14 13 12 16 16 C 1.76194 * 99.99738 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00441 * 0.02562 * 16 15 14 18 18 C 1.38798 * 120.00052 * 179.97438 * 16 15 14 19 19 N 1.31634 * 119.99969 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00388 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47228 * 179.97438 * 20 18 16 22 22 H 1.48501 * 109.46793 * 299.99994 * 20 18 16 23 23 H 1.48500 * 109.47000 * 60.00087 * 20 18 16 24 24 H 1.08999 * 109.47003 * 299.93912 * 1 2 3 25 25 H 1.08995 * 109.46973 * 59.94616 * 1 2 3 26 26 H 1.09005 * 109.46819 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.48658 * 178.46738 * 4 2 1 28 28 H 1.09006 * 109.50816 * 58.41023 * 4 2 1 29 29 H 1.09000 * 109.46965 * 183.79968 * 6 5 4 30 30 H 1.08996 * 109.46896 * 303.79957 * 6 5 4 31 31 H 1.09001 * 109.46535 * 63.80004 * 6 5 4 32 32 H 1.08992 * 109.48967 * 299.34908 * 7 5 4 33 33 H 1.09006 * 109.50594 * 179.30094 * 7 5 4 34 34 H 1.09000 * 109.47146 * 179.88680 * 10 8 7 35 35 H 1.09001 * 109.47087 * 299.88249 * 10 8 7 36 36 H 1.08996 * 109.47251 * 59.88734 * 10 8 7 37 37 H 1.09000 * 109.47297 * 173.79940 * 12 11 2 38 38 H 1.09001 * 109.47218 * 53.79339 * 12 11 2 39 39 H 1.09000 * 109.47408 * 59.99966 * 13 12 11 40 40 H 1.09001 * 109.46790 * 299.99559 * 13 12 11 41 41 H 1.09000 * 109.47368 * 59.99642 * 14 13 12 42 42 H 1.09001 * 109.46801 * 299.99254 * 14 13 12 43 43 H 0.97005 * 119.99723 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0406 -0.7226 -1.2489 5 7 1.5809 -2.1182 -1.2266 6 6 1.9877 -2.8261 -2.4478 7 6 2.0712 -2.8120 -0.0275 8 6 1.5606 -2.0896 1.2214 9 1 0.4709 -2.1133 1.2356 10 6 2.1028 -2.7856 2.4713 11 7 2.0204 -0.6939 1.1991 12 6 1.6134 0.0140 2.4203 13 6 2.3130 1.3734 2.4788 14 6 1.8898 2.1105 3.7510 15 16 2.7179 3.7184 3.8206 16 6 2.0675 4.3321 5.3388 17 1 1.3730 3.7337 5.9099 18 6 2.4484 5.5840 5.8014 19 7 3.2959 6.3127 5.1061 20 14 1.7593 6.2344 7.4113 21 1 2.3191 7.5833 7.6803 22 1 0.2799 6.3216 7.3171 23 1 2.1318 5.3151 8.5164 24 1 -0.3633 0.5129 0.8905 25 1 -0.3633 0.5146 -0.8895 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1303 -0.6988 -1.2627 28 1 1.6547 -0.2268 -2.1396 29 1 1.5776 -3.8359 -2.4361 30 1 1.6119 -2.2914 -3.3200 31 1 3.0757 -2.8763 -2.4932 32 1 3.1611 -2.8121 -0.0275 33 1 1.7076 -3.8397 -0.0273 34 1 1.7405 -2.2696 3.3605 35 1 1.7616 -3.8207 2.4877 36 1 3.1924 -2.7624 2.4564 37 1 1.8931 -0.5765 3.2928 38 1 0.5335 0.1612 2.4122 39 1 2.0333 1.9639 1.6063 40 1 3.3930 1.2262 2.4869 41 1 2.1698 1.5199 4.6233 42 1 0.8098 2.2577 3.7433 43 1 3.6540 5.9748 4.2703 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685985963.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:32 Heat of formation + Delta-G solvation = -26.309285 kcal Electronic energy + Delta-G solvation = -19466.182994 eV Core-core repulsion = 16671.042461 eV Total energy + Delta-G solvation = -2795.140533 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.07117 -37.27512 -34.81428 -34.52874 -34.04329 -30.16058 -28.21136 -27.82831 -27.35179 -26.10717 -24.12976 -22.63836 -22.06333 -20.26296 -19.59248 -17.41686 -17.15321 -16.56130 -16.24856 -16.20396 -15.75280 -15.67724 -15.23929 -15.07868 -14.68450 -14.44330 -14.08016 -13.78881 -13.43492 -13.25719 -13.05792 -12.88911 -12.78189 -12.74127 -12.65661 -12.45578 -12.34339 -12.02627 -11.97614 -11.91145 -11.43911 -11.27888 -11.12296 -11.08425 -10.41393 -9.39710 -9.18341 -8.94575 -8.87094 -6.28580 1.40896 1.57475 1.58001 1.79069 2.32689 2.81627 2.96230 2.99704 3.13297 3.74829 3.80233 3.94043 4.00547 4.15310 4.16002 4.27015 4.35592 4.42163 4.44396 4.51684 4.57126 4.57920 4.60812 4.65945 4.68921 4.79153 4.80588 4.89369 5.01272 5.02203 5.05797 5.08954 5.13809 5.20047 5.30603 5.41994 5.61951 5.95835 5.98879 6.15498 6.18870 6.20581 7.04131 8.50060 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.039439 B = 0.003350 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.791418 B = 8356.778370 C = 8659.584839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.075 3.925 3 H 0.077 0.923 4 C 0.067 3.933 5 N -0.550 5.550 6 C 0.026 3.974 7 C 0.067 3.933 8 C 0.079 3.921 9 H 0.049 0.951 10 C -0.146 4.146 11 N -0.536 5.536 12 C 0.064 3.936 13 C -0.079 4.079 14 C -0.065 4.065 15 S -0.243 6.243 16 C -0.606 4.606 17 H 0.065 0.935 18 C -0.018 4.018 19 N -0.912 5.912 20 Si 1.133 2.867 21 H -0.276 1.276 22 H -0.265 1.265 23 H -0.265 1.265 24 H 0.042 0.958 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.032 0.968 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.024 0.976 32 H 0.033 0.967 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.085 0.915 38 H 0.040 0.960 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.089 -20.907 -11.947 24.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.033 4.033 3 H 0.095 0.905 4 C -0.061 4.061 5 N -0.274 5.274 6 C -0.122 4.122 7 C -0.062 4.062 8 C -0.029 4.029 9 H 0.067 0.933 10 C -0.203 4.203 11 N -0.261 5.261 12 C -0.065 4.065 13 C -0.118 4.118 14 C -0.215 4.215 15 S -0.015 6.015 16 C -0.753 4.753 17 H 0.083 0.917 18 C -0.222 4.222 19 N -0.547 5.547 20 Si 0.951 3.049 21 H -0.201 1.201 22 H -0.190 1.190 23 H -0.190 1.190 24 H 0.061 0.939 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.050 0.950 28 H 0.107 0.893 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.043 0.957 32 H 0.052 0.948 33 H 0.111 0.889 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.103 0.897 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.295 -19.157 -11.686 22.848 hybrid contribution -0.675 -1.447 -0.198 1.609 sum -4.970 -20.605 -11.884 24.300 Atomic orbital electron populations 1.22220 0.96393 1.02521 1.01561 1.21810 0.93975 0.97698 0.89856 0.90462 1.22121 0.97510 0.89048 0.97434 1.62165 1.59876 1.02259 1.03148 1.22388 0.98392 0.99678 0.91720 1.22190 0.97590 0.97823 0.88552 1.21722 0.97890 0.87551 0.95738 0.93343 1.21888 1.01662 1.00734 0.96056 1.62370 1.59703 1.02281 1.01698 1.22087 0.97447 0.93606 0.93379 1.21151 1.00825 0.94991 0.94869 1.23015 1.01339 0.95778 1.01371 1.84217 1.64069 1.19946 1.33264 1.23904 1.34643 1.08614 1.08172 0.91690 1.27793 0.94393 0.92962 1.07018 1.70918 1.28822 1.39535 1.15445 0.82749 0.76190 0.76159 0.69772 1.20106 1.19035 1.19025 0.93855 0.91664 0.91382 0.94981 0.89329 0.90273 0.90700 0.95715 0.94831 0.88862 0.92437 0.90241 0.92363 0.89658 0.94221 0.92090 0.91811 0.91680 0.91959 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.66 8.38 71.98 0.60 -3.06 16 2 C 0.08 1.73 2.77 44.92 0.12 1.85 16 3 H 0.08 1.99 6.34 -2.39 -0.02 1.97 16 4 C 0.07 1.33 5.05 86.31 0.44 1.77 16 5 N -0.55 -9.84 4.28 -921.93 -3.95 -13.79 16 6 C 0.03 0.35 9.60 127.69 1.23 1.58 16 7 C 0.07 1.17 4.90 86.31 0.42 1.59 16 8 C 0.08 1.56 2.18 44.92 0.10 1.66 16 9 H 0.05 1.01 6.35 -2.39 -0.02 1.00 16 10 C -0.15 -2.53 8.89 71.98 0.64 -1.89 16 11 N -0.54 -12.80 4.48 -845.40 -3.78 -16.58 16 12 C 0.06 1.69 4.54 86.30 0.39 2.09 16 13 C -0.08 -2.63 5.15 30.60 0.16 -2.47 16 14 C -0.07 -2.68 5.67 71.98 0.41 -2.28 16 15 S -0.24 -13.09 20.46 -56.49 -1.16 -14.25 16 16 C -0.61 -35.89 9.50 67.95 0.65 -35.25 16 17 H 0.06 3.73 7.80 -2.91 -0.02 3.71 16 18 C -0.02 -1.08 5.49 84.86 0.47 -0.61 16 19 N -0.91 -57.77 13.67 21.65 0.30 -57.47 16 20 Si 1.13 50.21 29.92 68.60 2.05 52.26 16 21 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 22 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 23 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 24 H 0.04 1.03 6.35 -2.39 -0.02 1.02 16 25 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.07 1.47 5.94 -2.38 -0.01 1.46 16 27 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.09 1.55 8.13 -2.38 -0.02 1.53 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 0.90 8.13 -2.39 -0.02 0.88 16 31 H 0.02 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.06 1.06 6.15 -2.39 -0.01 1.05 16 35 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.09 2.16 5.73 -2.39 -0.01 2.15 16 38 H 0.04 1.05 6.10 -2.39 -0.01 1.04 16 39 H 0.06 2.07 6.49 -2.39 -0.02 2.05 16 40 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.06 2.63 8.14 -2.40 -0.02 2.61 16 42 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 43 H 0.26 17.07 7.12 -92.70 -0.66 16.41 16 Total: -1.00 -67.85 336.46 0.15 -67.70 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 1.07 Total: 17.14 kcal Atomic # 6 Polarization: -40.63 SS G_CDS: 5.62 Total: -35.01 kcal Atomic # 7 Polarization: -80.40 SS G_CDS: -7.44 Total: -87.84 kcal Atomic # 14 Polarization: 50.21 SS G_CDS: 2.05 Total: 52.26 kcal Atomic # 16 Polarization: -13.09 SS G_CDS: -1.16 Total: -14.25 kcal Total: -67.85 0.15 -67.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685985963.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.393 kcal (2) G-P(sol) polarization free energy of solvation -67.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds