Wall clock time and date at job start Mon Mar 30 2020 05:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99741 * 3 2 1 5 5 H 1.48499 * 109.47039 * 29.99902 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99702 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.49552 * 126.21319 * 359.96766 * 9 7 2 11 11 C 1.49681 * 104.43774 * 186.57920 * 10 9 7 12 12 H 1.08998 * 108.16454 * 77.72050 * 11 10 9 13 13 C 1.49834 * 129.61700 * 211.56096 * 11 10 9 14 14 N 1.49738 * 105.17813 * 146.84028 * 13 11 10 15 15 C 1.46899 * 111.00206 * 115.59054 * 14 13 11 16 16 C 1.50703 * 109.46873 * 70.37217 * 15 14 13 17 17 C 1.38234 * 120.00168 * 269.72884 * 16 15 14 18 18 C 1.38232 * 120.00097 * 179.74241 * 17 16 15 19 19 C 1.38237 * 119.99781 * 0.53332 * 18 17 16 20 20 C 1.38231 * 120.00120 * 359.74203 * 19 18 17 21 21 C 1.38236 * 120.00054 * 359.97438 * 20 19 18 22 22 C 1.50098 * 107.60445 * 353.95931 * 14 13 11 23 23 C 1.51419 * 102.34111 * 334.09418 * 22 14 13 24 24 H 1.09007 * 111.42603 * 287.36409 * 23 22 14 25 25 C 1.49805 * 126.21209 * 180.27606 * 9 7 2 26 26 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 27 27 H 1.08994 * 110.44599 * 305.44569 * 10 9 7 28 28 H 1.09000 * 110.44480 * 67.98684 * 10 9 7 29 29 H 1.09001 * 109.37734 * 28.24521 * 13 11 10 30 30 H 1.09000 * 110.96152 * 266.25129 * 13 11 10 31 31 H 1.08994 * 109.47634 * 190.37185 * 15 14 13 32 32 H 1.09009 * 109.47190 * 310.38024 * 15 14 13 33 33 H 1.08004 * 120.00132 * 359.97438 * 17 16 15 34 34 H 1.08000 * 120.00200 * 180.29342 * 18 17 16 35 35 H 1.08004 * 119.99961 * 179.77111 * 19 18 17 36 36 H 1.07999 * 120.00510 * 180.02562 * 20 19 18 37 37 H 1.07997 * 120.00165 * 179.97438 * 21 20 19 38 38 H 1.09001 * 110.82729 * 215.88531 * 22 14 13 39 39 H 1.08996 * 110.83215 * 92.30503 * 22 14 13 40 40 H 1.09007 * 110.90934 * 324.95286 * 25 9 7 41 41 H 1.09000 * 110.90702 * 88.51989 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 -0.1611 -2.5499 0.0141 11 6 -0.3755 -4.0214 0.1850 12 1 -0.2140 -4.2687 1.2342 13 6 -1.4809 -4.8920 -0.3298 14 7 -0.8415 -6.2188 -0.6000 15 6 -1.3940 -7.2582 0.2788 16 6 -2.8130 -7.5592 -0.1296 17 6 -3.8594 -6.8564 0.4378 18 6 -5.1607 -7.1288 0.0593 19 6 -5.4163 -8.1116 -0.8786 20 6 -4.3703 -8.8184 -1.4418 21 6 -3.0686 -8.5419 -1.0676 22 6 0.6359 -6.0628 -0.3857 23 6 0.8470 -4.5867 -0.6488 24 1 0.7625 -4.3553 -1.7107 25 6 1.9299 -3.7588 0.0140 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5998 -2.0002 0.8468 28 1 -0.5855 -2.2130 -0.9316 29 1 -1.8772 -4.4661 -1.2516 30 1 -2.2732 -4.9956 0.4116 31 1 -0.7920 -8.1629 0.1946 32 1 -1.3797 -6.9069 1.3107 33 1 -3.6601 -6.0918 1.1742 34 1 -5.9779 -6.5764 0.4991 35 1 -6.4333 -8.3270 -1.1716 36 1 -4.5699 -9.5860 -2.1748 37 1 -2.2514 -9.0943 -1.5073 38 1 1.1968 -6.6676 -1.0983 39 1 0.9079 -6.3167 0.6387 40 1 2.8496 -3.7816 -0.5706 41 1 2.1109 -4.0987 1.0337 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685991827.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:53 Heat of formation + Delta-G solvation = 85.051434 kcal Electronic energy + Delta-G solvation = -20695.240643 eV Core-core repulsion = 17769.485122 eV Total energy + Delta-G solvation = -2925.755521 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.01668 -38.92875 -35.67780 -32.89744 -31.37502 -30.94917 -29.72100 -28.91190 -26.32838 -25.51919 -23.90456 -22.59516 -21.55832 -20.66440 -19.65928 -19.16977 -16.77169 -16.68499 -16.02767 -15.33901 -15.16189 -14.99437 -14.39556 -13.78107 -13.77748 -13.48162 -13.15179 -13.11176 -12.62480 -12.48897 -11.99740 -11.82605 -11.74329 -11.31722 -11.10287 -11.01867 -10.90853 -10.78285 -10.54605 -10.38101 -10.04933 -9.89558 -9.63047 -9.32438 -8.92409 -8.77997 -8.61847 -8.14967 -6.84514 -5.68703 -3.02049 1.31601 1.38903 3.41918 3.46467 3.48585 3.68198 4.25856 4.48431 4.56031 4.82417 4.84807 4.97652 5.07075 5.13325 5.20709 5.38092 5.47165 5.52442 5.58794 5.61220 5.66173 5.78534 5.97254 5.98161 6.01659 6.07076 6.19663 6.27583 6.28846 6.42790 6.47597 6.52630 6.60715 6.62206 6.80795 6.97220 7.00542 7.03357 7.22040 7.52503 7.60430 7.80735 8.19022 9.18459 9.79999 10.49184 11.43919 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.034884 B = 0.003822 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.472532 B = 7324.162714 C = 7913.503712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.010 4.010 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.225 4.225 8 H 0.078 0.922 9 N -0.610 5.610 10 C 0.204 3.796 11 C -0.152 4.152 12 H 0.052 0.948 13 C 0.065 3.935 14 N -0.519 5.519 15 C 0.084 3.916 16 C -0.070 4.070 17 C -0.112 4.112 18 C -0.121 4.121 19 C -0.125 4.125 20 C -0.124 4.124 21 C -0.101 4.101 22 C 0.059 3.941 23 C -0.129 4.129 24 H 0.087 0.913 25 C 0.150 3.850 26 H 0.252 0.748 27 H 0.058 0.942 28 H 0.035 0.965 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.043 0.957 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.079 0.921 39 H 0.047 0.953 40 H 0.044 0.956 41 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.441 -17.544 -0.081 19.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.338 5.338 10 C 0.079 3.921 11 C -0.172 4.172 12 H 0.070 0.930 13 C -0.062 4.062 14 N -0.243 5.243 15 C -0.044 4.044 16 C -0.070 4.070 17 C -0.131 4.131 18 C -0.139 4.139 19 C -0.144 4.144 20 C -0.142 4.142 21 C -0.119 4.119 22 C -0.068 4.068 23 C -0.149 4.149 24 H 0.106 0.894 25 C 0.024 3.976 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.053 0.947 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.061 0.939 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.097 0.903 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -7.567 -17.466 -0.580 19.043 hybrid contribution 0.513 1.183 0.845 1.541 sum -7.053 -16.283 0.264 17.747 Atomic orbital electron populations 1.69941 1.04870 1.24989 1.57253 1.24779 0.95721 0.97555 1.02527 0.86117 0.78536 0.83544 0.77558 1.21624 1.21706 1.20756 1.19082 0.90403 0.82364 1.43507 0.90390 1.45818 1.00885 0.99462 1.87643 1.20151 0.84340 0.86744 1.00815 1.22607 0.95694 1.00091 0.98839 0.92956 1.21929 0.95542 0.88076 1.00683 1.65367 1.03269 1.05210 1.50500 1.21179 0.92048 0.96414 0.94715 1.19779 0.94724 0.95877 0.96656 1.21140 0.92566 0.99135 1.00249 1.21117 0.96660 0.98041 0.98064 1.21113 0.98935 0.96768 0.97560 1.21118 0.92890 1.00073 1.00115 1.21001 0.96599 0.97633 0.96709 1.22421 0.88082 0.96636 0.99679 1.22793 0.98526 0.92821 1.00756 0.89442 1.21031 0.94074 0.86188 0.96313 0.93785 0.92341 0.94696 0.90533 0.92237 0.90203 0.93891 0.86176 0.86219 0.86427 0.86328 0.86125 0.90275 0.93451 0.93789 0.96036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.45 10.46 55.49 0.58 -26.87 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 3 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.23 -6.39 10.34 -15.06 -0.16 -6.55 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.61 -15.91 3.50 -170.72 -0.60 -16.51 16 10 C 0.20 5.02 5.24 -3.99 -0.02 5.00 16 11 C -0.15 -2.93 2.75 -90.85 -0.25 -3.18 16 12 H 0.05 1.03 7.98 -51.93 -0.41 0.61 16 13 C 0.06 1.07 6.23 -3.81 -0.02 1.04 16 14 N -0.52 -7.63 5.28 -233.65 -1.23 -8.86 16 15 C 0.08 1.05 4.83 -4.98 -0.02 1.02 16 16 C -0.07 -0.85 5.12 -104.62 -0.54 -1.39 16 17 C -0.11 -1.34 8.65 -39.58 -0.34 -1.68 16 18 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 19 C -0.13 -1.27 10.05 -39.58 -0.40 -1.67 16 20 C -0.12 -1.27 10.05 -39.58 -0.40 -1.66 16 21 C -0.10 -1.13 9.70 -39.58 -0.38 -1.52 16 22 C 0.06 0.87 6.47 -2.83 -0.02 0.85 16 23 C -0.13 -2.35 3.29 -89.16 -0.29 -2.64 16 24 H 0.09 1.74 8.14 -51.92 -0.42 1.31 16 25 C 0.15 3.13 7.02 -2.92 -0.02 3.11 16 26 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 27 H 0.06 1.60 7.16 -51.93 -0.37 1.23 16 28 H 0.03 0.94 7.88 -51.93 -0.41 0.53 16 29 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 30 H 0.06 0.90 5.35 -51.93 -0.28 0.62 16 31 H 0.08 0.87 8.03 -51.93 -0.42 0.45 16 32 H 0.04 0.53 7.99 -51.92 -0.42 0.12 16 33 H 0.12 1.38 6.90 -52.48 -0.36 1.02 16 34 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 35 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 36 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 37 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.05 0.66 7.89 -51.93 -0.41 0.25 16 40 H 0.04 0.89 8.14 -51.92 -0.42 0.47 16 41 H 0.02 0.45 8.12 -51.93 -0.42 0.02 16 LS Contribution 323.63 15.07 4.88 4.88 Total: -1.00 -30.68 323.63 -11.18 -41.86 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -6.43 Total: -0.48 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -3.36 Total: -11.34 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: -1.25 Total: -52.25 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.68 -11.18 -41.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685991827.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.909 kcal (2) G-P(sol) polarization free energy of solvation -30.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds